RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 TMEM211Q6ICI0 200 aa16.91■□□□□ 0.3
CLIP3-206ENST00000593074 Q6ZPA2 131 aa16.91■□□□□ 0.3
CLIP3-206ENST00000593074 MDP1Q86V88 176 aa16.91■□□□□ 0.3
CLIP3-206ENST00000593074 MARS2Q96GW9 593 aaKnown RBP16.91■□□□□ 0.3
CLIP3-206ENST00000593074 AQP7O14520 342 aa16.9■□□□□ 0.3
CLIP3-206ENST00000593074 OR7C1O76099 320 aaPredicted RBP16.9■□□□□ 0.3
CLIP3-206ENST00000593074 IFNA2P01563 188 aa16.9■□□□□ 0.3
CLIP3-206ENST00000593074 FGF12P61328 243 aa16.9■□□□□ 0.3
CLIP3-206ENST00000593074 AANATQ16613 207 aa16.9■□□□□ 0.3
CLIP3-206ENST00000593074 PLEKHN1Q494U1 663 aaPredicted RBP16.9■□□□□ 0.3
CLIP3-206ENST00000593074 RGS7BPQ6MZT1 257 aaPredicted RBP16.9■□□□□ 0.3
CLIP3-206ENST00000593074 ZADH2Q8N4Q0 377 aa16.9■□□□□ 0.3
CLIP3-206ENST00000593074 OR5A2Q8NGI9 324 aa16.9■□□□□ 0.3
CLIP3-206ENST00000593074 SLAMF9Q96A28 289 aa16.9■□□□□ 0.3
CLIP3-206ENST00000593074 ZNF286AQ9HBT8 521 aa16.9■□□□□ 0.3
CLIP3-206ENST00000593074 CRYM-AS1A6NIL9 109 aa16.9■□□□□ 0.3
CLIP3-206ENST00000593074 MPTX1A8MV57 137 aa16.9■□□□□ 0.3
CLIP3-206ENST00000593074 PRSS44E7EML9 344 aa16.9■□□□□ 0.3
CLIP3-206ENST00000593074 SLC22A25Q6T423 547 aa16.9■□□□□ 0.3
CLIP3-206ENST00000593074 INO80EQ8NBZ0 244 aaPredicted RBP16.9■□□□□ 0.3
CLIP3-206ENST00000593074 SLC30A7Q8NEW0 376 aa16.9■□□□□ 0.3
CLIP3-206ENST00000593074 TRIB1Q96RU8 372 aa16.9■□□□□ 0.3
CLIP3-206ENST00000593074 ZFHX2Q9C0A1 2572 aaPredicted RBP16.89■□□□□ 0.29
CLIP3-206ENST00000593074 hCG_1807616A0A1W2PRN6 198 aa16.89■□□□□ 0.29
CLIP3-206ENST00000593074 FAM221AA4D161 298 aa16.89■□□□□ 0.29
CLIP3-206ENST00000593074 ZNF732B4DXR9 585 aa16.89■□□□□ 0.29
CLIP3-206ENST00000593074 TPD52L2O43399 206 aaKnown RBP16.89■□□□□ 0.29
CLIP3-206ENST00000593074 PDCD1Q15116 288 aa16.89■□□□□ 0.29
CLIP3-206ENST00000593074 OR5P3Q8WZ94 311 aa16.89■□□□□ 0.29
CLIP3-206ENST00000593074 RNF126Q9BV68 326 aa16.89■□□□□ 0.29
CLIP3-206ENST00000593074 C1orf123Q9NWV4 160 aa16.89■□□□□ 0.29
CLIP3-206ENST00000593074 ZNF292O60281 2723 aa16.89■□□□□ 0.29
CLIP3-206ENST00000593074 I3L521 148 aa16.89■□□□□ 0.29
CLIP3-206ENST00000593074 WISP2O76076 250 aa16.89■□□□□ 0.29
CLIP3-206ENST00000593074 PDGFAP04085 211 aa16.89■□□□□ 0.29
CLIP3-206ENST00000593074 LYL1P12980 280 aa16.89■□□□□ 0.29
CLIP3-206ENST00000593074 TFAP2EQ6VUC0 442 aa16.89■□□□□ 0.29
CLIP3-206ENST00000593074 BATF2Q8N1L9 274 aa16.89■□□□□ 0.29
CLIP3-206ENST00000593074 SARAFQ96BY9 339 aa16.89■□□□□ 0.29
CLIP3-206ENST00000593074 CXorf58Q96LI9 332 aa16.89■□□□□ 0.29
CLIP3-206ENST00000593074 C2orf50Q96LR7 162 aa16.89■□□□□ 0.29
CLIP3-206ENST00000593074 REG4Q9BYZ8 158 aa16.89■□□□□ 0.29
CLIP3-206ENST00000593074 ZNF442Q9H7R0 627 aa16.89■□□□□ 0.29
CLIP3-206ENST00000593074 MTCH1Q9NZJ7 389 aa16.89■□□□□ 0.29
CLIP3-206ENST00000593074 RCC2Q9P258 522 aaKnown RBP16.89■□□□□ 0.29
CLIP3-206ENST00000593074 MPC1Q9Y5U8 109 aa16.89■□□□□ 0.29
CLIP3-206ENST00000593074 RIF1Q5UIP0 2472 aaKnown RBP16.88■□□□□ 0.29
CLIP3-206ENST00000593074 POM121CA8CG34 1229 aa16.88■□□□□ 0.29
CLIP3-206ENST00000593074 J3QW42 95 aa16.88■□□□□ 0.29
CLIP3-206ENST00000593074 IL15RAQ13261 267 aa16.88■□□□□ 0.29
CLIP3-206ENST00000593074 GUSBP1Q15486 140 aa16.88■□□□□ 0.29
CLIP3-206ENST00000593074 CCDC28AQ8IWP9 274 aa16.88■□□□□ 0.29
CLIP3-206ENST00000593074 SGPP2Q8IWX5 399 aa16.88■□□□□ 0.29
CLIP3-206ENST00000593074 MKXQ8IYA7 352 aa16.88■□□□□ 0.29
CLIP3-206ENST00000593074 POC1AQ8NBT0 407 aa16.88■□□□□ 0.29
CLIP3-206ENST00000593074 OR5L1Q8NGL2 311 aa16.88■□□□□ 0.29
CLIP3-206ENST00000593074 OR10C1Q96KK4 312 aa16.88■□□□□ 0.29
CLIP3-206ENST00000593074 METTL8Q9H825 291 aaKnown RBP16.88■□□□□ 0.29
CLIP3-206ENST00000593074 MED12LQ86YW9 2145 aa16.88■□□□□ 0.29
CLIP3-206ENST00000593074 ANKRD30BLA7E2S9 258 aa16.87■□□□□ 0.29
CLIP3-206ENST00000593074 F8VVB4 439 aa16.87■□□□□ 0.29
CLIP3-206ENST00000593074 F8VWA3 439 aa16.87■□□□□ 0.29
CLIP3-206ENST00000593074 H0YIZ8 118 aa16.87■□□□□ 0.29
CLIP3-206ENST00000593074 RBMXP38159 391 aaKnown RBP16.87■□□□□ 0.29
CLIP3-206ENST00000593074 LUMP51884 338 aaPredicted RBP16.87■□□□□ 0.29
CLIP3-206ENST00000593074 MPV17LQ2QL34 196 aa16.87■□□□□ 0.29
CLIP3-206ENST00000593074 BEX5Q5H9J7 111 aa16.87■□□□□ 0.29
CLIP3-206ENST00000593074 Q6ZS49 121 aa16.87■□□□□ 0.29
CLIP3-206ENST00000593074 BHLHE23Q8NDY6 225 aa16.87■□□□□ 0.29
CLIP3-206ENST00000593074 DCUN1D4Q92564 292 aa16.87■□□□□ 0.29
CLIP3-206ENST00000593074 EXTL1Q92935 676 aa16.87■□□□□ 0.29
CLIP3-206ENST00000593074 RBPMSQ93062 196 aaKnown RBP16.87■□□□□ 0.29
CLIP3-206ENST00000593074 PHYHIPLQ96FC7 376 aa16.87■□□□□ 0.29
CLIP3-206ENST00000593074 HIST1H2AAQ96QV6 131 aa16.87■□□□□ 0.29
CLIP3-206ENST00000593074 MFSD2BA6NFX1 497 aa16.87■□□□□ 0.29
CLIP3-206ENST00000593074 OR5B21A6NL26 309 aa16.87■□□□□ 0.29
CLIP3-206ENST00000593074 LILRA1O75019 489 aa16.87■□□□□ 0.29
CLIP3-206ENST00000593074 ZNF728P0DKX0 622 aa16.87■□□□□ 0.29
CLIP3-206ENST00000593074 ZNF14P17017 642 aaPredicted RBP16.87■□□□□ 0.29
CLIP3-206ENST00000593074 TBC1D28Q2M2D7 210 aa16.87■□□□□ 0.29
CLIP3-206ENST00000593074 PRSS54Q6PEW0 395 aa16.87■□□□□ 0.29
CLIP3-206ENST00000593074 FAM214BQ7L5A3 538 aa16.87■□□□□ 0.29
CLIP3-206ENST00000593074 OR1S1Q8NH92 325 aa16.87■□□□□ 0.29
CLIP3-206ENST00000593074 PIK3IP1Q96FE7 263 aa16.87■□□□□ 0.29
CLIP3-206ENST00000593074 HS3ST6Q96QI5 342 aa16.87■□□□□ 0.29
CLIP3-206ENST00000593074 MICU1Q9BPX6 476 aa16.87■□□□□ 0.29
CLIP3-206ENST00000593074 SLC25A32Q9H2D1 315 aa16.87■□□□□ 0.29
CLIP3-206ENST00000593074 FAM186AA6NE01 2351 aa16.87■□□□□ 0.29
CLIP3-206ENST00000593074 TEX13DA0A0J9YY54 714 aaPredicted RBP16.86■□□□□ 0.29
CLIP3-206ENST00000593074 TRAPPC2LH3BP13 241 aa16.86■□□□□ 0.29
CLIP3-206ENST00000593074 SHOXO15266 292 aa16.86■□□□□ 0.29
CLIP3-206ENST00000593074 PIGPP57054 158 aa16.86■□□□□ 0.29
CLIP3-206ENST00000593074 ZNF169Q14929 603 aaPredicted RBP16.86■□□□□ 0.29
CLIP3-206ENST00000593074 SRSF7Q16629 238 aaKnown RBP eCLIP16.86■□□□□ 0.29
CLIP3-206ENST00000593074 ASCL5Q7RTU5 278 aa16.86■□□□□ 0.29
CLIP3-206ENST00000593074 GCNT2Q8N0V5 402 aa16.86■□□□□ 0.29
CLIP3-206ENST00000593074 TOMM40LQ969M1 308 aa16.86■□□□□ 0.29
CLIP3-206ENST00000593074 MOB3AQ96BX8 217 aa16.86■□□□□ 0.29
CLIP3-206ENST00000593074 DMRTA2Q96SC8 542 aa16.86■□□□□ 0.29
CLIP3-206ENST00000593074 ARPC5LQ9BPX5 153 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms