RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 KRTAP1-3Q8IUG1 177 aa4.71□□□□□ -1.66
LIMA1-212ENST00000552491 Q8N3U1 123 aa4.71□□□□□ -1.66
LIMA1-212ENST00000552491 WDSUB1Q8N9V3 476 aa4.71□□□□□ -1.66
LIMA1-212ENST00000552491 NAXEQ8NCW5 288 aa4.71□□□□□ -1.66
LIMA1-212ENST00000552491 OR5L1Q8NGL2 311 aa4.71□□□□□ -1.66
LIMA1-212ENST00000552491 CD300LFQ8TDQ1 290 aa4.71□□□□□ -1.66
LIMA1-212ENST00000552491 RTN4IP1Q8WWV3 396 aaPredicted RBP4.71□□□□□ -1.66
LIMA1-212ENST00000552491 NABP1Q96AH0 204 aa4.71□□□□□ -1.66
LIMA1-212ENST00000552491 SGK3Q96BR1 496 aa4.71□□□□□ -1.66
LIMA1-212ENST00000552491 MSI2Q96DH6 328 aaKnown RBP4.71□□□□□ -1.66
LIMA1-212ENST00000552491 GALNT14Q96FL9 552 aa4.71□□□□□ -1.66
LIMA1-212ENST00000552491 C18orf12Q96KH6 178 aa4.71□□□□□ -1.66
LIMA1-212ENST00000552491 ZNF385AQ96PM9 386 aaKnown RBP4.71□□□□□ -1.66
LIMA1-212ENST00000552491 PBDC1Q9BVG4 233 aa4.71□□□□□ -1.66
LIMA1-212ENST00000552491 SLC35B3Q9H1N7 401 aa4.71□□□□□ -1.66
LIMA1-212ENST00000552491 HSF4Q9ULV5 492 aa4.71□□□□□ -1.66
LIMA1-212ENST00000552491 HDGFL3Q9Y3E1 203 aa4.71□□□□□ -1.66
LIMA1-212ENST00000552491 STRAPQ9Y3F4 350 aaKnown RBP4.71□□□□□ -1.66
LIMA1-212ENST00000552491 IGKV1-12A0A0C4DH73 117 aa4.7□□□□□ -1.66
LIMA1-212ENST00000552491 A0A1B0GW64 132 aa4.7□□□□□ -1.66
LIMA1-212ENST00000552491 AQP7P3A6NL99 342 aa4.7□□□□□ -1.66
LIMA1-212ENST00000552491 C2CD4DB7Z1M9 353 aa4.7□□□□□ -1.66
LIMA1-212ENST00000552491 H7C1Q1 480 aa4.7□□□□□ -1.66
LIMA1-212ENST00000552491 AP4M1O00189 453 aa4.7□□□□□ -1.66
LIMA1-212ENST00000552491 YIF1AO95070 293 aa4.7□□□□□ -1.66
LIMA1-212ENST00000552491 IGKV1D-12P01611 117 aa4.7□□□□□ -1.66
LIMA1-212ENST00000552491 PRH1P02810 166 aa4.7□□□□□ -1.66
LIMA1-212ENST00000552491 CD27P26842 260 aa4.7□□□□□ -1.66
LIMA1-212ENST00000552491 OTX1P32242 354 aaPredicted RBP4.7□□□□□ -1.66
LIMA1-212ENST00000552491 LSM6P62312 80 aaKnown RBP4.7□□□□□ -1.66
LIMA1-212ENST00000552491 PIGYQ3MUY2 71 aa4.7□□□□□ -1.66
LIMA1-212ENST00000552491 HIST2H3AQ71DI3 136 aa4.7□□□□□ -1.66
LIMA1-212ENST00000552491 PLXDC1Q8IUK5 500 aa4.7□□□□□ -1.66
LIMA1-212ENST00000552491 LRTM2Q8N967 370 aa4.7□□□□□ -1.66
LIMA1-212ENST00000552491 ZNF565Q8N9K5 539 aa4.7□□□□□ -1.66
LIMA1-212ENST00000552491 UCN2Q96RP3 112 aa4.7□□□□□ -1.66
LIMA1-212ENST00000552491 TGIF2Q9GZN2 237 aa4.7□□□□□ -1.66
LIMA1-212ENST00000552491 SMDT1Q9H4I9 107 aa4.7□□□□□ -1.66
LIMA1-212ENST00000552491 METTL7AQ9H8H3 244 aa4.7□□□□□ -1.66
LIMA1-212ENST00000552491 AKIRIN1Q9H9L7 192 aaPredicted RBP4.7□□□□□ -1.66
LIMA1-212ENST00000552491 KCNJ16Q9NPI9 418 aa4.7□□□□□ -1.66
LIMA1-212ENST00000552491 SLC2A9Q9NRM0 540 aa4.7□□□□□ -1.66
LIMA1-212ENST00000552491 SEMA5BQ9P283 1151 aa4.7□□□□□ -1.66
LIMA1-212ENST00000552491 PUS1Q9Y606 427 aaKnown RBP eCLIP4.7□□□□□ -1.66
LIMA1-212ENST00000552491 CEP192Q8TEP8 1941 aa4.7□□□□□ -1.66
LIMA1-212ENST00000552491 IGLV3-12A0A075B6K2 115 aa4.7□□□□□ -1.66
LIMA1-212ENST00000552491 IGLV3-32A0A0A0MS00 114 aa4.7□□□□□ -1.66
LIMA1-212ENST00000552491 NSG1A0A0A6YYJ2 146 aa4.7□□□□□ -1.66
LIMA1-212ENST00000552491 LOC102725191A0A1B0GVB3 256 aa4.7□□□□□ -1.66
LIMA1-212ENST00000552491 FAM24AA6NFZ4 105 aa4.7□□□□□ -1.66
LIMA1-212ENST00000552491 ZNF850A8MQ14 1090 aa4.7□□□□□ -1.66
LIMA1-212ENST00000552491 CDRT15L2A8MXV6 281 aa4.7□□□□□ -1.66
LIMA1-212ENST00000552491 GEMIN2O14893 280 aaKnown RBP4.7□□□□□ -1.66
LIMA1-212ENST00000552491 TLX3O43711 291 aaPredicted RBP4.7□□□□□ -1.66
LIMA1-212ENST00000552491 NDUFS6O75380 124 aaKnown RBP4.7□□□□□ -1.66
LIMA1-212ENST00000552491 PIAS2O75928 621 aa4.7□□□□□ -1.66
LIMA1-212ENST00000552491 DKK1O94907 266 aa4.7□□□□□ -1.66
LIMA1-212ENST00000552491 IFNA17P01571 189 aa4.7□□□□□ -1.66
LIMA1-212ENST00000552491 FBP1P09467 338 aa4.7□□□□□ -1.66
LIMA1-212ENST00000552491 ZNF728P0DKX0 622 aa4.7□□□□□ -1.66
LIMA1-212ENST00000552491 MSR1P21757 451 aa4.7□□□□□ -1.66
LIMA1-212ENST00000552491 GUCA1AP43080 201 aaPredicted RBP4.7□□□□□ -1.66
LIMA1-212ENST00000552491 MTCP1P56278 107 aa4.7□□□□□ -1.66
LIMA1-212ENST00000552491 IL13RA2Q14627 380 aa4.7□□□□□ -1.66
LIMA1-212ENST00000552491 DAZAP2Q15038 168 aaPredicted RBP4.7□□□□□ -1.66
LIMA1-212ENST00000552491 ZNF343Q6P1L6 599 aa4.7□□□□□ -1.66
LIMA1-212ENST00000552491 SPSB3Q6PJ21 355 aa4.7□□□□□ -1.66
LIMA1-212ENST00000552491 HEPN1Q6WQI6 88 aa4.7□□□□□ -1.66
LIMA1-212ENST00000552491 ZNF574Q6ZN55 896 aaPredicted RBP4.7□□□□□ -1.66
LIMA1-212ENST00000552491 Q6ZSR3 168 aa4.7□□□□□ -1.66
LIMA1-212ENST00000552491 ODF3L1Q8IXM7 274 aa4.7□□□□□ -1.66
LIMA1-212ENST00000552491 SLC25A45Q8N413 288 aa4.7□□□□□ -1.66
LIMA1-212ENST00000552491 LFNGQ8NES3 379 aa4.7□□□□□ -1.66
LIMA1-212ENST00000552491 GJC3Q8NFK1 279 aa4.7□□□□□ -1.66
LIMA1-212ENST00000552491 FAM213BQ8TBF2 198 aa4.7□□□□□ -1.66
LIMA1-212ENST00000552491 TMEM171Q8WVE6 324 aa4.7□□□□□ -1.66
LIMA1-212ENST00000552491 MR1Q95460 341 aa4.7□□□□□ -1.66
LIMA1-212ENST00000552491 NTNG2Q96CW9 530 aa4.7□□□□□ -1.66
LIMA1-212ENST00000552491 C10orf35Q96D05 121 aa4.7□□□□□ -1.66
LIMA1-212ENST00000552491 JSRP1Q96MG2 331 aaPredicted RBP4.7□□□□□ -1.66
LIMA1-212ENST00000552491 TP53RKQ96S44 253 aa4.7□□□□□ -1.66
LIMA1-212ENST00000552491 GPHA2Q96T91 129 aa4.7□□□□□ -1.66
LIMA1-212ENST00000552491 SUCNR1Q9BXA5 334 aa4.7□□□□□ -1.66
LIMA1-212ENST00000552491 TMPRSS5Q9H3S3 457 aa4.7□□□□□ -1.66
LIMA1-212ENST00000552491 C11orf1Q9H5F2 150 aa4.7□□□□□ -1.66
LIMA1-212ENST00000552491 NECAP2Q9NVZ3 263 aa4.7□□□□□ -1.66
LIMA1-212ENST00000552491 MYOTQ9UBF9 498 aa4.7□□□□□ -1.66
LIMA1-212ENST00000552491 MMP24Q9Y5R2 645 aa4.7□□□□□ -1.66
LIMA1-212ENST00000552491 FAM230AA0A1W2PPH8 454 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 ZNF724A8MTY0 619 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 M0R135 149 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 DUX1O43812 170 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 CELA2AP08217 269 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 CHATP28329 748 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 DUSP1P28562 367 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 HTR5AP47898 357 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 HNRNPKP61978 463 aaKnown RBP eCLIP4.69□□□□□ -1.66
LIMA1-212ENST00000552491 HIST1H3AP68431 136 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 H3F3AP84243 136 aa4.69□□□□□ -1.66
LIMA1-212ENST00000552491 EWSR1Q01844 656 aaKnown RBP eCLIP4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms