RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 SERPINE2P07093 398 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 HRH1P35367 487 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 GPR6P46095 362 aaPredicted RBP4.68□□□□□ -1.66
VPS13C-209ENST00000560637 OR3A1P47881 315 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 REG1BP48304 166 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 CCR9P51686 369 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 KHDC1LQ5JSQ8 128 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 STEAP3Q658P3 488 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 RTL6Q6ICC9 239 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 RNF144BQ7Z419 303 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 CALHM1Q8IU99 346 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 RNASE6Q93091 150 aaKnown RBP4.68□□□□□ -1.66
VPS13C-209ENST00000560637 RGCCQ9H4X1 137 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 G6PC2Q9NQR9 355 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 CACNG2Q9Y698 323 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 CFAP46Q8IYW2 2715 aa4.68□□□□□ -1.66
VPS13C-209ENST00000560637 TOR1AO14656 332 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 WNT5AP41221 380 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 NKX2-5P52952 324 aaPredicted RBP4.67□□□□□ -1.66
VPS13C-209ENST00000560637 RPS16P62249 146 aaKnown RBP4.67□□□□□ -1.66
VPS13C-209ENST00000560637 PLA2G7Q13093 441 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 FHL1Q13642 323 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 BAK1Q16611 211 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 TM4SF20Q53R12 229 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 STEAP1BQ6NZ63 245 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 RHOUQ7L0Q8 258 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 ST6GALNAC3Q8NDV1 305 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 RAB40AQ8WXH6 277 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 RGP1Q92546 391 aaPredicted RBP4.67□□□□□ -1.66
VPS13C-209ENST00000560637 SPSB1Q96BD6 273 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 RRNAD1Q96FB5 475 aaKnown RBP4.67□□□□□ -1.66
VPS13C-209ENST00000560637 PGLYRP3Q96LB9 341 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 CXXC4Q9H2H0 198 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 PIGMQ9H3S5 423 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 SIRT7Q9NRC8 400 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 TBCCD1Q9NVR7 557 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 FOXD3Q9UJU5 478 aaPredicted RBP4.67□□□□□ -1.66
VPS13C-209ENST00000560637 USP24Q9UPU5 2620 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 LGALS8O00214 317 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 SPINT2O43291 252 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 TNFSF13O75888 250 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 H2AFB2P0C5Z0 115 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 VSIG8P0DPA2 414 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 SELLP14151 372 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 ADRA2CP18825 462 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 FCGR2CP31995 323 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 TIMP3P35625 211 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 P2RY4P51582 365 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 MECP2P51608 486 aaKnown RBP4.67□□□□□ -1.66
VPS13C-209ENST00000560637 BDH1Q02338 343 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 HGFACQ04756 655 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 SMCO1Q147U7 214 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 SP6Q3SY56 376 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 MOGAT2Q3SYC2 334 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 KRBOX4Q5JUW0 171 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 AGAP6Q5VW22 663 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 SLC36A1Q7Z2H8 476 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 GABRG1Q8N1C3 465 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 RELL2Q8NC24 303 aaPredicted RBP4.67□□□□□ -1.66
VPS13C-209ENST00000560637 TMEM45BQ96B21 275 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 POM121L2Q96KW2 1035 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 ZNF2Q9BSG1 426 aaPredicted RBP4.67□□□□□ -1.66
VPS13C-209ENST00000560637 CHST5Q9GZS9 411 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 POFUT1Q9H488 388 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 ZNF355PQ9NSJ1 428 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 KCNIP3Q9Y2W7 256 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 MRPS18CQ9Y3D5 142 aaKnown RBP4.67□□□□□ -1.66
VPS13C-209ENST00000560637 FN1P02751 2386 aaKnown RBP4.67□□□□□ -1.66
VPS13C-209ENST00000560637 A0A1B0GV50 99 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 SMCO3A2RU48 225 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 MBD3L4A6NDZ8 208 aaPredicted RBP4.67□□□□□ -1.66
VPS13C-209ENST00000560637 MBD3L3A6NE82 208 aaPredicted RBP4.67□□□□□ -1.66
VPS13C-209ENST00000560637 DPRXA6NFQ7 191 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 MBD3L5A6NJ08 208 aaPredicted RBP4.67□□□□□ -1.66
VPS13C-209ENST00000560637 CCSO14618 274 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 NDUFS7O75251 213 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 SIX6O95475 246 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 IFNA21P01568 189 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 OPN1MWP04001 364 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 AKAIN1P0CW23 69 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 APELAP0DMC3 54 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 OPN1MW2P0DN77 364 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 OPN1MW3P0DN78 364 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 PRF1P14222 555 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 PSMB1P20618 241 aaKnown RBP4.67□□□□□ -1.66
VPS13C-209ENST00000560637 ROM1Q03395 351 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 ZNF154Q13106 437 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 PDZK1IP1Q13113 114 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 IRF3Q14653 427 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 OR10R2Q8NGX6 335 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 OR10X1Q8NGY0 326 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 OR14K1Q8NGZ2 314 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 MBD3L2Q8NHZ7 208 aaPredicted RBP4.67□□□□□ -1.66
VPS13C-209ENST00000560637 CHAC2Q8WUX2 184 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 RAB1CQ92928 201 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 NABP1Q96AH0 204 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 ABHD1Q96SE0 405 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 USB1Q9BQ65 265 aaKnown RBP4.67□□□□□ -1.66
VPS13C-209ENST00000560637 DCTN5Q9BTE1 182 aa4.67□□□□□ -1.66
VPS13C-209ENST00000560637 C11orf54Q9H0W9 315 aaPredicted RBP4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms