RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-223ENST00000557005 CRYAAP02489 173 aa4.39□□□□□ -1.71
SYNE2-223ENST00000557005 MBPP02686 304 aaPredicted RBP4.39□□□□□ -1.71
SYNE2-223ENST00000557005 GYPAP02724 150 aa4.39□□□□□ -1.71
SYNE2-223ENST00000557005 PATE4P0C8F1 98 aa4.39□□□□□ -1.71
SYNE2-223ENST00000557005 B2MP61769 119 aa4.39□□□□□ -1.71
SYNE2-223ENST00000557005 CPT1CQ8TCG5 803 aa4.39□□□□□ -1.71
SYNE2-223ENST00000557005 HLA-CQ95604 372 aa4.39□□□□□ -1.71
SYNE2-223ENST00000557005 MRGPRX4Q96LA9 322 aa4.39□□□□□ -1.71
SYNE2-223ENST00000557005 TPPP3Q9BW30 176 aa4.39□□□□□ -1.71
SYNE2-223ENST00000557005 G6PC2Q9NQR9 355 aa4.39□□□□□ -1.71
SYNE2-223ENST00000557005 LIN7CQ9NUP9 197 aaKnown RBP4.39□□□□□ -1.71
SYNE2-223ENST00000557005 OBP2AQ9NY56 170 aa4.39□□□□□ -1.71
SYNE2-223ENST00000557005 CASP8AP2Q9UKL3 1982 aa4.39□□□□□ -1.71
SYNE2-223ENST00000557005 MAP1LC3B2A6NCE7 125 aa4.39□□□□□ -1.71
SYNE2-223ENST00000557005 AQP7P3A6NL99 342 aa4.39□□□□□ -1.71
SYNE2-223ENST00000557005 ACTL6BO94805 426 aa4.39□□□□□ -1.71
SYNE2-223ENST00000557005 FUT6P51993 359 aa4.39□□□□□ -1.71
SYNE2-223ENST00000557005 FOXK1P85037 733 aa4.39□□□□□ -1.71
SYNE2-223ENST00000557005 SLC38A11Q08AI6 406 aa4.39□□□□□ -1.71
SYNE2-223ENST00000557005 CATR1Q13166 79 aa4.39□□□□□ -1.71
SYNE2-223ENST00000557005 UBE2V2Q15819 145 aa4.39□□□□□ -1.71
SYNE2-223ENST00000557005 HLA-BQ31612 363 aa4.39□□□□□ -1.71
SYNE2-223ENST00000557005 TIPARPQ7Z3E1 657 aaKnown RBP4.39□□□□□ -1.71
SYNE2-223ENST00000557005 PPP1R3BQ86XI6 285 aa4.39□□□□□ -1.71
SYNE2-223ENST00000557005 GCNT2Q8N0V5 402 aa4.39□□□□□ -1.71
SYNE2-223ENST00000557005 GAPTQ8N292 157 aa4.39□□□□□ -1.71
SYNE2-223ENST00000557005 OR2C3Q8N628 320 aa4.39□□□□□ -1.71
SYNE2-223ENST00000557005 CMTM2Q8TAZ6 248 aa4.39□□□□□ -1.71
SYNE2-223ENST00000557005 ZNF721Q8TF20 911 aa4.39□□□□□ -1.71
SYNE2-223ENST00000557005 BTF3L4Q96K17 158 aa4.39□□□□□ -1.71
SYNE2-223ENST00000557005 CDCA3Q99618 268 aaPredicted RBP4.39□□□□□ -1.71
SYNE2-223ENST00000557005 MAP1LC3BQ9GZQ8 125 aa4.39□□□□□ -1.71
SYNE2-223ENST00000557005 AURKAIP1Q9NWT8 199 aaPredicted RBP4.39□□□□□ -1.71
SYNE2-223ENST00000557005 TP53TG5Q9Y2B4 290 aa4.39□□□□□ -1.71
SYNE2-223ENST00000557005 DMRT1Q9Y5R6 373 aa4.39□□□□□ -1.71
SYNE2-223ENST00000557005 A0A1W2PP11 408 aa4.39□□□□□ -1.71
SYNE2-223ENST00000557005 CLEC18AA5D8T8 446 aa4.39□□□□□ -1.71
SYNE2-223ENST00000557005 MPPED1O15442 326 aa4.39□□□□□ -1.71
SYNE2-223ENST00000557005 MOSPD3O75425 235 aa4.39□□□□□ -1.71
SYNE2-223ENST00000557005 CD8AP01732 235 aa4.39□□□□□ -1.71
SYNE2-223ENST00000557005 FAM157BP0CG42 384 aa4.39□□□□□ -1.71
SYNE2-223ENST00000557005 ACKR3P25106 362 aa4.39□□□□□ -1.71
SYNE2-223ENST00000557005 CEACAM6P40199 344 aa4.39□□□□□ -1.71
SYNE2-223ENST00000557005 EIF1P41567 113 aaKnown RBP4.39□□□□□ -1.71
SYNE2-223ENST00000557005 RPL29P47914 159 aaKnown RBP4.39□□□□□ -1.71
SYNE2-223ENST00000557005 HNRNPA3P51991 378 aaKnown RBP4.39□□□□□ -1.71
SYNE2-223ENST00000557005 HIST1H3AP68431 136 aa4.39□□□□□ -1.71
SYNE2-223ENST00000557005 ARTNQ5T4W7 220 aa4.39□□□□□ -1.71
SYNE2-223ENST00000557005 DHRS11Q6UWP2 260 aa4.39□□□□□ -1.71
SYNE2-223ENST00000557005 C9orf40Q8IXQ3 194 aa4.39□□□□□ -1.71
SYNE2-223ENST00000557005 FBXL14Q8N1E6 418 aa4.39□□□□□ -1.71
SYNE2-223ENST00000557005 CLEC18CQ8NCF0 446 aa4.39□□□□□ -1.71
SYNE2-223ENST00000557005 OR1F12Q8NHA8 337 aa4.39□□□□□ -1.71
SYNE2-223ENST00000557005 MSI2Q96DH6 328 aaKnown RBP4.39□□□□□ -1.71
SYNE2-223ENST00000557005 ATG101Q9BSB4 218 aa4.39□□□□□ -1.71
SYNE2-223ENST00000557005 CARHSP1Q9Y2V2 147 aaKnown RBP4.39□□□□□ -1.71
SYNE2-223ENST00000557005 RNF222A6NCQ9 220 aa4.39□□□□□ -1.71
SYNE2-223ENST00000557005 PRR32B1ATL7 298 aa4.39□□□□□ -1.71
SYNE2-223ENST00000557005 EIF1BO60739 113 aaKnown RBP4.39□□□□□ -1.71
SYNE2-223ENST00000557005 TTRP02766 147 aa4.39□□□□□ -1.71
SYNE2-223ENST00000557005 HEXAP06865 529 aa4.39□□□□□ -1.71
SYNE2-223ENST00000557005 RUNX1Q01196 453 aa4.39□□□□□ -1.71
SYNE2-223ENST00000557005 RSPO4Q2I0M5 234 aaPredicted RBP4.39□□□□□ -1.71
SYNE2-223ENST00000557005 TBC1D28Q2M2D7 210 aa4.39□□□□□ -1.71
SYNE2-223ENST00000557005 CXorf67Q86X51 503 aaPredicted RBP4.39□□□□□ -1.71
SYNE2-223ENST00000557005 POC1AQ8NBT0 407 aa4.39□□□□□ -1.71
SYNE2-223ENST00000557005 BSCL2Q96G97 398 aaPredicted RBP4.39□□□□□ -1.71
SYNE2-223ENST00000557005 CCDC74BQ96LY2 380 aa4.39□□□□□ -1.71
SYNE2-223ENST00000557005 SOX7Q9BT81 388 aa4.39□□□□□ -1.71
SYNE2-223ENST00000557005 COA4Q9NYJ1 87 aa4.39□□□□□ -1.71
SYNE2-223ENST00000557005 ZNF107Q9UII5 783 aaPredicted RBP4.39□□□□□ -1.71
SYNE2-223ENST00000557005 ZDHHC8Q9ULC8 765 aa4.39□□□□□ -1.71
SYNE2-223ENST00000557005 GREB1Q4ZG55 1949 aa4.39□□□□□ -1.71
SYNE2-223ENST00000557005 MEX3AA1L020 520 aaKnown RBP4.38□□□□□ -1.71
SYNE2-223ENST00000557005 FAM166BA8MTA8 275 aa4.38□□□□□ -1.71
SYNE2-223ENST00000557005 H0YL77 283 aa4.38□□□□□ -1.71
SYNE2-223ENST00000557005 TCF21O43680 179 aa4.38□□□□□ -1.71
SYNE2-223ENST00000557005 CHST1O43916 411 aa4.38□□□□□ -1.71
SYNE2-223ENST00000557005 LYPD3O95274 346 aa4.38□□□□□ -1.71
SYNE2-223ENST00000557005 ABHD16AO95870 558 aa4.38□□□□□ -1.71
SYNE2-223ENST00000557005 TBX6O95947 436 aaPredicted RBP4.38□□□□□ -1.71
SYNE2-223ENST00000557005 APOA2P02652 100 aa4.38□□□□□ -1.71
SYNE2-223ENST00000557005 IRF2P14316 349 aa4.38□□□□□ -1.71
SYNE2-223ENST00000557005 ZNF17P17021 662 aa4.38□□□□□ -1.71
SYNE2-223ENST00000557005 GCH1P30793 250 aa4.38□□□□□ -1.71
SYNE2-223ENST00000557005 P2RY4P51582 365 aa4.38□□□□□ -1.71
SYNE2-223ENST00000557005 MGAT2Q10469 447 aa4.38□□□□□ -1.71
SYNE2-223ENST00000557005 PHYHD1Q5SRE7 291 aa4.38□□□□□ -1.71
SYNE2-223ENST00000557005 WDR25Q64LD2 544 aaPredicted RBP4.38□□□□□ -1.71
SYNE2-223ENST00000557005 LIAT1Q6ZQX7 453 aa4.38□□□□□ -1.71
SYNE2-223ENST00000557005 BIVMQ86UB2 503 aa4.38□□□□□ -1.71
SYNE2-223ENST00000557005 OR10AD1Q8NGE0 317 aa4.38□□□□□ -1.71
SYNE2-223ENST00000557005 PHOSPHO2Q8TCD6 241 aa4.38□□□□□ -1.71
SYNE2-223ENST00000557005 TMEM68Q96MH6 324 aa4.38□□□□□ -1.71
SYNE2-223ENST00000557005 TOX2Q96NM4 488 aa4.38□□□□□ -1.71
SYNE2-223ENST00000557005 LRRC3BQ96PB8 259 aa4.38□□□□□ -1.71
SYNE2-223ENST00000557005 CACNG5Q9UF02 275 aa4.38□□□□□ -1.71
SYNE2-223ENST00000557005 FZR1Q9UM11 496 aa4.38□□□□□ -1.71
SYNE2-223ENST00000557005 NLRC5Q86WI3 1866 aa4.38□□□□□ -1.71
SYNE2-223ENST00000557005 KIAA1324LA8MWY0 1029 aaPredicted RBP4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms