RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 BRICD5Q6PL45 260 aa8.71□□□□□ -1.02
VPS53-220ENST00000576149 CALHM1Q8IU99 346 aa8.71□□□□□ -1.02
VPS53-220ENST00000576149 DYRK2Q92630 601 aa8.71□□□□□ -1.02
VPS53-220ENST00000576149 SLC6A15Q9H2J7 730 aa8.71□□□□□ -1.02
VPS53-220ENST00000576149 PLSCR4Q9NRQ2 329 aa8.71□□□□□ -1.02
VPS53-220ENST00000576149 PLA2G3Q9NZ20 509 aa8.71□□□□□ -1.02
VPS53-220ENST00000576149 GSKIPQ9P0R6 139 aa8.71□□□□□ -1.02
VPS53-220ENST00000576149 FREM2Q5SZK8 3169 aa8.7□□□□□ -1.02
VPS53-220ENST00000576149 A0A096LPE4 126 aa8.7□□□□□ -1.02
VPS53-220ENST00000576149 A0A1W2PPZ6 126 aa8.7□□□□□ -1.02
VPS53-220ENST00000576149 FAM166BA8MTA8 275 aa8.7□□□□□ -1.02
VPS53-220ENST00000576149 TXNL1O43396 289 aa8.7□□□□□ -1.02
VPS53-220ENST00000576149 PDCD6O75340 191 aa8.7□□□□□ -1.02
VPS53-220ENST00000576149 SYNGR4O95473 234 aa8.7□□□□□ -1.02
VPS53-220ENST00000576149 MT-CO3P00414 261 aa8.7□□□□□ -1.02
VPS53-220ENST00000576149 SELLP14151 372 aa8.7□□□□□ -1.02
VPS53-220ENST00000576149 RBM11P57052 281 aaKnown RBP8.7□□□□□ -1.02
VPS53-220ENST00000576149 AIMP2Q13155 320 aaKnown RBP8.7□□□□□ -1.02
VPS53-220ENST00000576149 C9orf135Q5VTT2 229 aa8.7□□□□□ -1.02
VPS53-220ENST00000576149 TFAP2EQ6VUC0 442 aa8.7□□□□□ -1.02
VPS53-220ENST00000576149 LINC00696Q6ZRV3 163 aa8.7□□□□□ -1.02
VPS53-220ENST00000576149 TMEM251Q8N6I4 163 aa8.7□□□□□ -1.02
VPS53-220ENST00000576149 PIGMQ9H3S5 423 aa8.7□□□□□ -1.02
VPS53-220ENST00000576149 RNF122Q9H9V4 155 aa8.7□□□□□ -1.02
VPS53-220ENST00000576149 CALHM2Q9HA72 323 aa8.7□□□□□ -1.02
VPS53-220ENST00000576149 TMEM100Q9NV29 134 aa8.7□□□□□ -1.02
VPS53-220ENST00000576149 ZNF724A8MTY0 619 aa8.7□□□□□ -1.02
VPS53-220ENST00000576149 BET1O15155 118 aa8.7□□□□□ -1.02
VPS53-220ENST00000576149 ZNF728P0DKX0 622 aa8.7□□□□□ -1.02
VPS53-220ENST00000576149 PMELP40967 661 aa8.7□□□□□ -1.02
VPS53-220ENST00000576149 PCP4P48539 62 aa8.7□□□□□ -1.02
VPS53-220ENST00000576149 FOXG1P55316 489 aaPredicted RBP8.7□□□□□ -1.02
VPS53-220ENST00000576149 PIGPP57054 158 aa8.7□□□□□ -1.02
VPS53-220ENST00000576149 MALLQ13021 153 aa8.7□□□□□ -1.02
VPS53-220ENST00000576149 BTN1A1Q13410 526 aa8.7□□□□□ -1.02
VPS53-220ENST00000576149 DAZAP2Q15038 168 aaPredicted RBP8.7□□□□□ -1.02
VPS53-220ENST00000576149 IAH1Q2TAA2 248 aaPredicted RBP8.7□□□□□ -1.02
VPS53-220ENST00000576149 ZNF611Q8N823 705 aa8.7□□□□□ -1.02
VPS53-220ENST00000576149 Q8NFD4 153 aa8.7□□□□□ -1.02
VPS53-220ENST00000576149 OR1S2Q8NGQ3 325 aa8.7□□□□□ -1.02
VPS53-220ENST00000576149 FNDC9Q8TBE3 224 aa8.7□□□□□ -1.02
VPS53-220ENST00000576149 MARS2Q96GW9 593 aaKnown RBP8.7□□□□□ -1.02
VPS53-220ENST00000576149 CNTNAP3BQ96NU0 1288 aa8.7□□□□□ -1.02
VPS53-220ENST00000576149 CNTNAP3Q9BZ76 1288 aa8.7□□□□□ -1.02
VPS53-220ENST00000576149 SLC5A7Q9GZV3 580 aa8.7□□□□□ -1.02
VPS53-220ENST00000576149 MS4A7Q9GZW8 240 aaPredicted RBP8.7□□□□□ -1.02
VPS53-220ENST00000576149 PCDHB10Q9UN67 800 aa8.7□□□□□ -1.02
VPS53-220ENST00000576149 HLA-HP01893 362 aa8.69□□□□□ -1.02
VPS53-220ENST00000576149 COX5BP10606 129 aa8.69□□□□□ -1.02
VPS53-220ENST00000576149 CCNOP22674 350 aa8.69□□□□□ -1.02
VPS53-220ENST00000576149 NPBWR2P48146 333 aa8.69□□□□□ -1.02
VPS53-220ENST00000576149 S100A10P60903 97 aa8.69□□□□□ -1.02
VPS53-220ENST00000576149 TMEM211Q6ICI0 200 aa8.69□□□□□ -1.02
VPS53-220ENST00000576149 ZNF585AQ6P3V2 769 aa8.69□□□□□ -1.02
VPS53-220ENST00000576149 SLC22A25Q6T423 547 aa8.69□□□□□ -1.02
VPS53-220ENST00000576149 SLC25A26Q70HW3 274 aa8.69□□□□□ -1.02
VPS53-220ENST00000576149 FAM219AQ8IW50 185 aa8.69□□□□□ -1.02
VPS53-220ENST00000576149 CCDC36Q8IYA8 594 aa8.69□□□□□ -1.02
VPS53-220ENST00000576149 OR56B2PQ8NGI1 322 aa8.69□□□□□ -1.02
VPS53-220ENST00000576149 MARC2Q969Z3 335 aa8.69□□□□□ -1.02
VPS53-220ENST00000576149 GALNT14Q96FL9 552 aa8.69□□□□□ -1.02
VPS53-220ENST00000576149 PRRG4Q9BZD6 226 aa8.69□□□□□ -1.02
VPS53-220ENST00000576149 LDAHQ9H6V9 325 aa8.69□□□□□ -1.02
VPS53-220ENST00000576149 ZNF286AQ9HBT8 521 aa8.69□□□□□ -1.02
VPS53-220ENST00000576149 C12orf4Q9NQ89 552 aa8.69□□□□□ -1.02
VPS53-220ENST00000576149 IL17BQ9UHF5 180 aa8.69□□□□□ -1.02
VPS53-220ENST00000576149 TUBD1Q9UJT1 453 aa8.69□□□□□ -1.02
VPS53-220ENST00000576149 KCNIP3Q9Y2W7 256 aa8.69□□□□□ -1.02
VPS53-220ENST00000576149 WDFY4Q6ZS81 3184 aa8.69□□□□□ -1.02
VPS53-220ENST00000576149 PQLC2LA1A4F0 135 aa8.69□□□□□ -1.02
VPS53-220ENST00000576149 RAB19A4D1S5 217 aa8.69□□□□□ -1.02
VPS53-220ENST00000576149 C5orf49A4QMS7 147 aa8.69□□□□□ -1.02
VPS53-220ENST00000576149 ZNF503-AS2A6NEH8 195 aa8.69□□□□□ -1.02
VPS53-220ENST00000576149 ZNF205O95201 554 aa8.69□□□□□ -1.02
VPS53-220ENST00000576149 IFNA21P01568 189 aa8.69□□□□□ -1.02
VPS53-220ENST00000576149 CD79AP11912 226 aa8.69□□□□□ -1.02
VPS53-220ENST00000576149 FUT3P21217 361 aa8.69□□□□□ -1.02
VPS53-220ENST00000576149 IL32P24001 234 aa8.69□□□□□ -1.02
VPS53-220ENST00000576149 PDCD1Q15116 288 aa8.69□□□□□ -1.02
VPS53-220ENST00000576149 GGNBP1Q5YKI7 109 aa8.69□□□□□ -1.02
VPS53-220ENST00000576149 UQCC3Q6UW78 93 aa8.69□□□□□ -1.02
VPS53-220ENST00000576149 Q6ZPA2 131 aa8.69□□□□□ -1.02
VPS53-220ENST00000576149 BPIFCQ8NFQ6 507 aa8.69□□□□□ -1.02
VPS53-220ENST00000576149 RNF141Q8WVD5 230 aa8.69□□□□□ -1.02
VPS53-220ENST00000576149 TOMM40LQ969M1 308 aa8.69□□□□□ -1.02
VPS53-220ENST00000576149 NAA60Q9H7X0 242 aa8.69□□□□□ -1.02
VPS53-220ENST00000576149 ASF1BQ9NVP2 202 aa8.69□□□□□ -1.02
VPS53-220ENST00000576149 MSRB2Q9Y3D2 182 aa8.69□□□□□ -1.02
VPS53-220ENST00000576149 TSPAN9O75954 239 aa8.68□□□□□ -1.02
VPS53-220ENST00000576149 OR7C1O76099 320 aaPredicted RBP8.68□□□□□ -1.02
VPS53-220ENST00000576149 APOC3P02656 99 aa8.68□□□□□ -1.02
VPS53-220ENST00000576149 SP1P08047 785 aa8.68□□□□□ -1.02
VPS53-220ENST00000576149 FAM157CP0CG43 387 aa8.68□□□□□ -1.02
VPS53-220ENST00000576149 HKR1P10072 659 aa8.68□□□□□ -1.02
VPS53-220ENST00000576149 CCL2P13500 99 aa8.68□□□□□ -1.02
VPS53-220ENST00000576149 HOXB1P14653 301 aaPredicted RBP8.68□□□□□ -1.02
VPS53-220ENST00000576149 CTRB1P17538 263 aa8.68□□□□□ -1.02
VPS53-220ENST00000576149 FCGR2CP31995 323 aa8.68□□□□□ -1.02
VPS53-220ENST00000576149 PLGLB1Q02325 96 aa8.68□□□□□ -1.02
VPS53-220ENST00000576149 SPEM2Q0P670 501 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms