RNA–Protein interactions for RNA: ENST00000555904.1

ABCD4-223, Transcript of ATP binding cassette subfamily D member 4, human

TSL 3

Gene ABCD4, Length 582 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ABCD4-223	ENST00000555904	PHF21A	Q96BD5	680 aa		10.48	□□□□□ -0.73
ABCD4-223	ENST00000555904	RAB39B	Q96DA2	213 aa		10.48	□□□□□ -0.73
ABCD4-223	ENST00000555904	SEH1L	Q96EE3	360 aa		10.48	□□□□□ -0.73
ABCD4-223	ENST00000555904	MED30	Q96HR3	178 aa		10.48	□□□□□ -0.73
ABCD4-223	ENST00000555904	C1orf147	Q96MC9	270 aa	Predicted RBP	10.48	□□□□□ -0.73
ABCD4-223	ENST00000555904		Q96MF0	132 aa		10.48	□□□□□ -0.73
ABCD4-223	ENST00000555904	TMEM246	Q9BRR3	403 aa		10.48	□□□□□ -0.73
ABCD4-223	ENST00000555904	DCUN1D5	Q9BTE7	237 aa		10.48	□□□□□ -0.73
ABCD4-223	ENST00000555904	BANF2	Q9H503	90 aa		10.48	□□□□□ -0.73
ABCD4-223	ENST00000555904	SPACA1	Q9HBV2	294 aa		10.48	□□□□□ -0.73
ABCD4-223	ENST00000555904	FBLN5	Q9UBX5	448 aa		10.48	□□□□□ -0.73
ABCD4-223	ENST00000555904	MIOX	Q9UGB7	285 aa		10.48	□□□□□ -0.73
ABCD4-223	ENST00000555904	RAB22A	Q9UL26	194 aa		10.48	□□□□□ -0.73
ABCD4-223	ENST00000555904	ABCA12	Q86UK0	2595 aa		10.48	□□□□□ -0.73
ABCD4-223	ENST00000555904	TANC2	Q9HCD6	1990 aa		10.47	□□□□□ -0.73
ABCD4-223	ENST00000555904		A0A0B4J203	849 aa		10.47	□□□□□ -0.73
ABCD4-223	ENST00000555904	TMEM272	A0A1B0GTI8	110 aa		10.47	□□□□□ -0.73
ABCD4-223	ENST00000555904		A0A1W2PP11	408 aa		10.47	□□□□□ -0.73
ABCD4-223	ENST00000555904	TMEM14DP	A8MWL7	114 aa		10.47	□□□□□ -0.73
ABCD4-223	ENST00000555904	DEGS1	O15121	323 aa		10.47	□□□□□ -0.73
ABCD4-223	ENST00000555904	ADAM20	O43506	726 aa		10.47	□□□□□ -0.73
ABCD4-223	ENST00000555904	SCGN	O76038	276 aa		10.47	□□□□□ -0.73
ABCD4-223	ENST00000555904	OR7C1	O76099	320 aa	Predicted RBP	10.47	□□□□□ -0.73
ABCD4-223	ENST00000555904	CHRM2	P08172	466 aa		10.47	□□□□□ -0.73
ABCD4-223	ENST00000555904	PSG2	P11465	335 aa		10.47	□□□□□ -0.73
ABCD4-223	ENST00000555904	USF1	P22415	310 aa	Predicted RBP	10.47	□□□□□ -0.73
ABCD4-223	ENST00000555904	GABRR1	P24046	479 aa		10.47	□□□□□ -0.73
ABCD4-223	ENST00000555904	DUSP1	P28562	367 aa		10.47	□□□□□ -0.73
ABCD4-223	ENST00000555904	RPS27A	P62979	156 aa	Known RBP	10.47	□□□□□ -0.73
ABCD4-223	ENST00000555904	DYNC1I2	Q13409	638 aa	Known RBP	10.47	□□□□□ -0.73
ABCD4-223	ENST00000555904	MPV17L	Q2QL34	196 aa		10.47	□□□□□ -0.73
ABCD4-223	ENST00000555904	OR10K2	Q6IF99	312 aa		10.47	□□□□□ -0.73
ABCD4-223	ENST00000555904	DNM1P46	Q6ZS02	220 aa		10.47	□□□□□ -0.73
ABCD4-223	ENST00000555904	ZNF561	Q8N587	486 aa		10.47	□□□□□ -0.73
ABCD4-223	ENST00000555904	ASCC1	Q8N9N2	400 aa	Known RBP	10.47	□□□□□ -0.73
ABCD4-223	ENST00000555904	CHST4	Q8NCG5	386 aa		10.47	□□□□□ -0.73
ABCD4-223	ENST00000555904	OR8B3	Q8NGG8	313 aa		10.47	□□□□□ -0.73
ABCD4-223	ENST00000555904	ANGPTL6	Q8NI99	470 aa		10.47	□□□□□ -0.73
ABCD4-223	ENST00000555904	PTX4	Q96A99	478 aa		10.47	□□□□□ -0.73
ABCD4-223	ENST00000555904	POM121	Q96HA1	1249 aa		10.47	□□□□□ -0.73
ABCD4-223	ENST00000555904	OR8B2	Q96RD0	313 aa		10.47	□□□□□ -0.73
ABCD4-223	ENST00000555904	BARHL1	Q9BZE3	327 aa		10.47	□□□□□ -0.73
ABCD4-223	ENST00000555904	KCNK15	Q9H427	330 aa		10.47	□□□□□ -0.73
ABCD4-223	ENST00000555904	ZNF665	Q9H7R5	613 aa		10.47	□□□□□ -0.73
ABCD4-223	ENST00000555904	TMEM165	Q9HC07	324 aa		10.47	□□□□□ -0.73
ABCD4-223	ENST00000555904	IL36RN	Q9UBH0	155 aa		10.47	□□□□□ -0.73
ABCD4-223	ENST00000555904	OR5V1	Q9UGF6	321 aa		10.47	□□□□□ -0.73
ABCD4-223	ENST00000555904	SPATA2	Q9UM82	520 aa		10.47	□□□□□ -0.73
ABCD4-223	ENST00000555904	CACNA1D	Q01668	2161 aa		10.47	□□□□□ -0.73
ABCD4-223	ENST00000555904	ANKRD17	O75179	2603 aa	Known RBP	10.46	□□□□□ -0.73
ABCD4-223	ENST00000555904	IGKV1D-17	A0A075B6S4	117 aa		10.46	□□□□□ -0.73
ABCD4-223	ENST00000555904	FAM90A10P	A6NDY2	464 aa		10.46	□□□□□ -0.73
ABCD4-223	ENST00000555904	FAM90A18P	A6NE21	464 aa		10.46	□□□□□ -0.73
ABCD4-223	ENST00000555904	FAM90A16P	A6NEW6	464 aa		10.46	□□□□□ -0.73
ABCD4-223	ENST00000555904		A6NHS1	94 aa		10.46	□□□□□ -0.73
ABCD4-223	ENST00000555904	FAM90A20P	A6NIJ5	464 aa		10.46	□□□□□ -0.73
ABCD4-223	ENST00000555904	FAM90A8P	A6NJQ4	464 aa		10.46	□□□□□ -0.73
ABCD4-223	ENST00000555904	FAM90A7P	A6NKC0	464 aa		10.46	□□□□□ -0.73
ABCD4-223	ENST00000555904	CEACAM18	A8MTB9	384 aa		10.46	□□□□□ -0.73
ABCD4-223	ENST00000555904	FAM90A22P	A8MWA6	464 aa		10.46	□□□□□ -0.73
ABCD4-223	ENST00000555904	FAM90A12P	A8MX19	464 aa		10.46	□□□□□ -0.73
ABCD4-223	ENST00000555904	FAM90A5P	A8MXJ8	464 aa		10.46	□□□□□ -0.73
ABCD4-223	ENST00000555904	FAM90A23P	A8MXZ1	464 aa		10.46	□□□□□ -0.73
ABCD4-223	ENST00000555904	VWC2L	B2RUY7	222 aa		10.46	□□□□□ -0.73
ABCD4-223	ENST00000555904	GEMIN2	O14893	280 aa	Known RBP	10.46	□□□□□ -0.73
ABCD4-223	ENST00000555904	RGS5	O15539	181 aa		10.46	□□□□□ -0.73
ABCD4-223	ENST00000555904	NDUFB3	O43676	98 aa		10.46	□□□□□ -0.73
ABCD4-223	ENST00000555904	PAH	P00439	452 aa		10.46	□□□□□ -0.73
ABCD4-223	ENST00000555904	FAM90A15P	P0C7V4	464 aa		10.46	□□□□□ -0.73
ABCD4-223	ENST00000555904	FAM90A13P	P0C7W8	464 aa		10.46	□□□□□ -0.73
ABCD4-223	ENST00000555904	FAM90A14P	P0C7W9	464 aa		10.46	□□□□□ -0.73
ABCD4-223	ENST00000555904	FAM90A24P	P0C7X0	464 aa		10.46	□□□□□ -0.73
ABCD4-223	ENST00000555904	QRFP	P83859	136 aa		10.46	□□□□□ -0.73
ABCD4-223	ENST00000555904	UNC119	Q13432	240 aa		10.46	□□□□□ -0.73
ABCD4-223	ENST00000555904	TAF9	Q16594	264 aa		10.46	□□□□□ -0.73
ABCD4-223	ENST00000555904	ESCO2	Q56NI9	601 aa		10.46	□□□□□ -0.73
ABCD4-223	ENST00000555904	LRRC10	Q5BKY1	277 aa		10.46	□□□□□ -0.73
ABCD4-223	ENST00000555904	UBE2NL	Q5JXB2	153 aa		10.46	□□□□□ -0.73
ABCD4-223	ENST00000555904	SAMD12	Q8N8I0	201 aa		10.46	□□□□□ -0.73
ABCD4-223	ENST00000555904	TMEM185A	Q8NFB2	350 aa		10.46	□□□□□ -0.73
ABCD4-223	ENST00000555904	OR56B1	Q8NGI3	324 aa		10.46	□□□□□ -0.73
ABCD4-223	ENST00000555904	PPP1R35	Q8TAP8	253 aa		10.46	□□□□□ -0.73
ABCD4-223	ENST00000555904	NEIL1	Q96FI4	390 aa	Predicted RBP	10.46	□□□□□ -0.73
ABCD4-223	ENST00000555904		Q96M66	194 aa		10.46	□□□□□ -0.73
ABCD4-223	ENST00000555904	CCL13	Q99616	98 aa		10.46	□□□□□ -0.73
ABCD4-223	ENST00000555904	ATG5	Q9H1Y0	275 aa		10.46	□□□□□ -0.73
ABCD4-223	ENST00000555904	RHBDL2	Q9NX52	303 aa		10.46	□□□□□ -0.73
ABCD4-223	ENST00000555904	COMMD3	Q9UBI1	195 aa		10.46	□□□□□ -0.73
ABCD4-223	ENST00000555904	NAV2	Q8IVL1	2488 aa		10.45	□□□□□ -0.74
ABCD4-223	ENST00000555904	DYSF	O75923	2080 aa		10.45	□□□□□ -0.74
ABCD4-223	ENST00000555904	SIRPB1	O00241	398 aa		10.45	□□□□□ -0.74
ABCD4-223	ENST00000555904	LDLRAD4	O15165	306 aa		10.45	□□□□□ -0.74
ABCD4-223	ENST00000555904	SIGLEC5	O15389	551 aa		10.45	□□□□□ -0.74
ABCD4-223	ENST00000555904	OR2H2	O95918	312 aa		10.45	□□□□□ -0.74
ABCD4-223	ENST00000555904	PITPNB	P48739	271 aa		10.45	□□□□□ -0.74
ABCD4-223	ENST00000555904	CEBPD	P49716	269 aa	Predicted RBP	10.45	□□□□□ -0.74
ABCD4-223	ENST00000555904	COL10A1	Q03692	680 aa		10.45	□□□□□ -0.74
ABCD4-223	ENST00000555904	PAN3	Q58A45	887 aa	Known RBP	10.45	□□□□□ -0.74
ABCD4-223	ENST00000555904	ATAD3C	Q5T2N8	411 aa		10.45	□□□□□ -0.74
ABCD4-223	ENST00000555904	ATPAF1	Q5TC12	328 aa	Predicted RBP	10.45	□□□□□ -0.74

Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms