RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 HAND1O96004 215 aa7.35□□□□□ -1.23
HDDC3-204ENST00000559834 KRT8P05787 483 aa7.35□□□□□ -1.23
HDDC3-204ENST00000559834 CCL1P22362 96 aa7.35□□□□□ -1.23
HDDC3-204ENST00000559834 GABRR1P24046 479 aa7.35□□□□□ -1.23
HDDC3-204ENST00000559834 ERP29P30040 261 aaKnown RBP7.35□□□□□ -1.23
HDDC3-204ENST00000559834 ATP1B3P54709 279 aa7.35□□□□□ -1.23
HDDC3-204ENST00000559834 PTGES3Q15185 160 aaKnown RBP7.35□□□□□ -1.23
HDDC3-204ENST00000559834 UBE2V2Q15819 145 aa7.35□□□□□ -1.23
HDDC3-204ENST00000559834 GRK1Q15835 563 aa7.35□□□□□ -1.23
HDDC3-204ENST00000559834 ZSCAN26Q16670 478 aa7.35□□□□□ -1.23
HDDC3-204ENST00000559834 NXNL2Q5VZ03 156 aa7.35□□□□□ -1.23
HDDC3-204ENST00000559834 SLC25A26Q70HW3 274 aa7.35□□□□□ -1.23
HDDC3-204ENST00000559834 TRAPPC6BQ86SZ2 158 aa7.35□□□□□ -1.23
HDDC3-204ENST00000559834 ABHD12Q8N2K0 398 aa7.35□□□□□ -1.23
HDDC3-204ENST00000559834 YIPF7Q8N8F6 280 aa7.35□□□□□ -1.23
HDDC3-204ENST00000559834 EMG1Q92979 244 aaKnown RBP7.35□□□□□ -1.23
HDDC3-204ENST00000559834 SLAMF9Q96A28 289 aa7.35□□□□□ -1.23
HDDC3-204ENST00000559834 C10orf35Q96D05 121 aa7.35□□□□□ -1.23
HDDC3-204ENST00000559834 BORCS8Q96FH0 119 aa7.35□□□□□ -1.23
HDDC3-204ENST00000559834 CADM1Q9BY67 442 aaKnown RBP7.35□□□□□ -1.23
HDDC3-204ENST00000559834 GPR61Q9BZJ8 451 aa7.35□□□□□ -1.23
HDDC3-204ENST00000559834 GAL3ST2Q9H3Q3 398 aa7.35□□□□□ -1.23
HDDC3-204ENST00000559834 LIN7BQ9HAP6 207 aa7.35□□□□□ -1.23
HDDC3-204ENST00000559834 UBE2J1Q9Y385 318 aaPredicted RBP7.35□□□□□ -1.23
HDDC3-204ENST00000559834 LEUTXA8MZ59 168 aa7.34□□□□□ -1.23
HDDC3-204ENST00000559834 F8VVB4 439 aa7.34□□□□□ -1.23
HDDC3-204ENST00000559834 F8VWA3 439 aa7.34□□□□□ -1.23
HDDC3-204ENST00000559834 M0QZK8 103 aa7.34□□□□□ -1.23
HDDC3-204ENST00000559834 TOR1AO14656 332 aa7.34□□□□□ -1.23
HDDC3-204ENST00000559834 SH2D1BO14796 132 aa7.34□□□□□ -1.23
HDDC3-204ENST00000559834 MAGEB4O15481 346 aaPredicted RBP7.34□□□□□ -1.23
HDDC3-204ENST00000559834 FKBP6O75344 327 aa7.34□□□□□ -1.23
HDDC3-204ENST00000559834 INMTO95050 263 aa7.34□□□□□ -1.23
HDDC3-204ENST00000559834 LPLP06858 475 aa7.34□□□□□ -1.23
HDDC3-204ENST00000559834 OR2T7P0C7T2 308 aa7.34□□□□□ -1.23
HDDC3-204ENST00000559834 CEACAM3P40198 252 aa7.34□□□□□ -1.23
HDDC3-204ENST00000559834 PRRX1P54821 245 aa7.34□□□□□ -1.23
HDDC3-204ENST00000559834 CDC42P60953 191 aa7.34□□□□□ -1.23
HDDC3-204ENST00000559834 BDH1Q02338 343 aa7.34□□□□□ -1.23
HDDC3-204ENST00000559834 ODF4Q2M2E3 257 aa7.34□□□□□ -1.23
HDDC3-204ENST00000559834 TMEM95Q3KNT9 176 aa7.34□□□□□ -1.23
HDDC3-204ENST00000559834 AADACL4Q5VUY2 407 aa7.34□□□□□ -1.23
HDDC3-204ENST00000559834 CCDC121Q6ZUS5 278 aa7.34□□□□□ -1.23
HDDC3-204ENST00000559834 SPATA24Q86W54 205 aa7.34□□□□□ -1.23
HDDC3-204ENST00000559834 FAM58AQ8N1B3 248 aa7.34□□□□□ -1.23
HDDC3-204ENST00000559834 TCEANCQ8N8B7 351 aa7.34□□□□□ -1.23
HDDC3-204ENST00000559834 DNAAF1Q8NEP3 725 aa7.34□□□□□ -1.23
HDDC3-204ENST00000559834 OR52N4Q8NGI2 321 aa7.34□□□□□ -1.23
HDDC3-204ENST00000559834 DPF1Q92782 380 aa7.34□□□□□ -1.23
HDDC3-204ENST00000559834 MYDGFQ969H8 173 aa7.34□□□□□ -1.23
HDDC3-204ENST00000559834 ADGRL4Q9HBW9 690 aa7.34□□□□□ -1.23
HDDC3-204ENST00000559834 MRM2Q9UI43 246 aaKnown RBP7.34□□□□□ -1.23
HDDC3-204ENST00000559834 PCDHGB5Q9Y5G0 923 aa7.34□□□□□ -1.23
HDDC3-204ENST00000559834 IGKV1-27A0A075B6S5 117 aa7.33□□□□□ -1.24
HDDC3-204ENST00000559834 TRGV10A0A0A0MS01 117 aa7.33□□□□□ -1.24
HDDC3-204ENST00000559834 TRBV2A0A0J9YWF9 115 aa7.33□□□□□ -1.24
HDDC3-204ENST00000559834 METTL15A6NJ78 407 aa7.33□□□□□ -1.24
HDDC3-204ENST00000559834 E9PQ18 207 aa7.33□□□□□ -1.24
HDDC3-204ENST00000559834 K7EIL1 84 aa7.33□□□□□ -1.24
HDDC3-204ENST00000559834 PSPNO60542 156 aa7.33□□□□□ -1.24
HDDC3-204ENST00000559834 SULT1C4O75897 302 aa7.33□□□□□ -1.24
HDDC3-204ENST00000559834 OR2F2O95006 317 aa7.33□□□□□ -1.24
HDDC3-204ENST00000559834 IGHA1P01876 353 aa7.33□□□□□ -1.24
HDDC3-204ENST00000559834 FAM106CPP0CH98 169 aa7.33□□□□□ -1.24
HDDC3-204ENST00000559834 T-ENOLP0DO92 83 aa7.33□□□□□ -1.24
HDDC3-204ENST00000559834 JUNBP17275 347 aaPredicted RBP7.33□□□□□ -1.24
HDDC3-204ENST00000559834 PRKACBP22694 351 aa7.33□□□□□ -1.24
HDDC3-204ENST00000559834 ATP6V1E1P36543 226 aa7.33□□□□□ -1.24
HDDC3-204ENST00000559834 MNDAP41218 407 aa7.33□□□□□ -1.24
HDDC3-204ENST00000559834 RBP2P50120 134 aa7.33□□□□□ -1.24
HDDC3-204ENST00000559834 DAPP51397 102 aa7.33□□□□□ -1.24
HDDC3-204ENST00000559834 MTCP1P56278 107 aa7.33□□□□□ -1.24
HDDC3-204ENST00000559834 EFNB1P98172 346 aa7.33□□□□□ -1.24
HDDC3-204ENST00000559834 ZNF91Q05481 1191 aa7.33□□□□□ -1.24
HDDC3-204ENST00000559834 DCTN2Q13561 401 aaKnown RBP7.33□□□□□ -1.24
HDDC3-204ENST00000559834 FLOT2Q14254 428 aa7.33□□□□□ -1.24
HDDC3-204ENST00000559834 KPNB1Q14974 876 aaKnown RBP7.33□□□□□ -1.24
HDDC3-204ENST00000559834 ZNF146Q15072 292 aa7.33□□□□□ -1.24
HDDC3-204ENST00000559834 ABCA11PQ4W5N1 156 aa7.33□□□□□ -1.24
HDDC3-204ENST00000559834 KHDC1LQ5JSQ8 128 aa7.33□□□□□ -1.24
HDDC3-204ENST00000559834 SPIN3Q5JUX0 258 aa7.33□□□□□ -1.24
HDDC3-204ENST00000559834 CCDC144NLQ6NUI1 221 aa7.33□□□□□ -1.24
HDDC3-204ENST00000559834 FAHD1Q6P587 224 aa7.33□□□□□ -1.24
HDDC3-204ENST00000559834 HEPN1Q6WQI6 88 aa7.33□□□□□ -1.24
HDDC3-204ENST00000559834 PLEKHG7Q6ZR37 379 aa7.33□□□□□ -1.24
HDDC3-204ENST00000559834 TCF23Q7RTU1 214 aa7.33□□□□□ -1.24
HDDC3-204ENST00000559834 BCDIN3DQ7Z5W3 292 aaKnown RBP7.33□□□□□ -1.24
HDDC3-204ENST00000559834 CATSPERDQ86XM0 798 aa7.33□□□□□ -1.24
HDDC3-204ENST00000559834 GID4Q8IVV7 300 aa7.33□□□□□ -1.24
HDDC3-204ENST00000559834 TPRX1Q8N7U7 411 aa7.33□□□□□ -1.24
HDDC3-204ENST00000559834 CCDC197Q8NCU1 140 aa7.33□□□□□ -1.24
HDDC3-204ENST00000559834 OR51D1Q8NGF3 324 aa7.33□□□□□ -1.24
HDDC3-204ENST00000559834 OR4P4Q8NGL7 312 aa7.33□□□□□ -1.24
HDDC3-204ENST00000559834 TMEM163Q8TC26 289 aa7.33□□□□□ -1.24
HDDC3-204ENST00000559834 PP6455Q8WZ26 134 aa7.33□□□□□ -1.24
HDDC3-204ENST00000559834 CORO2AQ92828 525 aa7.33□□□□□ -1.24
HDDC3-204ENST00000559834 RBM14Q96PK6 669 aaKnown RBP7.33□□□□□ -1.24
HDDC3-204ENST00000559834 SLC25A33Q9BSK2 321 aa7.33□□□□□ -1.24
HDDC3-204ENST00000559834 MCRIP2Q9BUT9 160 aaKnown RBP7.33□□□□□ -1.24
HDDC3-204ENST00000559834 CHST5Q9GZS9 411 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms