RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 TRBV5-7A0A0A0MS05 114 aa11.99□□□□□ -0.49
VRK3-206ENST00000594090 A0A0A6YYJ9 748 aa11.99□□□□□ -0.49
VRK3-206ENST00000594090 A0A1W2PQ09 198 aa11.99□□□□□ -0.49
VRK3-206ENST00000594090 K7N7A8 449 aa11.99□□□□□ -0.49
VRK3-206ENST00000594090 HAND1O96004 215 aa11.99□□□□□ -0.49
VRK3-206ENST00000594090 CHRM2P08172 466 aa11.99□□□□□ -0.49
VRK3-206ENST00000594090 TMEM225BP0DP42 221 aa11.99□□□□□ -0.49
VRK3-206ENST00000594090 FSTP19883 344 aa11.99□□□□□ -0.49
VRK3-206ENST00000594090 ZNF146Q15072 292 aa11.99□□□□□ -0.49
VRK3-206ENST00000594090 SPIN3Q5JUX0 258 aa11.99□□□□□ -0.49
VRK3-206ENST00000594090 DDI2Q5TDH0 399 aa11.99□□□□□ -0.49
VRK3-206ENST00000594090 GPR157Q5UAW9 335 aa11.99□□□□□ -0.49
VRK3-206ENST00000594090 C9orf139Q6ZV77 190 aa11.99□□□□□ -0.49
VRK3-206ENST00000594090 USP43Q70EL4 1123 aa11.99□□□□□ -0.49
VRK3-206ENST00000594090 PRSS48Q7RTY5 328 aa11.99□□□□□ -0.49
VRK3-206ENST00000594090 SATL1Q86VE3 508 aa11.99□□□□□ -0.49
VRK3-206ENST00000594090 CMTM4Q8IZR5 234 aa11.99□□□□□ -0.49
VRK3-206ENST00000594090 BCL6BQ8N143 479 aaPredicted RBP11.99□□□□□ -0.49
VRK3-206ENST00000594090 DERL3Q96Q80 235 aa11.99□□□□□ -0.49
VRK3-206ENST00000594090 GPER1Q99527 375 aa11.99□□□□□ -0.49
VRK3-206ENST00000594090 MDFIQ99750 246 aa11.99□□□□□ -0.49
VRK3-206ENST00000594090 CCDC90BQ9GZT6 254 aa11.99□□□□□ -0.49
VRK3-206ENST00000594090 MS4A7Q9GZW8 240 aaPredicted RBP11.99□□□□□ -0.49
VRK3-206ENST00000594090 SEBOXQ9HB31 216 aaPredicted RBP11.99□□□□□ -0.49
VRK3-206ENST00000594090 RHOFQ9HBH0 211 aa11.99□□□□□ -0.49
VRK3-206ENST00000594090 TMEM138Q9NPI0 162 aa11.99□□□□□ -0.49
VRK3-206ENST00000594090 BLOC1S6Q9UL45 172 aa11.99□□□□□ -0.49
VRK3-206ENST00000594090 TRAV8-7A0A075B6U6 113 aa11.98□□□□□ -0.49
VRK3-206ENST00000594090 ZNF737O75373 536 aa11.98□□□□□ -0.49
VRK3-206ENST00000594090 GPX5O75715 221 aa11.98□□□□□ -0.49
VRK3-206ENST00000594090 BDKRB2P30411 391 aa11.98□□□□□ -0.49
VRK3-206ENST00000594090 SNU13P55769 128 aaKnown RBP11.98□□□□□ -0.49
VRK3-206ENST00000594090 HILS1P60008 231 aa11.98□□□□□ -0.49
VRK3-206ENST00000594090 PDCD1Q15116 288 aa11.98□□□□□ -0.49
VRK3-206ENST00000594090 KRTAP24-1Q3LI83 254 aa11.98□□□□□ -0.49
VRK3-206ENST00000594090 VMO1Q7Z5L0 202 aa11.98□□□□□ -0.49
VRK3-206ENST00000594090 FAM185AQ8N0U4 392 aa11.98□□□□□ -0.49
VRK3-206ENST00000594090 Q8N7P7 452 aa11.98□□□□□ -0.49
VRK3-206ENST00000594090 PXT1Q8NFP0 134 aa11.98□□□□□ -0.49
VRK3-206ENST00000594090 TNFAIP8L1Q8WVP5 186 aa11.98□□□□□ -0.49
VRK3-206ENST00000594090 THRSPQ92748 146 aa11.98□□□□□ -0.49
VRK3-206ENST00000594090 NKX3-1Q99801 234 aaPredicted RBP11.98□□□□□ -0.49
VRK3-206ENST00000594090 FAM192AQ9GZU8 254 aa11.98□□□□□ -0.49
VRK3-206ENST00000594090 Q9H521 79 aa11.98□□□□□ -0.49
VRK3-206ENST00000594090 C19orf12Q9NSK7 152 aa11.98□□□□□ -0.49
VRK3-206ENST00000594090 CKLFQ9UBR5 152 aa11.98□□□□□ -0.49
VRK3-206ENST00000594090 CENPVL3A0A0U1RRI6 287 aa11.97□□□□□ -0.49
VRK3-206ENST00000594090 A0A1W2PPK0 400 aa11.97□□□□□ -0.49
VRK3-206ENST00000594090 MAGEA13PA6NCF6 341 aa11.97□□□□□ -0.49
VRK3-206ENST00000594090 RNF212BA8MTL3 300 aa11.97□□□□□ -0.49
VRK3-206ENST00000594090 M0R1W7 72 aa11.97□□□□□ -0.49
VRK3-206ENST00000594090 VENTXO95231 258 aa11.97□□□□□ -0.49
VRK3-206ENST00000594090 DUSP1P28562 367 aa11.97□□□□□ -0.49
VRK3-206ENST00000594090 OR3A4PP47883 348 aa11.97□□□□□ -0.49
VRK3-206ENST00000594090 RPL31P62899 125 aaKnown RBP11.97□□□□□ -0.49
VRK3-206ENST00000594090 BRD3OSQ6XYD6 125 aa11.97□□□□□ -0.49
VRK3-206ENST00000594090 C17orf107Q6ZR85 190 aa11.97□□□□□ -0.49
VRK3-206ENST00000594090 OR8H2Q8N162 312 aa11.97□□□□□ -0.49
VRK3-206ENST00000594090 OR4M1Q8NGD0 313 aa11.97□□□□□ -0.49
VRK3-206ENST00000594090 TMEM158Q8WZ71 300 aa11.97□□□□□ -0.49
VRK3-206ENST00000594090 LHX4Q969G2 390 aa11.97□□□□□ -0.49
VRK3-206ENST00000594090 ZNF48Q96MX3 618 aaPredicted RBP11.97□□□□□ -0.49
VRK3-206ENST00000594090 SIRT7Q9NRC8 400 aa11.97□□□□□ -0.49
VRK3-206ENST00000594090 GLS2Q9UI32 602 aa11.97□□□□□ -0.49
VRK3-206ENST00000594090 FOXJ3Q9UPW0 622 aa11.97□□□□□ -0.49
VRK3-206ENST00000594090 GSTK1Q9Y2Q3 226 aa11.97□□□□□ -0.49
VRK3-206ENST00000594090 FBN1P35555 2871 aaKnown RBP11.97□□□□□ -0.49
VRK3-206ENST00000594090 TMEM82A0PJX8 343 aa11.96□□□□□ -0.49
VRK3-206ENST00000594090 PIN1P1O15428 100 aa11.96□□□□□ -0.49
VRK3-206ENST00000594090 DENRO43583 198 aaKnown RBP11.96□□□□□ -0.49
VRK3-206ENST00000594090 GABRR1P24046 479 aa11.96□□□□□ -0.49
VRK3-206ENST00000594090 EEF1B2P24534 225 aaKnown RBP11.96□□□□□ -0.49
VRK3-206ENST00000594090 MAPK3P27361 379 aaPredicted RBP11.96□□□□□ -0.49
VRK3-206ENST00000594090 ZNF93P35789 620 aaPredicted RBP11.96□□□□□ -0.49
VRK3-206ENST00000594090 TGFBR2P37173 567 aa11.96□□□□□ -0.49
VRK3-206ENST00000594090 MTNR1BP49286 362 aa11.96□□□□□ -0.49
VRK3-206ENST00000594090 BMXP51813 675 aa11.96□□□□□ -0.49
VRK3-206ENST00000594090 BPIFB3P59826 476 aa11.96□□□□□ -0.49
VRK3-206ENST00000594090 RUSC1-AS1Q66K80 236 aa11.96□□□□□ -0.49
VRK3-206ENST00000594090 METAP1DQ6UB28 335 aaPredicted RBP11.96□□□□□ -0.49
VRK3-206ENST00000594090 SIGLECL1Q8N7X8 197 aa11.96□□□□□ -0.49
VRK3-206ENST00000594090 UFD1Q92890 307 aa11.96□□□□□ -0.49
VRK3-206ENST00000594090 SNX22Q96L94 193 aa11.96□□□□□ -0.49
VRK3-206ENST00000594090 TMED9Q9BVK6 235 aa11.96□□□□□ -0.49
VRK3-206ENST00000594090 EXOSC4Q9NPD3 245 aaKnown RBP11.96□□□□□ -0.49
VRK3-206ENST00000594090 NOX4Q9NPH5 578 aa11.96□□□□□ -0.49
VRK3-206ENST00000594090 SOX21Q9Y651 276 aaPredicted RBP11.96□□□□□ -0.49
VRK3-206ENST00000594090 IGHV1-69DA0A0B4J2H0 117 aa11.95□□□□□ -0.5
VRK3-206ENST00000594090 SH2D1BO14796 132 aa11.95□□□□□ -0.5
VRK3-206ENST00000594090 PSPNO60542 156 aa11.95□□□□□ -0.5
VRK3-206ENST00000594090 OR2H2O95918 312 aa11.95□□□□□ -0.5
VRK3-206ENST00000594090 IGHV1-69P01742 117 aa11.95□□□□□ -0.5
VRK3-206ENST00000594090 PTGFRP43088 359 aa11.95□□□□□ -0.5
VRK3-206ENST00000594090 MAP2K4P45985 399 aa11.95□□□□□ -0.5
VRK3-206ENST00000594090 DLX1P56177 255 aa11.95□□□□□ -0.5
VRK3-206ENST00000594090 MLLT11Q13015 90 aaPredicted RBP11.95□□□□□ -0.5
VRK3-206ENST00000594090 GPR50Q13585 617 aa11.95□□□□□ -0.5
VRK3-206ENST00000594090 BLMHQ13867 455 aa11.95□□□□□ -0.5
VRK3-206ENST00000594090 INSL4Q14641 139 aa11.95□□□□□ -0.5
VRK3-206ENST00000594090 TBCEQ15813 527 aaPredicted RBP11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms