RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 SH2D1BO14796 132 aa11□□□□□ -0.65
CLK3-213ENST00000563842 SPRY1O43609 319 aaPredicted RBP11□□□□□ -0.65
CLK3-213ENST00000563842 KDM4BO94953 1096 aa11□□□□□ -0.65
CLK3-213ENST00000563842 HAND1O96004 215 aa11□□□□□ -0.65
CLK3-213ENST00000563842 TMEM225BP0DP42 221 aa11□□□□□ -0.65
CLK3-213ENST00000563842 PRKACAP17612 351 aa11□□□□□ -0.65
CLK3-213ENST00000563842 BCL3P20749 454 aa11□□□□□ -0.65
CLK3-213ENST00000563842 NPBWR2P48146 333 aa11□□□□□ -0.65
CLK3-213ENST00000563842 SOX2P48431 317 aa11□□□□□ -0.65
CLK3-213ENST00000563842 HSPA13P48723 471 aa11□□□□□ -0.65
CLK3-213ENST00000563842 AQP4P55087 323 aa11□□□□□ -0.65
CLK3-213ENST00000563842 WNT4P56705 351 aa11□□□□□ -0.65
CLK3-213ENST00000563842 PPP3R1P63098 170 aa11□□□□□ -0.65
CLK3-213ENST00000563842 YIF1BQ5BJH7 314 aa11□□□□□ -0.65
CLK3-213ENST00000563842 RUSC1-AS1Q66K80 236 aa11□□□□□ -0.65
CLK3-213ENST00000563842 DMKNQ6E0U4 476 aaPredicted RBP11□□□□□ -0.65
CLK3-213ENST00000563842 XAF1Q6GPH4 301 aa11□□□□□ -0.65
CLK3-213ENST00000563842 C12orf54Q6X4T0 127 aa11□□□□□ -0.65
CLK3-213ENST00000563842 OR8H2Q8N162 312 aa11□□□□□ -0.65
CLK3-213ENST00000563842 TMEM86BQ8N661 226 aa11□□□□□ -0.65
CLK3-213ENST00000563842 Q8N7P7 452 aa11□□□□□ -0.65
CLK3-213ENST00000563842 THRSPQ92748 146 aa11□□□□□ -0.65
CLK3-213ENST00000563842 MYDGFQ969H8 173 aa11□□□□□ -0.65
CLK3-213ENST00000563842 TMEM106AQ96A25 262 aa11□□□□□ -0.65
CLK3-213ENST00000563842 SPACA5Q96QH8 159 aa11□□□□□ -0.65
CLK3-213ENST00000563842 GPER1Q99527 375 aa11□□□□□ -0.65
CLK3-213ENST00000563842 HMG20AQ9NP66 347 aa11□□□□□ -0.65
CLK3-213ENST00000563842 RBFOX1Q9NWB1 397 aaKnown RBP11□□□□□ -0.65
CLK3-213ENST00000563842 FAM96BQ9Y3D0 163 aa11□□□□□ -0.65
CLK3-213ENST00000563842 ANGPTL7O43827 346 aa10.99□□□□□ -0.65
CLK3-213ENST00000563842 ZNF737O75373 536 aa10.99□□□□□ -0.65
CLK3-213ENST00000563842 ALDOBP05062 364 aa10.99□□□□□ -0.65
CLK3-213ENST00000563842 RNASE1P07998 156 aaKnown RBP10.99□□□□□ -0.65
CLK3-213ENST00000563842 UBE2E1P51965 193 aa10.99□□□□□ -0.65
CLK3-213ENST00000563842 MEF2CQ06413 473 aaPredicted RBP10.99□□□□□ -0.65
CLK3-213ENST00000563842 ACSM1Q08AH1 577 aa10.99□□□□□ -0.65
CLK3-213ENST00000563842 SLC9A3R2Q15599 337 aa10.99□□□□□ -0.65
CLK3-213ENST00000563842 C6orf141Q5SZD1 244 aa10.99□□□□□ -0.65
CLK3-213ENST00000563842 RNLSQ5VYX0 342 aa10.99□□□□□ -0.65
CLK3-213ENST00000563842 TMEM200BQ69YZ2 307 aa10.99□□□□□ -0.65
CLK3-213ENST00000563842 LAIR2Q6ISS4 152 aa10.99□□□□□ -0.65
CLK3-213ENST00000563842 ZNF529Q6P280 563 aa10.99□□□□□ -0.65
CLK3-213ENST00000563842 Q6YL49 198 aa10.99□□□□□ -0.65
CLK3-213ENST00000563842 ZNF485Q8NCK3 441 aa10.99□□□□□ -0.65
CLK3-213ENST00000563842 PXT1Q8NFP0 134 aa10.99□□□□□ -0.65
CLK3-213ENST00000563842 OR5D18Q8NGL1 313 aa10.99□□□□□ -0.65
CLK3-213ENST00000563842 NRG4Q8WWG1 115 aa10.99□□□□□ -0.65
CLK3-213ENST00000563842 GHSRQ92847 366 aa10.99□□□□□ -0.65
CLK3-213ENST00000563842 HEXA-AS1Q9H8Q6 139 aa10.99□□□□□ -0.65
CLK3-213ENST00000563842 EXOSC4Q9NPD3 245 aaKnown RBP10.99□□□□□ -0.65
CLK3-213ENST00000563842 TMEM138Q9NPI0 162 aa10.99□□□□□ -0.65
CLK3-213ENST00000563842 C19orf12Q9NSK7 152 aa10.99□□□□□ -0.65
CLK3-213ENST00000563842 FKBP14Q9NWM8 211 aa10.99□□□□□ -0.65
CLK3-213ENST00000563842 CKLFQ9UBR5 152 aa10.99□□□□□ -0.65
CLK3-213ENST00000563842 GSTK1Q9Y2Q3 226 aa10.99□□□□□ -0.65
CLK3-213ENST00000563842 SF3B6Q9Y3B4 125 aaKnown RBP10.99□□□□□ -0.65
CLK3-213ENST00000563842 TPRKBQ9Y3C4 175 aa10.99□□□□□ -0.65
CLK3-213ENST00000563842 POMT1Q9Y6A1 747 aa10.99□□□□□ -0.65
CLK3-213ENST00000563842 FUOMA2VDF0 154 aa10.98□□□□□ -0.65
CLK3-213ENST00000563842 PTGES3LE9PB15 166 aa10.98□□□□□ -0.65
CLK3-213ENST00000563842 RNASEK-C17orf49H0YIS7 233 aa10.98□□□□□ -0.65
CLK3-213ENST00000563842 LALBAP00709 142 aa10.98□□□□□ -0.65
CLK3-213ENST00000563842 CD1AP06126 327 aa10.98□□□□□ -0.65
CLK3-213ENST00000563842 CDK1P06493 297 aa10.98□□□□□ -0.65
CLK3-213ENST00000563842 FBP1P09467 338 aa10.98□□□□□ -0.65
CLK3-213ENST00000563842 GABRR1P24046 479 aa10.98□□□□□ -0.65
CLK3-213ENST00000563842 C21orf33P30042 268 aaPredicted RBP10.98□□□□□ -0.65
CLK3-213ENST00000563842 MTNR1BP49286 362 aa10.98□□□□□ -0.65
CLK3-213ENST00000563842 COMPP49747 757 aaPredicted RBP10.98□□□□□ -0.65
CLK3-213ENST00000563842 EDDM3BP56851 147 aa10.98□□□□□ -0.65
CLK3-213ENST00000563842 ERVFRD-1P60508 538 aa10.98□□□□□ -0.65
CLK3-213ENST00000563842 BDH1Q02338 343 aa10.98□□□□□ -0.65
CLK3-213ENST00000563842 FOXL1Q12952 345 aa10.98□□□□□ -0.65
CLK3-213ENST00000563842 Q499Y3 187 aa10.98□□□□□ -0.65
CLK3-213ENST00000563842 C16orf87Q6PH81 154 aa10.98□□□□□ -0.65
CLK3-213ENST00000563842 SATL1Q86VE3 508 aa10.98□□□□□ -0.65
CLK3-213ENST00000563842 PDZD9Q8IXQ8 264 aa10.98□□□□□ -0.65
CLK3-213ENST00000563842 NANOGP1Q8N7R0 232 aa10.98□□□□□ -0.65
CLK3-213ENST00000563842 CHST4Q8NCG5 386 aa10.98□□□□□ -0.65
CLK3-213ENST00000563842 OR4M1Q8NGD0 313 aa10.98□□□□□ -0.65
CLK3-213ENST00000563842 SSMEM1Q8WWF3 244 aa10.98□□□□□ -0.65
CLK3-213ENST00000563842 RGP1Q92546 391 aaPredicted RBP10.98□□□□□ -0.65
CLK3-213ENST00000563842 TNFRSF14Q92956 283 aa10.98□□□□□ -0.65
CLK3-213ENST00000563842 DUX5Q96PT3 197 aa10.98□□□□□ -0.65
CLK3-213ENST00000563842 S100A13Q99584 98 aa10.98□□□□□ -0.65
CLK3-213ENST00000563842 MND1Q9BWT6 205 aa10.98□□□□□ -0.65
CLK3-213ENST00000563842 TAS2R4Q9NYW5 299 aa10.98□□□□□ -0.65
CLK3-213ENST00000563842 SIRT4Q9Y6E7 314 aaPredicted RBP10.98□□□□□ -0.65
CLK3-213ENST00000563842 IGKV1-12A0A0C4DH73 117 aa10.97□□□□□ -0.65
CLK3-213ENST00000563842 TRBV5-5A0A0J9YX44 114 aa10.97□□□□□ -0.65
CLK3-213ENST00000563842 MDFIC2A0A1B0GVS7 189 aa10.97□□□□□ -0.65
CLK3-213ENST00000563842 hADV38S2A0JD32 116 aa10.97□□□□□ -0.65
CLK3-213ENST00000563842 MGST3O14880 152 aa10.97□□□□□ -0.65
CLK3-213ENST00000563842 NPFFO15130 113 aa10.97□□□□□ -0.65
CLK3-213ENST00000563842 HOXA3O43365 443 aaPredicted RBP10.97□□□□□ -0.65
CLK3-213ENST00000563842 PAHP00439 452 aa10.97□□□□□ -0.65
CLK3-213ENST00000563842 IGKV1D-12P01611 117 aa10.97□□□□□ -0.65
CLK3-213ENST00000563842 RBP4P02753 201 aa10.97□□□□□ -0.65
CLK3-213ENST00000563842 HKR1P10072 659 aa10.97□□□□□ -0.65
CLK3-213ENST00000563842 MYF6P23409 242 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms