RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 CD55P08174 381 aa4.2□□□□□ -1.74
VPS35P1-201ENST00000563400 C8orf88P0DMB2 117 aa4.2□□□□□ -1.74
VPS35P1-201ENST00000563400 CT45A6P0DMU7 189 aa4.2□□□□□ -1.74
VPS35P1-201ENST00000563400 CT45A5P0DMU8 189 aa4.2□□□□□ -1.74
VPS35P1-201ENST00000563400 CT45A7P0DMV0 189 aa4.2□□□□□ -1.74
VPS35P1-201ENST00000563400 SLC2A1P11166 492 aa4.2□□□□□ -1.74
VPS35P1-201ENST00000563400 ICAM2P13598 275 aa4.2□□□□□ -1.74
VPS35P1-201ENST00000563400 AK4P27144 223 aaPredicted RBP4.2□□□□□ -1.74
VPS35P1-201ENST00000563400 IDH3GP51553 393 aaPredicted RBP4.2□□□□□ -1.74
VPS35P1-201ENST00000563400 CRYBA2P53672 197 aa4.2□□□□□ -1.74
VPS35P1-201ENST00000563400 OR4D2P58180 307 aa4.2□□□□□ -1.74
VPS35P1-201ENST00000563400 PRDX1Q06830 199 aaKnown RBP4.2□□□□□ -1.74
VPS35P1-201ENST00000563400 SPIN4Q56A73 249 aa4.2□□□□□ -1.74
VPS35P1-201ENST00000563400 CT45A1Q5HYN5 189 aa4.2□□□□□ -1.74
VPS35P1-201ENST00000563400 TPTE2P1Q5T6R2 138 aa4.2□□□□□ -1.74
VPS35P1-201ENST00000563400 ANKRD22Q5VYY1 191 aa4.2□□□□□ -1.74
VPS35P1-201ENST00000563400 C17orf82Q86X59 251 aaPredicted RBP4.2□□□□□ -1.74
VPS35P1-201ENST00000563400 NATD1Q8N6N6 113 aa4.2□□□□□ -1.74
VPS35P1-201ENST00000563400 OR1M1Q8NGA1 313 aa4.2□□□□□ -1.74
VPS35P1-201ENST00000563400 CT45A3Q8NHU0 189 aa4.2□□□□□ -1.74
VPS35P1-201ENST00000563400 DYDC1Q8WWB3 177 aa4.2□□□□□ -1.74
VPS35P1-201ENST00000563400 ANKRD9Q96BM1 317 aaPredicted RBP4.2□□□□□ -1.74
VPS35P1-201ENST00000563400 C20orf144Q9BQM9 153 aa4.2□□□□□ -1.74
VPS35P1-201ENST00000563400 C12orf10Q9HB07 376 aa4.2□□□□□ -1.74
VPS35P1-201ENST00000563400 BTNL2Q9UIR0 455 aa4.2□□□□□ -1.74
VPS35P1-201ENST00000563400 CES1P1Q9UKY3 287 aa4.2□□□□□ -1.74
VPS35P1-201ENST00000563400 FARSAQ9Y285 508 aaKnown RBP4.2□□□□□ -1.74
VPS35P1-201ENST00000563400 ALG5Q9Y673 324 aa4.2□□□□□ -1.74
VPS35P1-201ENST00000563400 ABCA7Q8IZY2 2146 aa4.19□□□□□ -1.74
VPS35P1-201ENST00000563400 D6RAR5 112 aa4.19□□□□□ -1.74
VPS35P1-201ENST00000563400 G3V2L1 256 aa4.19□□□□□ -1.74
VPS35P1-201ENST00000563400 NUPL2O15504 423 aaKnown RBP4.19□□□□□ -1.74
VPS35P1-201ENST00000563400 OR1I1O60431 355 aa4.19□□□□□ -1.74
VPS35P1-201ENST00000563400 DPM1O60762 260 aa4.19□□□□□ -1.74
VPS35P1-201ENST00000563400 SUPT3HO75486 399 aa4.19□□□□□ -1.74
VPS35P1-201ENST00000563400 IFNA16P05015 189 aa4.19□□□□□ -1.74
VPS35P1-201ENST00000563400 ISG15P05161 165 aa4.19□□□□□ -1.74
VPS35P1-201ENST00000563400 CELP19835 753 aa4.19□□□□□ -1.74
VPS35P1-201ENST00000563400 PSMA1P25786 263 aaKnown RBP4.19□□□□□ -1.74
VPS35P1-201ENST00000563400 SHC1P29353 583 aa4.19□□□□□ -1.74
VPS35P1-201ENST00000563400 CCR7P32248 378 aa4.19□□□□□ -1.74
VPS35P1-201ENST00000563400 PMELP40967 661 aa4.19□□□□□ -1.74
VPS35P1-201ENST00000563400 CYB561P49447 251 aa4.19□□□□□ -1.74
VPS35P1-201ENST00000563400 SLC18A1P54219 525 aa4.19□□□□□ -1.74
VPS35P1-201ENST00000563400 APOC4P55056 127 aa4.19□□□□□ -1.74
VPS35P1-201ENST00000563400 TMEM33P57088 247 aa4.19□□□□□ -1.74
VPS35P1-201ENST00000563400 PROK1P58294 105 aa4.19□□□□□ -1.74
VPS35P1-201ENST00000563400 RAB8AP61006 207 aa4.19□□□□□ -1.74
VPS35P1-201ENST00000563400 SPCS3P61009 180 aa4.19□□□□□ -1.74
VPS35P1-201ENST00000563400 MRPS11P82912 194 aaKnown RBP4.19□□□□□ -1.74
VPS35P1-201ENST00000563400 PUDPQ08623 228 aa4.19□□□□□ -1.74
VPS35P1-201ENST00000563400 GAGE5Q13069 117 aa4.19□□□□□ -1.74
VPS35P1-201ENST00000563400 GAGE6Q13070 117 aa4.19□□□□□ -1.74
VPS35P1-201ENST00000563400 SKP2Q13309 424 aa4.19□□□□□ -1.74
VPS35P1-201ENST00000563400 AQP6Q13520 282 aa4.19□□□□□ -1.74
VPS35P1-201ENST00000563400 FASTKQ14296 549 aaKnown RBP4.19□□□□□ -1.74
VPS35P1-201ENST00000563400 RBMS2Q15434 407 aaKnown RBP4.19□□□□□ -1.74
VPS35P1-201ENST00000563400 TMEM176BQ3YBM2 270 aaPredicted RBP4.19□□□□□ -1.74
VPS35P1-201ENST00000563400 CHCHD2P9Q5T1J5 151 aaPredicted RBP4.19□□□□□ -1.74
VPS35P1-201ENST00000563400 HES3Q5TGS1 186 aa4.19□□□□□ -1.74
VPS35P1-201ENST00000563400 METTL21CQ5VZV1 264 aa4.19□□□□□ -1.74
VPS35P1-201ENST00000563400 HBMQ6B0K9 141 aa4.19□□□□□ -1.74
VPS35P1-201ENST00000563400 AGTRAPQ6RW13 159 aa4.19□□□□□ -1.74
VPS35P1-201ENST00000563400 CHMP1BQ7LBR1 199 aa4.19□□□□□ -1.74
VPS35P1-201ENST00000563400 LYG2Q86SG7 212 aa4.19□□□□□ -1.74
VPS35P1-201ENST00000563400 PXT1Q8NFP0 134 aa4.19□□□□□ -1.74
VPS35P1-201ENST00000563400 OR8G5Q8NG78 346 aa4.19□□□□□ -1.74
VPS35P1-201ENST00000563400 DOK4Q8TEW6 326 aa4.19□□□□□ -1.74
VPS35P1-201ENST00000563400 PYDC1Q8WXC3 89 aa4.19□□□□□ -1.74
VPS35P1-201ENST00000563400 TMEM234Q8WY98 164 aa4.19□□□□□ -1.74
VPS35P1-201ENST00000563400 RAB8BQ92930 207 aa4.19□□□□□ -1.74
VPS35P1-201ENST00000563400 BIRC8Q96P09 236 aa4.19□□□□□ -1.74
VPS35P1-201ENST00000563400 ZNF385AQ96PM9 386 aaKnown RBP4.19□□□□□ -1.74
VPS35P1-201ENST00000563400 HBEGFQ99075 208 aa4.19□□□□□ -1.74
VPS35P1-201ENST00000563400 P2RX4Q99571 388 aa4.19□□□□□ -1.74
VPS35P1-201ENST00000563400 RASL11BQ9BPW5 248 aa4.19□□□□□ -1.74
VPS35P1-201ENST00000563400 NMUR2Q9GZQ4 415 aa4.19□□□□□ -1.74
VPS35P1-201ENST00000563400 FAM107BQ9H098 131 aa4.19□□□□□ -1.74
VPS35P1-201ENST00000563400 WDR13Q9H1Z4 485 aa4.19□□□□□ -1.74
VPS35P1-201ENST00000563400 DIABLOQ9NR28 239 aa4.19□□□□□ -1.74
VPS35P1-201ENST00000563400 CTNNBIP1Q9NSA3 81 aaPredicted RBP4.19□□□□□ -1.74
VPS35P1-201ENST00000563400 BDP1A6H8Y1 2624 aa4.19□□□□□ -1.74
VPS35P1-201ENST00000563400 NYNRINQ9P2P1 1898 aaKnown RBP4.18□□□□□ -1.74
VPS35P1-201ENST00000563400 PI4KAP42356 2102 aa4.18□□□□□ -1.74
VPS35P1-201ENST00000563400 ANKRD36A6QL64 1941 aa4.18□□□□□ -1.74
VPS35P1-201ENST00000563400 TRIM49D1C9J1S8 452 aa4.18□□□□□ -1.74
VPS35P1-201ENST00000563400 NTN3O00634 580 aaPredicted RBP4.18□□□□□ -1.74
VPS35P1-201ENST00000563400 EIF3GO75821 320 aaKnown RBP eCLIP4.18□□□□□ -1.74
VPS35P1-201ENST00000563400 OR2B3O76000 313 aa4.18□□□□□ -1.74
VPS35P1-201ENST00000563400 BCHEP06276 602 aa4.18□□□□□ -1.74
VPS35P1-201ENST00000563400 MELTFP08582 738 aa4.18□□□□□ -1.74
VPS35P1-201ENST00000563400 NELFEP18615 380 aaKnown RBP4.18□□□□□ -1.74
VPS35P1-201ENST00000563400 USF1P22415 310 aaPredicted RBP4.18□□□□□ -1.74
VPS35P1-201ENST00000563400 NTSP30990 170 aa4.18□□□□□ -1.74
VPS35P1-201ENST00000563400 GPX4P36969 197 aaPredicted RBP4.18□□□□□ -1.74
VPS35P1-201ENST00000563400 FABP6P51161 128 aa4.18□□□□□ -1.74
VPS35P1-201ENST00000563400 RORCP51449 518 aa4.18□□□□□ -1.74
VPS35P1-201ENST00000563400 PSPHP78330 225 aa4.18□□□□□ -1.74
VPS35P1-201ENST00000563400 FAM53BQ14153 422 aa4.18□□□□□ -1.74
VPS35P1-201ENST00000563400 C4orf26Q17RF5 130 aa4.18□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms