RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 FOXJ3Q9UPW0 622 aa12.41□□□□□ -0.42
UPF1-202ENST00000594243 ATRQ13535 2644 aa12.4□□□□□ -0.42
UPF1-202ENST00000594243 TRBV5-7A0A0A0MS05 114 aa12.4□□□□□ -0.42
UPF1-202ENST00000594243 IGKV1-12A0A0C4DH73 117 aa12.4□□□□□ -0.42
UPF1-202ENST00000594243 A0A1W2PPH5 198 aa12.4□□□□□ -0.42
UPF1-202ENST00000594243 A0A1W2PQ09 198 aa12.4□□□□□ -0.42
UPF1-202ENST00000594243 K7N7A8 449 aa12.4□□□□□ -0.42
UPF1-202ENST00000594243 SH2D1BO14796 132 aa12.4□□□□□ -0.42
UPF1-202ENST00000594243 MRPS14O60783 128 aaKnown RBP12.4□□□□□ -0.42
UPF1-202ENST00000594243 IGKV1D-12P01611 117 aa12.4□□□□□ -0.42
UPF1-202ENST00000594243 MMP9P14780 707 aa12.4□□□□□ -0.42
UPF1-202ENST00000594243 FSTP19883 344 aa12.4□□□□□ -0.42
UPF1-202ENST00000594243 ZNF93P35789 620 aaPredicted RBP12.4□□□□□ -0.42
UPF1-202ENST00000594243 BMXP51813 675 aa12.4□□□□□ -0.42
UPF1-202ENST00000594243 DOC2BQ14184 412 aa12.4□□□□□ -0.42
UPF1-202ENST00000594243 DDI2Q5TDH0 399 aa12.4□□□□□ -0.42
UPF1-202ENST00000594243 RNF144BQ7Z419 303 aa12.4□□□□□ -0.42
UPF1-202ENST00000594243 BPIFB2Q8N4F0 458 aa12.4□□□□□ -0.42
UPF1-202ENST00000594243 KIR3DL3Q8N743 410 aa12.4□□□□□ -0.42
UPF1-202ENST00000594243 ASCC1Q8N9N2 400 aaKnown RBP12.4□□□□□ -0.42
UPF1-202ENST00000594243 UFD1Q92890 307 aa12.4□□□□□ -0.42
UPF1-202ENST00000594243 SNX22Q96L94 193 aa12.4□□□□□ -0.42
UPF1-202ENST00000594243 SUCNR1Q9BXA5 334 aa12.4□□□□□ -0.42
UPF1-202ENST00000594243 YTHDF1Q9BYJ9 559 aaKnown RBP12.4□□□□□ -0.42
UPF1-202ENST00000594243 MS4A7Q9GZW8 240 aaPredicted RBP12.4□□□□□ -0.42
UPF1-202ENST00000594243 SIRPDQ9H106 197 aa12.4□□□□□ -0.42
UPF1-202ENST00000594243 ONECUT1Q9UBC0 465 aa12.4□□□□□ -0.42
UPF1-202ENST00000594243 A0A1W2PPK0 400 aa12.39□□□□□ -0.43
UPF1-202ENST00000594243 GABRPO00591 440 aa12.39□□□□□ -0.43
UPF1-202ENST00000594243 HAND1O96004 215 aa12.39□□□□□ -0.43
UPF1-202ENST00000594243 SFTPBP07988 381 aa12.39□□□□□ -0.43
UPF1-202ENST00000594243 HSMCR30P0CW71 290 aa12.39□□□□□ -0.43
UPF1-202ENST00000594243 MTNR1BP49286 362 aa12.39□□□□□ -0.43
UPF1-202ENST00000594243 GABARAPL2P60520 117 aa12.39□□□□□ -0.43
UPF1-202ENST00000594243 BLMHQ13867 455 aa12.39□□□□□ -0.43
UPF1-202ENST00000594243 ACSM3Q53FZ2 586 aa12.39□□□□□ -0.43
UPF1-202ENST00000594243 GPR157Q5UAW9 335 aa12.39□□□□□ -0.43
UPF1-202ENST00000594243 C1orf122Q6ZSJ8 110 aa12.39□□□□□ -0.43
UPF1-202ENST00000594243 USP43Q70EL4 1123 aa12.39□□□□□ -0.43
UPF1-202ENST00000594243 CDH26Q8IXH8 852 aa12.39□□□□□ -0.43
UPF1-202ENST00000594243 PPP1R35Q8TAP8 253 aa12.39□□□□□ -0.43
UPF1-202ENST00000594243 TNFAIP8L1Q8WVP5 186 aa12.39□□□□□ -0.43
UPF1-202ENST00000594243 ORAI1Q96D31 301 aa12.39□□□□□ -0.43
UPF1-202ENST00000594243 DERL3Q96Q80 235 aa12.39□□□□□ -0.43
UPF1-202ENST00000594243 S100A13Q99584 98 aa12.39□□□□□ -0.43
UPF1-202ENST00000594243 FAM192AQ9GZU8 254 aa12.39□□□□□ -0.43
UPF1-202ENST00000594243 EXOSC4Q9NPD3 245 aaKnown RBP12.39□□□□□ -0.43
UPF1-202ENST00000594243 GSTK1Q9Y2Q3 226 aa12.39□□□□□ -0.43
UPF1-202ENST00000594243 ARHGAP32A7KAX9 2087 aa12.39□□□□□ -0.43
UPF1-202ENST00000594243 COL6A5A8TX70 2615 aa12.38□□□□□ -0.43
UPF1-202ENST00000594243 TRAV40A0A0B4J280 105 aa12.38□□□□□ -0.43
UPF1-202ENST00000594243 M0R1W7 72 aa12.38□□□□□ -0.43
UPF1-202ENST00000594243 RRP9O43818 475 aaKnown RBP12.38□□□□□ -0.43
UPF1-202ENST00000594243 IGHV4-38-2P0DP08 117 aa12.38□□□□□ -0.43
UPF1-202ENST00000594243 CALCBP10092 127 aa12.38□□□□□ -0.43
UPF1-202ENST00000594243 DUSP1P28562 367 aa12.38□□□□□ -0.43
UPF1-202ENST00000594243 PTGFRP43088 359 aa12.38□□□□□ -0.43
UPF1-202ENST00000594243 RPL31P62899 125 aaKnown RBP12.38□□□□□ -0.43
UPF1-202ENST00000594243 MLLT11Q13015 90 aaPredicted RBP12.38□□□□□ -0.43
UPF1-202ENST00000594243 TPBGQ13641 420 aa12.38□□□□□ -0.43
UPF1-202ENST00000594243 RSU1Q15404 277 aa12.38□□□□□ -0.43
UPF1-202ENST00000594243 TRAM1Q15629 374 aa12.38□□□□□ -0.43
UPF1-202ENST00000594243 LIPKQ5VXJ0 399 aa12.38□□□□□ -0.43
UPF1-202ENST00000594243 ELP2Q6IA86 826 aa12.38□□□□□ -0.43
UPF1-202ENST00000594243 UNQ9370/PRO34162Q6UXP9 181 aa12.38□□□□□ -0.43
UPF1-202ENST00000594243 RBMS3Q6XE24 437 aaKnown RBP12.38□□□□□ -0.43
UPF1-202ENST00000594243 GDPD3Q7L5L3 318 aa12.38□□□□□ -0.43
UPF1-202ENST00000594243 FAM185AQ8N0U4 392 aa12.38□□□□□ -0.43
UPF1-202ENST00000594243 C22orf15Q8WYQ4 148 aa12.38□□□□□ -0.43
UPF1-202ENST00000594243 JMJD8Q96S16 334 aa12.38□□□□□ -0.43
UPF1-202ENST00000594243 TBX15Q96SF7 602 aa12.38□□□□□ -0.43
UPF1-202ENST00000594243 MGLLQ99685 303 aa12.38□□□□□ -0.43
UPF1-202ENST00000594243 TMED9Q9BVK6 235 aa12.38□□□□□ -0.43
UPF1-202ENST00000594243 METTL9Q9H1A3 318 aa12.38□□□□□ -0.43
UPF1-202ENST00000594243 ELL3Q9HB65 397 aaPredicted RBP12.38□□□□□ -0.43
UPF1-202ENST00000594243 NOX4Q9NPH5 578 aa12.38□□□□□ -0.43
UPF1-202ENST00000594243 PCDHB16Q9NRJ7 776 aa12.38□□□□□ -0.43
UPF1-202ENST00000594243 ZNF69Q9UC07 566 aa12.38□□□□□ -0.43
UPF1-202ENST00000594243 ING4Q9UNL4 249 aa12.38□□□□□ -0.43
UPF1-202ENST00000594243 TRAV8-7A0A075B6U6 113 aa12.37□□□□□ -0.43
UPF1-202ENST00000594243 IGHV3OR16-10A0A075B7F0 116 aa12.37□□□□□ -0.43
UPF1-202ENST00000594243 CENPVL3A0A0U1RRI6 287 aa12.37□□□□□ -0.43
UPF1-202ENST00000594243 MEGF11A6BM72 1044 aa12.37□□□□□ -0.43
UPF1-202ENST00000594243 ZNF780AO75290 641 aaPredicted RBP12.37□□□□□ -0.43
UPF1-202ENST00000594243 ZNF737O75373 536 aa12.37□□□□□ -0.43
UPF1-202ENST00000594243 MAS1P04201 325 aa12.37□□□□□ -0.43
UPF1-202ENST00000594243 GABRR1P24046 479 aa12.37□□□□□ -0.43
UPF1-202ENST00000594243 PSMA1P25786 263 aaKnown RBP12.37□□□□□ -0.43
UPF1-202ENST00000594243 LMO1P25800 156 aa12.37□□□□□ -0.43
UPF1-202ENST00000594243 MAP2K4P45985 399 aa12.37□□□□□ -0.43
UPF1-202ENST00000594243 SNU13P55769 128 aaKnown RBP12.37□□□□□ -0.43
UPF1-202ENST00000594243 TBCEQ15813 527 aaPredicted RBP12.37□□□□□ -0.43
UPF1-202ENST00000594243 ASCL4Q6XD76 172 aa12.37□□□□□ -0.43
UPF1-202ENST00000594243 C9orf139Q6ZV77 190 aa12.37□□□□□ -0.43
UPF1-202ENST00000594243 VMO1Q7Z5L0 202 aa12.37□□□□□ -0.43
UPF1-202ENST00000594243 OR8H2Q8N162 312 aa12.37□□□□□ -0.43
UPF1-202ENST00000594243 LHX4Q969G2 390 aa12.37□□□□□ -0.43
UPF1-202ENST00000594243 SLC6A7Q99884 636 aa12.37□□□□□ -0.43
UPF1-202ENST00000594243 TCF7L1Q9HCS4 588 aa12.37□□□□□ -0.43
UPF1-202ENST00000594243 C19orf12Q9NSK7 152 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms