RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 FAM3AP98173 230 aa9.91□□□□□ -0.82
LDLR-208ENST00000558518 DLX2Q07687 328 aaPredicted RBP9.91□□□□□ -0.82
LDLR-208ENST00000558518 OR51H1Q8NH63 302 aa9.91□□□□□ -0.82
LDLR-208ENST00000558518 OR14L1PQ8NHC6 308 aa9.91□□□□□ -0.82
LDLR-208ENST00000558518 OR51B6Q9H340 312 aa9.91□□□□□ -0.82
LDLR-208ENST00000558518 PLEKHA2Q9HB19 425 aa9.91□□□□□ -0.82
LDLR-208ENST00000558518 TSPAN2O60636 221 aa9.9□□□□□ -0.82
LDLR-208ENST00000558518 IGHV2-5P01817 119 aa9.9□□□□□ -0.82
LDLR-208ENST00000558518 NKX2-1P43699 371 aaPredicted RBP9.9□□□□□ -0.82
LDLR-208ENST00000558518 HTR5AP47898 357 aa9.9□□□□□ -0.82
LDLR-208ENST00000558518 EWSR1Q01844 656 aaKnown RBP eCLIP9.9□□□□□ -0.826e-6■■■■□ 22.1
LDLR-208ENST00000558518 TMEM267Q0VDI3 215 aaPredicted RBP9.9□□□□□ -0.82
LDLR-208ENST00000558518 SMAD4Q13485 552 aaKnown RBP9.9□□□□□ -0.82
LDLR-208ENST00000558518 ADIRFQ15847 76 aa9.9□□□□□ -0.82
LDLR-208ENST00000558518 DOK3Q7L591 496 aa9.9□□□□□ -0.82
LDLR-208ENST00000558518 LURAP1Q96LR2 239 aa9.9□□□□□ -0.82
LDLR-208ENST00000558518 NKX2-4Q9H2Z4 354 aa9.9□□□□□ -0.82
LDLR-208ENST00000558518 CD207Q9UJ71 328 aa9.9□□□□□ -0.82
LDLR-208ENST00000558518 STARD10Q9Y365 291 aa9.9□□□□□ -0.82
LDLR-208ENST00000558518 R4GN57 208 aa9.9□□□□□ -0.82
LDLR-208ENST00000558518 TERTO14746 1132 aaKnown RBP9.9□□□□□ -0.82
LDLR-208ENST00000558518 GPR137BO60478 399 aa9.9□□□□□ -0.82
LDLR-208ENST00000558518 HIST1H2BKO60814 126 aa9.9□□□□□ -0.82
LDLR-208ENST00000558518 HIST1H2BJP06899 126 aa9.9□□□□□ -0.82
LDLR-208ENST00000558518 TRGC1P0CF51 173 aa9.9□□□□□ -0.82
LDLR-208ENST00000558518 FOLR2P14207 255 aa9.9□□□□□ -0.82
LDLR-208ENST00000558518 HIST1H2BOP23527 126 aa9.9□□□□□ -0.82
LDLR-208ENST00000558518 HIST1H2BBP33778 126 aa9.9□□□□□ -0.82
LDLR-208ENST00000558518 CDX1P47902 265 aaPredicted RBP9.9□□□□□ -0.82
LDLR-208ENST00000558518 HIST1H2BDP58876 126 aa9.9□□□□□ -0.82
LDLR-208ENST00000558518 YPEL5P62699 121 aa9.9□□□□□ -0.82
LDLR-208ENST00000558518 HIST1H2BCP62807 126 aa9.9□□□□□ -0.82
LDLR-208ENST00000558518 HIST2H2BEQ16778 126 aa9.9□□□□□ -0.82
LDLR-208ENST00000558518 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.9□□□□□ -0.82
LDLR-208ENST00000558518 RAET1LQ5VY80 246 aa9.9□□□□□ -0.82
LDLR-208ENST00000558518 DTX1Q86Y01 620 aa9.9□□□□□ -0.82
LDLR-208ENST00000558518 SLC39A7Q92504 469 aa9.9□□□□□ -0.82
LDLR-208ENST00000558518 HIST1H2BHQ93079 126 aa9.9□□□□□ -0.82
LDLR-208ENST00000558518 CPNE4Q96A23 557 aaPredicted RBP9.9□□□□□ -0.82
LDLR-208ENST00000558518 NTNG2Q96CW9 530 aa9.9□□□□□ -0.82
LDLR-208ENST00000558518 BORCS8Q96FH0 119 aa9.9□□□□□ -0.82
LDLR-208ENST00000558518 ZDHHC12Q96GR4 267 aa9.9□□□□□ -0.82
LDLR-208ENST00000558518 HIST1H2BNQ99877 126 aa9.9□□□□□ -0.82
LDLR-208ENST00000558518 HIST1H2BMQ99879 126 aa9.9□□□□□ -0.82
LDLR-208ENST00000558518 AURKAIP1Q9NWT8 199 aaPredicted RBP9.9□□□□□ -0.82
LDLR-208ENST00000558518 DMRT1Q9Y5R6 373 aa9.9□□□□□ -0.82
LDLR-208ENST00000558518 FER1L5A0AVI2 2057 aa9.9□□□□□ -0.82
LDLR-208ENST00000558518 IFITM10A6NMD0 228 aa9.9□□□□□ -0.83
LDLR-208ENST00000558518 HSPA12AO43301 675 aa9.9□□□□□ -0.83
LDLR-208ENST00000558518 P2RY1P47900 373 aa9.9□□□□□ -0.83
LDLR-208ENST00000558518 DYNLT3P51808 116 aa9.9□□□□□ -0.83
LDLR-208ENST00000558518 BATFQ16520 125 aa9.9□□□□□ -0.83
LDLR-208ENST00000558518 ZNF385CQ66K41 422 aaPredicted RBP9.9□□□□□ -0.83
LDLR-208ENST00000558518 GPR137CQ8N3F9 429 aa9.9□□□□□ -0.83
LDLR-208ENST00000558518 ARHGEF39Q8N4T4 335 aa9.9□□□□□ -0.83
LDLR-208ENST00000558518 OR1N1Q8NGS0 311 aa9.9□□□□□ -0.83
LDLR-208ENST00000558518 IL1F10Q8WWZ1 152 aa9.9□□□□□ -0.83
LDLR-208ENST00000558518 C1orf147Q96MC9 270 aaPredicted RBP9.9□□□□□ -0.83
LDLR-208ENST00000558518 NAA60Q9H7X0 242 aa9.9□□□□□ -0.83
LDLR-208ENST00000558518 WASF3Q9UPY6 502 aa9.9□□□□□ -0.83
LDLR-208ENST00000558518 DOCK10Q96BY6 2186 aa9.9□□□□□ -0.83
LDLR-208ENST00000558518 FAM157AC9JC47 383 aa9.89□□□□□ -0.83
LDLR-208ENST00000558518 ADAM20O43506 726 aa9.89□□□□□ -0.83
LDLR-208ENST00000558518 IGKV3-11P04433 115 aa9.89□□□□□ -0.83
LDLR-208ENST00000558518 IGHV4-34P06331 123 aa9.89□□□□□ -0.83
LDLR-208ENST00000558518 TNFRSF4P43489 277 aa9.89□□□□□ -0.83
LDLR-208ENST00000558518 IDH3GP51553 393 aaPredicted RBP9.89□□□□□ -0.83
LDLR-208ENST00000558518 IGLV3-21P80748 117 aaPredicted RBP9.89□□□□□ -0.83
LDLR-208ENST00000558518 C17orf67Q0P5P2 114 aa9.89□□□□□ -0.83
LDLR-208ENST00000558518 C9orf50Q5SZB4 431 aa9.89□□□□□ -0.83
LDLR-208ENST00000558518 OR2C3Q8N628 320 aa9.89□□□□□ -0.83
LDLR-208ENST00000558518 FRZBQ92765 325 aa9.89□□□□□ -0.83
LDLR-208ENST00000558518 PACRGQ96M98 296 aaPredicted RBP9.89□□□□□ -0.83
LDLR-208ENST00000558518 FGF21Q9NSA1 209 aa9.89□□□□□ -0.83
LDLR-208ENST00000558518 NECAP2Q9NVZ3 263 aa9.89□□□□□ -0.83
LDLR-208ENST00000558518 TREM2Q9NZC2 230 aa9.89□□□□□ -0.83
LDLR-208ENST00000558518 THADAQ6YHU6 1953 aa9.89□□□□□ -0.83
LDLR-208ENST00000558518 A0A0U1RQK1 487 aa9.89□□□□□ -0.83
LDLR-208ENST00000558518 CEBPZOSA8MTT3 80 aa9.89□□□□□ -0.83
LDLR-208ENST00000558518 FTCDNL1E5RQL4 147 aa9.89□□□□□ -0.83
LDLR-208ENST00000558518 GATCO43716 136 aaKnown RBP9.89□□□□□ -0.83
LDLR-208ENST00000558518 NPIPB7O75200 414 aa9.89□□□□□ -0.83
LDLR-208ENST00000558518 IAPPP10997 89 aa9.89□□□□□ -0.83
LDLR-208ENST00000558518 ZNF17P17021 662 aa9.89□□□□□ -0.83
LDLR-208ENST00000558518 HOXA5P20719 270 aa9.89□□□□□ -0.83
LDLR-208ENST00000558518 C14orf144Q96I85 54 aa9.89□□□□□ -0.83
LDLR-208ENST00000558518 FAM210BQ96KR6 192 aa9.89□□□□□ -0.83
LDLR-208ENST00000558518 TP53RKQ96S44 253 aa9.89□□□□□ -0.83
LDLR-208ENST00000558518 PLA2G3Q9NZ20 509 aa9.89□□□□□ -0.83
LDLR-208ENST00000558518 LIPT2A6NK58 231 aa9.89□□□□□ -0.83
LDLR-208ENST00000558518 M0R135 149 aa9.89□□□□□ -0.83
LDLR-208ENST00000558518 EFNA2O43921 213 aa9.89□□□□□ -0.83
LDLR-208ENST00000558518 THBS4P35443 961 aa9.89□□□□□ -0.83
LDLR-208ENST00000558518 CSNK1A1P48729 337 aa9.89□□□□□ -0.83
LDLR-208ENST00000558518 ERVS71-1P61550 626 aa9.89□□□□□ -0.83
LDLR-208ENST00000558518 SNAI3Q3KNW1 292 aa9.89□□□□□ -0.83
LDLR-208ENST00000558518 DEGS2Q6QHC5 323 aa9.89□□□□□ -0.83
LDLR-208ENST00000558518 HEPN1Q6WQI6 88 aa9.89□□□□□ -0.83
LDLR-208ENST00000558518 NOXO1Q8NFA2 376 aa9.89□□□□□ -0.83
LDLR-208ENST00000558518 RPUSD4Q96CM3 377 aaKnown RBP9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms