RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 C19orf18Q8NEA5 215 aa17.27■□□□□ 0.36
CLN3-212ENST00000564574 LGALS14Q8TCE9 139 aa17.27■□□□□ 0.36
CLN3-212ENST00000564574 URM1Q9BTM9 101 aaKnown RBP17.27■□□□□ 0.36
CLN3-212ENST00000564574 ST3GAL6Q9Y274 331 aa17.27■□□□□ 0.36
CLN3-212ENST00000564574 POLQO75417 2590 aa17.27■□□□□ 0.35
CLN3-212ENST00000564574 IGHV3OR15-7A0A075B7D8 119 aa17.26■□□□□ 0.35
CLN3-212ENST00000564574 A0A0B4J203 849 aa17.26■□□□□ 0.35
CLN3-212ENST00000564574 ISPDA4D126 451 aa17.26■□□□□ 0.35
CLN3-212ENST00000564574 FAM90A10PA6NDY2 464 aa17.26■□□□□ 0.35
CLN3-212ENST00000564574 FAM90A18PA6NE21 464 aa17.26■□□□□ 0.35
CLN3-212ENST00000564574 FAM90A16PA6NEW6 464 aa17.26■□□□□ 0.35
CLN3-212ENST00000564574 FAM90A20PA6NIJ5 464 aa17.26■□□□□ 0.35
CLN3-212ENST00000564574 FAM90A8PA6NJQ4 464 aa17.26■□□□□ 0.35
CLN3-212ENST00000564574 FAM90A7PA6NKC0 464 aa17.26■□□□□ 0.35
CLN3-212ENST00000564574 FAM90A22PA8MWA6 464 aa17.26■□□□□ 0.35
CLN3-212ENST00000564574 FAM90A12PA8MX19 464 aa17.26■□□□□ 0.35
CLN3-212ENST00000564574 FAM90A5PA8MXJ8 464 aa17.26■□□□□ 0.35
CLN3-212ENST00000564574 FAM90A23PA8MXZ1 464 aa17.26■□□□□ 0.35
CLN3-212ENST00000564574 H3BUI4 141 aa17.26■□□□□ 0.35
CLN3-212ENST00000564574 ZNF205O95201 554 aa17.26■□□□□ 0.35
CLN3-212ENST00000564574 FAM90A15PP0C7V4 464 aa17.26■□□□□ 0.35
CLN3-212ENST00000564574 FAM90A13PP0C7W8 464 aa17.26■□□□□ 0.35
CLN3-212ENST00000564574 FAM90A14PP0C7W9 464 aa17.26■□□□□ 0.35
CLN3-212ENST00000564574 FAM90A24PP0C7X0 464 aa17.26■□□□□ 0.35
CLN3-212ENST00000564574 CPT2P23786 658 aa17.26■□□□□ 0.35
CLN3-212ENST00000564574 RPS27AP62979 156 aaKnown RBP17.26■□□□□ 0.35
CLN3-212ENST00000564574 ATPAF1Q5TC12 328 aaPredicted RBP17.26■□□□□ 0.35
CLN3-212ENST00000564574 OR10K2Q6IF99 312 aa17.26■□□□□ 0.35
CLN3-212ENST00000564574 DCDC5Q6ZRR9 648 aa17.26■□□□□ 0.35
CLN3-212ENST00000564574 DEFB108BQ8NET1 73 aa17.26■□□□□ 0.35
CLN3-212ENST00000564574 ANGPTL6Q8NI99 470 aa17.26■□□□□ 0.35
CLN3-212ENST00000564574 FAM46BQ96A09 425 aa17.26■□□□□ 0.35
CLN3-212ENST00000564574 SEH1LQ96EE3 360 aa17.26■□□□□ 0.35
CLN3-212ENST00000564574 Q96M66 194 aa17.26■□□□□ 0.35
CLN3-212ENST00000564574 TMEM246Q9BRR3 403 aa17.26■□□□□ 0.35
CLN3-212ENST00000564574 TM2D1Q9BX74 207 aa17.26■□□□□ 0.35
CLN3-212ENST00000564574 SELENOIQ9C0D9 397 aa17.26■□□□□ 0.35
CLN3-212ENST00000564574 BPESC1Q9GZL8 116 aa17.26■□□□□ 0.35
CLN3-212ENST00000564574 KCNK15Q9H427 330 aa17.26■□□□□ 0.35
CLN3-212ENST00000564574 BANF2Q9H503 90 aa17.26■□□□□ 0.35
CLN3-212ENST00000564574 ZNF222Q9UK12 451 aa17.26■□□□□ 0.35
CLN3-212ENST00000564574 NKX6-3A6NJ46 265 aa17.25■□□□□ 0.35
CLN3-212ENST00000564574 SH2D1BO14796 132 aa17.25■□□□□ 0.35
CLN3-212ENST00000564574 TNFRSF13BO14836 293 aaPredicted RBP17.25■□□□□ 0.35
CLN3-212ENST00000564574 PAHP00439 452 aa17.25■□□□□ 0.35
CLN3-212ENST00000564574 NR4A2P43354 598 aa17.25■□□□□ 0.35
CLN3-212ENST00000564574 MPV17LQ2QL34 196 aa17.25■□□□□ 0.35
CLN3-212ENST00000564574 CMTM3Q96MX0 182 aa17.25■□□□□ 0.35
CLN3-212ENST00000564574 DCUN1D5Q9BTE7 237 aa17.25■□□□□ 0.35
CLN3-212ENST00000564574 IL36RNQ9UBH0 155 aa17.25■□□□□ 0.35
CLN3-212ENST00000564574 KAAG1Q9UBP8 84 aa17.25■□□□□ 0.35
CLN3-212ENST00000564574 OR14J1Q9UGF5 321 aa17.25■□□□□ 0.35
CLN3-212ENST00000564574 A0A075B6Q4 140 aa17.24■□□□□ 0.35
CLN3-212ENST00000564574 IGKV1D-17A0A075B6S4 117 aa17.24■□□□□ 0.35
CLN3-212ENST00000564574 IGHV4-30-2A0A087WSY4 118 aa17.24■□□□□ 0.35
CLN3-212ENST00000564574 RFPL4AA6NLU0 287 aa17.24■□□□□ 0.35
CLN3-212ENST00000564574 RFPL4AL1F8VTS6 287 aa17.24■□□□□ 0.35
CLN3-212ENST00000564574 HAND1O96004 215 aa17.24■□□□□ 0.35
CLN3-212ENST00000564574 GYPAP02724 150 aa17.24■□□□□ 0.35
CLN3-212ENST00000564574 CHRM2P08172 466 aa17.24■□□□□ 0.35
CLN3-212ENST00000564574 PRDX2P32119 198 aa17.24■□□□□ 0.35
CLN3-212ENST00000564574 ART1P52961 327 aa17.24■□□□□ 0.35
CLN3-212ENST00000564574 SNU13P55769 128 aaKnown RBP17.24■□□□□ 0.35
CLN3-212ENST00000564574 PIGYQ3MUY2 71 aa17.24■□□□□ 0.35
CLN3-212ENST00000564574 ZNF788Q6ZQV5 615 aa17.24■□□□□ 0.35
CLN3-212ENST00000564574 SLC36A1Q7Z2H8 476 aa17.24■□□□□ 0.35
CLN3-212ENST00000564574 SDSLQ96GA7 329 aa17.24■□□□□ 0.35
CLN3-212ENST00000564574 SLIRPQ9GZT3 109 aaKnown RBP17.24■□□□□ 0.35
CLN3-212ENST00000564574 LPAR5Q9H1C0 372 aa17.24■□□□□ 0.35
CLN3-212ENST00000564574 ZNF665Q9H7R5 613 aa17.24■□□□□ 0.35
CLN3-212ENST00000564574 IFT22Q9H7X7 185 aa17.24■□□□□ 0.35
CLN3-212ENST00000564574 MIOXQ9UGB7 285 aa17.24■□□□□ 0.35
CLN3-212ENST00000564574 TACC2O95359 2948 aa17.23■□□□□ 0.35
CLN3-212ENST00000564574 METTL21EPA6NDL7 271 aa17.23■□□□□ 0.35
CLN3-212ENST00000564574 GABRA2P47869 451 aa17.23■□□□□ 0.35
CLN3-212ENST00000564574 KRTAP1-3Q8IUG1 177 aa17.23■□□□□ 0.35
CLN3-212ENST00000564574 CHST4Q8NCG5 386 aa17.23■□□□□ 0.35
CLN3-212ENST00000564574 OR5T2Q8NGG2 359 aa17.23■□□□□ 0.35
CLN3-212ENST00000564574 OR5H6Q8NGV6 325 aa17.23■□□□□ 0.35
CLN3-212ENST00000564574 MED30Q96HR3 178 aa17.23■□□□□ 0.35
CLN3-212ENST00000564574 GAL3ST1Q99999 423 aa17.23■□□□□ 0.35
CLN3-212ENST00000564574 SPACA1Q9HBV2 294 aa17.23■□□□□ 0.35
CLN3-212ENST00000564574 A3GALT2U3KPV4 340 aa17.23■□□□□ 0.35
CLN3-212ENST00000564574 PRRC2AP48634 2157 aaKnown RBP17.23■□□□□ 0.35
CLN3-212ENST00000564574 CEACAM18A8MTB9 384 aa17.22■□□□□ 0.35
CLN3-212ENST00000564574 GEMIN2O14893 280 aaKnown RBP17.22■□□□□ 0.35
CLN3-212ENST00000564574 DEGS1O15121 323 aa17.22■□□□□ 0.35
CLN3-212ENST00000564574 SCGNO76038 276 aa17.22■□□□□ 0.35
CLN3-212ENST00000564574 LMO1P25800 156 aa17.22■□□□□ 0.35
CLN3-212ENST00000564574 IKZF1Q13422 519 aa17.22■□□□□ 0.35
CLN3-212ENST00000564574 TAF9Q16594 264 aa17.22■□□□□ 0.35
CLN3-212ENST00000564574 UBE2NLQ5JXB2 153 aa17.22■□□□□ 0.35
CLN3-212ENST00000564574 Q6P435 159 aa17.22■□□□□ 0.35
CLN3-212ENST00000564574 ZNF561Q8N587 486 aa17.22■□□□□ 0.35
CLN3-212ENST00000564574 FAM89BQ8N5H3 189 aa17.22■□□□□ 0.35
CLN3-212ENST00000564574 CD177Q8N6Q3 437 aa17.22■□□□□ 0.35
CLN3-212ENST00000564574 OR56B1Q8NGI3 324 aa17.22■□□□□ 0.35
CLN3-212ENST00000564574 GAFA1Q96PS6 74 aa17.22■□□□□ 0.35
CLN3-212ENST00000564574 NXF2Q9GZY0 626 aaKnown RBP17.22■□□□□ 0.35
CLN3-212ENST00000564574 PATZ1Q9HBE1 687 aaKnown RBP17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms