RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 PAGE3Q5JUK9 113 aa5.09□□□□□ -1.59
LIMA1-204ENST00000549064 OSR2Q8N2R0 312 aa5.09□□□□□ -1.59
LIMA1-204ENST00000549064 CSNK2A3Q8NEV1 391 aa5.09□□□□□ -1.59
LIMA1-204ENST00000549064 OR4M1Q8NGD0 313 aa5.09□□□□□ -1.59
LIMA1-204ENST00000549064 OR5K1Q8NHB7 308 aa5.09□□□□□ -1.59
LIMA1-204ENST00000549064 RPL3LQ92901 407 aaKnown RBP5.09□□□□□ -1.59
LIMA1-204ENST00000549064 SPSB1Q96BD6 273 aa5.09□□□□□ -1.59
LIMA1-204ENST00000549064 BPIFA2Q96DR5 249 aa5.09□□□□□ -1.59
LIMA1-204ENST00000549064 MALSU1Q96EH3 234 aa5.09□□□□□ -1.59
LIMA1-204ENST00000549064 MED30Q96HR3 178 aa5.09□□□□□ -1.59
LIMA1-204ENST00000549064 TSSK2Q96PF2 358 aa5.09□□□□□ -1.59
LIMA1-204ENST00000549064 MS4A10Q96PG2 267 aa5.09□□□□□ -1.59
LIMA1-204ENST00000549064 GFI1Q99684 422 aa5.09□□□□□ -1.59
LIMA1-204ENST00000549064 PITX2Q99697 317 aa5.09□□□□□ -1.59
LIMA1-204ENST00000549064 ATF6BQ99941 703 aa5.09□□□□□ -1.59
LIMA1-204ENST00000549064 TM2D3Q9BRN9 247 aa5.09□□□□□ -1.59
LIMA1-204ENST00000549064 SDR39U1Q9NRG7 319 aaPredicted RBP5.09□□□□□ -1.59
LIMA1-204ENST00000549064 RIMS3Q9UJD0 308 aa5.09□□□□□ -1.59
LIMA1-204ENST00000549064 HILPDAQ9Y5L2 63 aa5.09□□□□□ -1.59
LIMA1-204ENST00000549064 N6AMT1Q9Y5N5 214 aa5.09□□□□□ -1.59
LIMA1-204ENST00000549064 DSCAML1Q8TD84 2053 aa5.09□□□□□ -1.59
LIMA1-204ENST00000549064 IGKV1D-17A0A075B6S4 117 aa5.08□□□□□ -1.6
LIMA1-204ENST00000549064 MEX3AA1L020 520 aaKnown RBP5.08□□□□□ -1.6
LIMA1-204ENST00000549064 PSMB11A5LHX3 300 aa5.08□□□□□ -1.6
LIMA1-204ENST00000549064 M0R135 149 aa5.08□□□□□ -1.6
LIMA1-204ENST00000549064 CCL24O00175 119 aa5.08□□□□□ -1.6
LIMA1-204ENST00000549064 DCTN6O00399 190 aa5.08□□□□□ -1.6
LIMA1-204ENST00000549064 SOCS2O14508 198 aa5.08□□□□□ -1.6
LIMA1-204ENST00000549064 XKRYO14609 159 aa5.08□□□□□ -1.6
LIMA1-204ENST00000549064 OR5F1O95221 314 aa5.08□□□□□ -1.6
LIMA1-204ENST00000549064 IGLV2-14P01704 120 aa5.08□□□□□ -1.6
LIMA1-204ENST00000549064 HCKP08631 526 aa5.08□□□□□ -1.6
LIMA1-204ENST00000549064 NAA10P41227 235 aaPredicted RBP5.08□□□□□ -1.6
LIMA1-204ENST00000549064 VEGFCP49767 419 aa5.08□□□□□ -1.6
LIMA1-204ENST00000549064 ENTPD1P49961 510 aa5.08□□□□□ -1.6
LIMA1-204ENST00000549064 DYNLT3P51808 116 aa5.08□□□□□ -1.6
LIMA1-204ENST00000549064 CRYBA2P53672 197 aa5.08□□□□□ -1.6
LIMA1-204ENST00000549064 UBE2V1Q13404 147 aa5.08□□□□□ -1.6
LIMA1-204ENST00000549064 KRR1Q13601 381 aaKnown RBP5.08□□□□□ -1.6
LIMA1-204ENST00000549064 WHAMMP3Q1A5X7 153 aa5.08□□□□□ -1.6
LIMA1-204ENST00000549064 RFX4Q33E94 735 aa5.08□□□□□ -1.6
LIMA1-204ENST00000549064 ZNF260Q3ZCT1 412 aa5.08□□□□□ -1.6
LIMA1-204ENST00000549064 SLC18B1Q6NT16 456 aa5.08□□□□□ -1.6
LIMA1-204ENST00000549064 FAM122BQ7Z309 247 aa5.08□□□□□ -1.6
LIMA1-204ENST00000549064 TSEN54Q7Z6J9 526 aaKnown RBP5.08□□□□□ -1.6
LIMA1-204ENST00000549064 PIGWQ7Z7B1 504 aa5.08□□□□□ -1.6
LIMA1-204ENST00000549064 EGFL6Q8IUX8 553 aa5.08□□□□□ -1.6
LIMA1-204ENST00000549064 IFT20Q8IY31 132 aa5.08□□□□□ -1.6
LIMA1-204ENST00000549064 ZNF799Q96GE5 643 aa5.08□□□□□ -1.6
LIMA1-204ENST00000549064 NOL4LQ96MY1 436 aaPredicted RBP5.08□□□□□ -1.6
LIMA1-204ENST00000549064 OR52B2Q96RD2 323 aa5.08□□□□□ -1.6
LIMA1-204ENST00000549064 SLC25A33Q9BSK2 321 aa5.08□□□□□ -1.6
LIMA1-204ENST00000549064 DNTTIP1Q9H147 329 aa5.08□□□□□ -1.6
LIMA1-204ENST00000549064 VNN3Q9NY84 501 aa5.08□□□□□ -1.6
LIMA1-204ENST00000549064 ZNF222Q9UK12 451 aa5.08□□□□□ -1.6
LIMA1-204ENST00000549064 SH3GLB1Q9Y371 365 aa5.08□□□□□ -1.6
LIMA1-204ENST00000549064 TBL2Q9Y4P3 447 aaKnown RBP5.08□□□□□ -1.6
LIMA1-204ENST00000549064 OR2AT4A6NND4 320 aa5.07□□□□□ -1.6
LIMA1-204ENST00000549064 ANKRD30BLA7E2S9 258 aa5.07□□□□□ -1.6
LIMA1-204ENST00000549064 EFCAB9A8MZ26 197 aa5.07□□□□□ -1.6
LIMA1-204ENST00000549064 PRR23D1E9PI22 279 aaPredicted RBP5.07□□□□□ -1.6
LIMA1-204ENST00000549064 J3QR06 171 aa5.07□□□□□ -1.6
LIMA1-204ENST00000549064 HSPA12AO43301 675 aa5.07□□□□□ -1.6
LIMA1-204ENST00000549064 CD14P08571 375 aa5.07□□□□□ -1.6
LIMA1-204ENST00000549064 PRR23D2P0DMB1 279 aaPredicted RBP5.07□□□□□ -1.6
LIMA1-204ENST00000549064 SLC2A1P11166 492 aa5.07□□□□□ -1.6
LIMA1-204ENST00000549064 PIPP12273 146 aaPredicted RBP5.07□□□□□ -1.6
LIMA1-204ENST00000549064 PPIBP23284 216 aaKnown RBP5.07□□□□□ -1.6
LIMA1-204ENST00000549064 MDH1P40925 334 aaKnown RBP5.07□□□□□ -1.6
LIMA1-204ENST00000549064 RPS27P42677 84 aaKnown RBP5.07□□□□□ -1.6
LIMA1-204ENST00000549064 GPR4P46093 362 aa5.07□□□□□ -1.6
LIMA1-204ENST00000549064 OR3A4PP47883 348 aa5.07□□□□□ -1.6
LIMA1-204ENST00000549064 OR1E2P47887 323 aa5.07□□□□□ -1.6
LIMA1-204ENST00000549064 OR12D2P58182 307 aa5.07□□□□□ -1.6
LIMA1-204ENST00000549064 SNRPEP62304 92 aaKnown RBP5.07□□□□□ -1.6
LIMA1-204ENST00000549064 RPL31P62899 125 aaKnown RBP5.07□□□□□ -1.6
LIMA1-204ENST00000549064 STX3Q13277 289 aa5.07□□□□□ -1.6
LIMA1-204ENST00000549064 DYNC1I2Q13409 638 aaKnown RBP5.07□□□□□ -1.6
LIMA1-204ENST00000549064 CYP51A1Q16850 503 aa5.07□□□□□ -1.6
LIMA1-204ENST00000549064 ZNF626Q68DY1 528 aa5.07□□□□□ -1.6
LIMA1-204ENST00000549064 TMPRSS11FQ6ZWK6 438 aa5.07□□□□□ -1.6
LIMA1-204ENST00000549064 OAFQ86UD1 273 aa5.07□□□□□ -1.6
LIMA1-204ENST00000549064 FUNDC1Q8IVP5 155 aa5.07□□□□□ -1.6
LIMA1-204ENST00000549064 ZNF695Q8IW36 515 aa5.07□□□□□ -1.6
LIMA1-204ENST00000549064 FAM219AQ8IW50 185 aa5.07□□□□□ -1.6
LIMA1-204ENST00000549064 FOXRED2Q8IWF2 684 aa5.07□□□□□ -1.6
LIMA1-204ENST00000549064 NRMQ8IXM6 262 aa5.07□□□□□ -1.6
LIMA1-204ENST00000549064 OR6V1Q8N148 313 aa5.07□□□□□ -1.6
LIMA1-204ENST00000549064 LINC00471Q8N535 108 aa5.07□□□□□ -1.6
LIMA1-204ENST00000549064 NHLRC2Q8NBF2 726 aa5.07□□□□□ -1.6
LIMA1-204ENST00000549064 SLC26A10Q8NG04 563 aa5.07□□□□□ -1.6
LIMA1-204ENST00000549064 OR5M8Q8NGP6 311 aa5.07□□□□□ -1.6
LIMA1-204ENST00000549064 SLC26A7Q8TE54 656 aa5.07□□□□□ -1.6
LIMA1-204ENST00000549064 GATAD1Q8WUU5 269 aa5.07□□□□□ -1.6
LIMA1-204ENST00000549064 SPDL1Q96EA4 605 aa5.07□□□□□ -1.6
LIMA1-204ENST00000549064 FGF23Q9GZV9 251 aaPredicted RBP5.07□□□□□ -1.6
LIMA1-204ENST00000549064 TLNRD1Q9H1K6 362 aa5.07□□□□□ -1.6
LIMA1-204ENST00000549064 YY1AP1Q9H869 796 aa5.07□□□□□ -1.6
LIMA1-204ENST00000549064 USE1Q9NZ43 259 aa5.07□□□□□ -1.6
LIMA1-204ENST00000549064 ZKSCAN7Q9P0L1 754 aaPredicted RBP5.07□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms