RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 FGF12P61328 243 aa17.13■□□□□ 0.33
VPS53-210ENST00000571456 ZNF146Q15072 292 aa17.13■□□□□ 0.33
VPS53-210ENST00000571456 RSU1Q15404 277 aa17.13■□□□□ 0.33
VPS53-210ENST00000571456 LRRC10Q5BKY1 277 aa17.13■□□□□ 0.33
VPS53-210ENST00000571456 FAM27D1Q5T7N8 215 aa17.13■□□□□ 0.33
VPS53-210ENST00000571456 FAM166AQ6J272 317 aa17.13■□□□□ 0.33
VPS53-210ENST00000571456 GLCCI1Q86VQ1 547 aa17.13■□□□□ 0.33
VPS53-210ENST00000571456 LYPD6Q86Y78 171 aa17.13■□□□□ 0.33
VPS53-210ENST00000571456 C19orf18Q8NEA5 215 aa17.13■□□□□ 0.33
VPS53-210ENST00000571456 TBC1D15Q8TC07 691 aa17.13■□□□□ 0.33
VPS53-210ENST00000571456 MSI2Q96DH6 328 aaKnown RBP17.13■□□□□ 0.33
VPS53-210ENST00000571456 FAM234AQ9H0X4 552 aa17.13■□□□□ 0.33
VPS53-210ENST00000571456 WNK2Q9Y3S1 2297 aa17.12■□□□□ 0.33
VPS53-210ENST00000571456 H3BUI4 141 aa17.12■□□□□ 0.33
VPS53-210ENST00000571456 NDUFB3O43676 98 aa17.12■□□□□ 0.33
VPS53-210ENST00000571456 ANGPTL7O43827 346 aa17.12■□□□□ 0.33
VPS53-210ENST00000571456 CSTBP04080 98 aaKnown RBP17.12■□□□□ 0.33
VPS53-210ENST00000571456 SRD5A1P18405 259 aa17.12■□□□□ 0.33
VPS53-210ENST00000571456 BCL3P20749 454 aa17.12■□□□□ 0.33
VPS53-210ENST00000571456 NHLRC3Q5JS37 347 aa17.12■□□□□ 0.33
VPS53-210ENST00000571456 C1orf100Q5SVJ3 147 aa17.12■□□□□ 0.33
VPS53-210ENST00000571456 WDR25Q64LD2 544 aaPredicted RBP17.12■□□□□ 0.33
VPS53-210ENST00000571456 LINC00596Q86U02 117 aa17.12■□□□□ 0.33
VPS53-210ENST00000571456 TPRA1Q86W33 373 aa17.12■□□□□ 0.33
VPS53-210ENST00000571456 OR51T1Q8NGJ9 327 aa17.12■□□□□ 0.33
VPS53-210ENST00000571456 OR6M1Q8NGM8 313 aa17.12■□□□□ 0.33
VPS53-210ENST00000571456 ZNF488Q96MN9 340 aa17.12■□□□□ 0.33
VPS53-210ENST00000571456 EXOSC4Q9NPD3 245 aaKnown RBP17.12■□□□□ 0.33
VPS53-210ENST00000571456 OR5V1Q9UGF6 321 aa17.12■□□□□ 0.33
VPS53-210ENST00000571456 MRPS28Q9Y2Q9 187 aaKnown RBP17.12■□□□□ 0.33
VPS53-210ENST00000571456 IGKV1D-17A0A075B6S4 117 aa17.11■□□□□ 0.33
VPS53-210ENST00000571456 IGKV1-12A0A0C4DH73 117 aa17.11■□□□□ 0.33
VPS53-210ENST00000571456 RFPL4AA6NLU0 287 aa17.11■□□□□ 0.33
VPS53-210ENST00000571456 FAM157AC9JC47 383 aa17.11■□□□□ 0.33
VPS53-210ENST00000571456 RFPL4AL1F8VTS6 287 aa17.11■□□□□ 0.33
VPS53-210ENST00000571456 IGKV1D-12P01611 117 aa17.11■□□□□ 0.33
VPS53-210ENST00000571456 SMIM18P0DKX4 95 aa17.11■□□□□ 0.33
VPS53-210ENST00000571456 PRDX2P32119 198 aa17.11■□□□□ 0.33
VPS53-210ENST00000571456 OR3A4PP47883 348 aa17.11■□□□□ 0.33
VPS53-210ENST00000571456 NPBWR2P48146 333 aa17.11■□□□□ 0.33
VPS53-210ENST00000571456 CAV3P56539 151 aa17.11■□□□□ 0.33
VPS53-210ENST00000571456 GMFBP60983 142 aa17.11■□□□□ 0.33
VPS53-210ENST00000571456 IL13RA2Q14627 380 aa17.11■□□□□ 0.33
VPS53-210ENST00000571456 AWAT2Q6E213 333 aa17.11■□□□□ 0.33
VPS53-210ENST00000571456 LYPD2Q6UXB3 125 aa17.11■□□□□ 0.33
VPS53-210ENST00000571456 ZNF841Q6ZN19 808 aa17.11■□□□□ 0.33
VPS53-210ENST00000571456 TEX29Q8N6K0 151 aa17.11■□□□□ 0.33
VPS53-210ENST00000571456 CHST4Q8NCG5 386 aa17.11■□□□□ 0.33
VPS53-210ENST00000571456 PPP1R35Q8TAP8 253 aa17.11■□□□□ 0.33
VPS53-210ENST00000571456 TMEM186Q96B77 213 aa17.11■□□□□ 0.33
VPS53-210ENST00000571456 KCTD7Q96MP8 289 aa17.11■□□□□ 0.33
VPS53-210ENST00000571456 CST11Q9H112 138 aa17.11■□□□□ 0.33
VPS53-210ENST00000571456 PPIL3Q9H2H8 161 aaKnown RBP17.11■□□□□ 0.33
VPS53-210ENST00000571456 CNTD2Q9H8S5 307 aa17.11■□□□□ 0.33
VPS53-210ENST00000571456 ELL3Q9HB65 397 aaPredicted RBP17.11■□□□□ 0.33
VPS53-210ENST00000571456 RBFOX1Q9NWB1 397 aaKnown RBP17.11■□□□□ 0.33
VPS53-210ENST00000571456 TXNL4BQ9NX01 149 aaKnown RBP17.11■□□□□ 0.33
VPS53-210ENST00000571456 KCNS2Q9ULS6 477 aa17.11■□□□□ 0.33
VPS53-210ENST00000571456 J3QLI3 93 aa17.1■□□□□ 0.33
VPS53-210ENST00000571456 SH2D1BO14796 132 aa17.1■□□□□ 0.33
VPS53-210ENST00000571456 TGFAP01135 160 aa17.1■□□□□ 0.33
VPS53-210ENST00000571456 LIPFP07098 398 aa17.1■□□□□ 0.33
VPS53-210ENST00000571456 SFTPBP07988 381 aa17.1■□□□□ 0.33
VPS53-210ENST00000571456 PRKACAP17612 351 aa17.1■□□□□ 0.33
VPS53-210ENST00000571456 ADRA2CP18825 462 aa17.1■□□□□ 0.33
VPS53-210ENST00000571456 CFPP27918 469 aa17.1■□□□□ 0.33
VPS53-210ENST00000571456 GABRA2P47869 451 aa17.1■□□□□ 0.33
VPS53-210ENST00000571456 HNRNPA0Q13151 305 aaKnown RBP17.1■□□□□ 0.33
VPS53-210ENST00000571456 DGUOKQ16854 277 aa17.1■□□□□ 0.33
VPS53-210ENST00000571456 C22orf42Q6IC83 251 aa17.1■□□□□ 0.33
VPS53-210ENST00000571456 OR5T2Q8NGG2 359 aa17.1■□□□□ 0.33
VPS53-210ENST00000571456 OR5D13Q8NGL4 314 aa17.1■□□□□ 0.33
VPS53-210ENST00000571456 GAFA1Q96PS6 74 aa17.1■□□□□ 0.33
VPS53-210ENST00000571456 CCL13Q99616 98 aa17.1■□□□□ 0.33
VPS53-210ENST00000571456 ING4Q9UNL4 249 aa17.1■□□□□ 0.33
VPS53-210ENST00000571456 V9GY05 133 aa17.1■□□□□ 0.33
VPS53-210ENST00000571456 SLC17A2O00624 439 aa17.09■□□□□ 0.33
VPS53-210ENST00000571456 DVL1O14640 695 aa17.09■□□□□ 0.33
VPS53-210ENST00000571456 TMEM127O75204 238 aa17.09■□□□□ 0.33
VPS53-210ENST00000571456 GTF2F2P13984 249 aa17.09■□□□□ 0.33
VPS53-210ENST00000571456 HTR2CP28335 458 aa17.09■□□□□ 0.33
VPS53-210ENST00000571456 RNF144BQ7Z419 303 aa17.09■□□□□ 0.33
VPS53-210ENST00000571456 OR13F1Q8NGS4 319 aa17.09■□□□□ 0.33
VPS53-210ENST00000571456 YIPF6Q96EC8 236 aa17.09■□□□□ 0.33
VPS53-210ENST00000571456 SEH1LQ96EE3 360 aa17.09■□□□□ 0.33
VPS53-210ENST00000571456 CTSZQ9UBR2 303 aa17.09■□□□□ 0.33
VPS53-210ENST00000571456 A0A0G2JMP0 313 aa17.08■□□□□ 0.32
VPS53-210ENST00000571456 A0A0X1KG70 313 aa17.08■□□□□ 0.32
VPS53-210ENST00000571456 F8VVB4 439 aa17.08■□□□□ 0.32
VPS53-210ENST00000571456 F8VWA3 439 aa17.08■□□□□ 0.32
VPS53-210ENST00000571456 SLC22A1O15245 554 aa17.08■□□□□ 0.32
VPS53-210ENST00000571456 BPNT1O95861 308 aa17.08■□□□□ 0.32
VPS53-210ENST00000571456 HAND1O96004 215 aa17.08■□□□□ 0.32
VPS53-210ENST00000571456 AMY2BP19961 511 aa17.08■□□□□ 0.32
VPS53-210ENST00000571456 RAB3BP20337 219 aa17.08■□□□□ 0.32
VPS53-210ENST00000571456 RBMXP38159 391 aaKnown RBP17.08■□□□□ 0.32
VPS53-210ENST00000571456 HOXA4Q00056 320 aaPredicted RBP17.08■□□□□ 0.32
VPS53-210ENST00000571456 GLIPR1L1Q6UWM5 242 aa17.08■□□□□ 0.32
VPS53-210ENST00000571456 BTNL3Q6UXE8 466 aa17.08■□□□□ 0.32
VPS53-210ENST00000571456 C1QL2Q7Z5L3 287 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms