RNA–Protein interactions for RNA: ENST00000546744.5

PTCH1-212, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 4,389 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-212ENST00000546744 HSPB8Q9UJY1 196 aa11.38□□□□□ -0.59
PTCH1-212ENST00000546744 PPP1R3CQ9UQK1 317 aa11.38□□□□□ -0.59
PTCH1-212ENST00000546744 YBX2Q9Y2T7 364 aaKnown RBP11.38□□□□□ -0.59
PTCH1-212ENST00000546744 PTRH2Q9Y3E5 179 aaKnown RBP11.38□□□□□ -0.59
PTCH1-212ENST00000546744 A0A1B0GU03 582 aa11.38□□□□□ -0.59
PTCH1-212ENST00000546744 ST6GAL1P15907 406 aa11.38□□□□□ -0.59
PTCH1-212ENST00000546744 LAIR2Q6ISS4 152 aa11.38□□□□□ -0.59
PTCH1-212ENST00000546744 RNASEKQ6P5S7 137 aaKnown RBP11.38□□□□□ -0.59
PTCH1-212ENST00000546744 FBXL14Q8N1E6 418 aa11.38□□□□□ -0.59
PTCH1-212ENST00000546744 C11orf42Q8N5U0 333 aa11.38□□□□□ -0.59
PTCH1-212ENST00000546744 NPEPL1Q8NDH3 523 aa11.38□□□□□ -0.59
PTCH1-212ENST00000546744 FAM173AQ9BQD7 235 aa11.38□□□□□ -0.59
PTCH1-212ENST00000546744 KCNE3Q9Y6H6 103 aa11.38□□□□□ -0.59
PTCH1-212ENST00000546744 ALOX12BO75342 701 aa11.38□□□□□ -0.59
PTCH1-212ENST00000546744 RPS4Y1P22090 263 aaKnown RBP11.38□□□□□ -0.59
PTCH1-212ENST00000546744 CLN3Q13286 438 aa11.38□□□□□ -0.59
PTCH1-212ENST00000546744 SP6Q3SY56 376 aa11.38□□□□□ -0.59
PTCH1-212ENST00000546744 GALMQ96C23 342 aa11.38□□□□□ -0.59
PTCH1-212ENST00000546744 SLC26A1Q9H2B4 701 aa11.38□□□□□ -0.59
PTCH1-212ENST00000546744 MBNL1Q9NR56 388 aaKnown RBP11.38□□□□□ -0.59
PTCH1-212ENST00000546744 ZNF236Q9UL36 1845 aa11.38□□□□□ -0.59
PTCH1-212ENST00000546744 NKX6-3A6NJ46 265 aa11.37□□□□□ -0.59
PTCH1-212ENST00000546744 H3BP45 60 aa11.37□□□□□ -0.59
PTCH1-212ENST00000546744 NHLH1Q02575 133 aa11.37□□□□□ -0.59
PTCH1-212ENST00000546744 SRYQ05066 204 aa11.37□□□□□ -0.59
PTCH1-212ENST00000546744 HOGA1Q86XE5 327 aa11.37□□□□□ -0.59
PTCH1-212ENST00000546744 FGF21Q9NSA1 209 aa11.37□□□□□ -0.59
PTCH1-212ENST00000546744 FRRS1LQ9P0K9 344 aa11.37□□□□□ -0.59
PTCH1-212ENST00000546744 OR2M5A3KFT3 312 aa11.37□□□□□ -0.59
PTCH1-212ENST00000546744 TIMM8AO60220 97 aaPredicted RBP11.37□□□□□ -0.59
PTCH1-212ENST00000546744 RPL24P83731 157 aaKnown RBP11.37□□□□□ -0.59
PTCH1-212ENST00000546744 TIAL1Q01085 375 aaKnown RBP eCLIP11.37□□□□□ -0.59
PTCH1-212ENST00000546744 PLPPR5Q32ZL2 321 aa11.37□□□□□ -0.59
PTCH1-212ENST00000546744 LAMTOR1Q6IAA8 161 aa11.37□□□□□ -0.59
PTCH1-212ENST00000546744 TMEM251Q8N6I4 163 aa11.37□□□□□ -0.59
PTCH1-212ENST00000546744 ASB5Q8WWX0 329 aa11.37□□□□□ -0.59
PTCH1-212ENST00000546744 MAP1LC3CQ9BXW4 147 aa11.37□□□□□ -0.59
PTCH1-212ENST00000546744 VN1R1Q9GZP7 353 aa11.37□□□□□ -0.59
PTCH1-212ENST00000546744 SCN10AQ9Y5Y9 1956 aa11.37□□□□□ -0.59
PTCH1-212ENST00000546744 DIRC3C9JPN6 131 aa11.37□□□□□ -0.59
PTCH1-212ENST00000546744 KIR2DS2P43631 304 aa11.37□□□□□ -0.59
PTCH1-212ENST00000546744 PPP2CBP62714 309 aa11.37□□□□□ -0.59
PTCH1-212ENST00000546744 PPP2CAP67775 309 aa11.37□□□□□ -0.59
PTCH1-212ENST00000546744 FAM219AQ8IW50 185 aa11.37□□□□□ -0.59
PTCH1-212ENST00000546744 ROBO4Q8WZ75 1007 aa11.37□□□□□ -0.59
PTCH1-212ENST00000546744 POM121L2Q96KW2 1035 aa11.37□□□□□ -0.59
PTCH1-212ENST00000546744 ADAT1Q9BUB4 502 aaKnown RBP11.37□□□□□ -0.59
PTCH1-212ENST00000546744 COMMD5Q9GZQ3 224 aa11.37□□□□□ -0.59
PTCH1-212ENST00000546744 FGF22Q9HCT0 170 aa11.37□□□□□ -0.59
PTCH1-212ENST00000546744 HCFC1R1Q9NWW0 138 aa11.37□□□□□ -0.59
PTCH1-212ENST00000546744 P4HTMQ9NXG6 502 aa11.37□□□□□ -0.59
PTCH1-212ENST00000546744 TUBD1Q9UJT1 453 aa11.37□□□□□ -0.59
PTCH1-212ENST00000546744 ZMIZ1Q9ULJ6 1067 aa11.37□□□□□ -0.59
PTCH1-212ENST00000546744 TRIP11Q15643 1979 aa11.37□□□□□ -0.59
PTCH1-212ENST00000546744 C11orf94C9JXX5 98 aa11.37□□□□□ -0.59
PTCH1-212ENST00000546744 M0R2Z0 102 aa11.37□□□□□ -0.59
PTCH1-212ENST00000546744 ATP6V0CP27449 155 aa11.37□□□□□ -0.59
PTCH1-212ENST00000546744 OTX2P32243 289 aa11.37□□□□□ -0.59
PTCH1-212ENST00000546744 KMT5CQ86Y97 462 aa11.37□□□□□ -0.59
PTCH1-212ENST00000546744 OR2A5Q96R48 311 aa11.37□□□□□ -0.59
PTCH1-212ENST00000546744 TRAV34A0A0B4J273 112 aa11.36□□□□□ -0.59
PTCH1-212ENST00000546744 AQP7P3A6NL99 342 aa11.36□□□□□ -0.59
PTCH1-212ENST00000546744 LINC01387J3KSC0 135 aa11.36□□□□□ -0.59
PTCH1-212ENST00000546744 ZFP36L2P47974 494 aaKnown RBP11.36□□□□□ -0.59
PTCH1-212ENST00000546744 DYNLT3P51808 116 aa11.36□□□□□ -0.59
PTCH1-212ENST00000546744 ZNF77Q15935 545 aa11.36□□□□□ -0.59
PTCH1-212ENST00000546744 ZBTB34Q8NCN2 500 aa11.36□□□□□ -0.59
PTCH1-212ENST00000546744 MRPL30Q8TCC3 161 aaKnown RBP11.36□□□□□ -0.59
PTCH1-212ENST00000546744 TP53RKQ96S44 253 aa11.36□□□□□ -0.59
PTCH1-212ENST00000546744 SH2D2AQ9NP31 389 aa11.36□□□□□ -0.59
PTCH1-212ENST00000546744 ICOSLGO75144 302 aa11.36□□□□□ -0.59
PTCH1-212ENST00000546744 FAHP16930 419 aa11.36□□□□□ -0.59
PTCH1-212ENST00000546744 TMEM211Q6ICI0 200 aa11.36□□□□□ -0.59
PTCH1-212ENST00000546744 OR4A47Q6IF82 309 aa11.36□□□□□ -0.59
PTCH1-212ENST00000546744 ANKRD33Q7Z3H0 272 aa11.36□□□□□ -0.59
PTCH1-212ENST00000546744 BPIFA4PQ86YQ2 179 aa11.36□□□□□ -0.59
PTCH1-212ENST00000546744 OR4A4PQ8NGN8 299 aa11.36□□□□□ -0.59
PTCH1-212ENST00000546744 APOBEC3DQ96AK3 386 aaPredicted RBP11.36□□□□□ -0.59
PTCH1-212ENST00000546744 PECRQ9BY49 303 aa11.36□□□□□ -0.59
PTCH1-212ENST00000546744 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.36□□□□□ -0.59
PTCH1-212ENST00000546744 COX7A2P2O60397 106 aa11.36□□□□□ -0.59
PTCH1-212ENST00000546744 ONECUT2O95948 504 aa11.36□□□□□ -0.59
PTCH1-212ENST00000546744 OR5G3P0C626 314 aa11.36□□□□□ -0.59
PTCH1-212ENST00000546744 CHRNB4P30926 498 aa11.36□□□□□ -0.59
PTCH1-212ENST00000546744 EIF3IQ13347 325 aaKnown RBP11.36□□□□□ -0.59
PTCH1-212ENST00000546744 DCAF12L2Q5VW00 463 aa11.36□□□□□ -0.59
PTCH1-212ENST00000546744 PTPMT1Q8WUK0 201 aaPredicted RBP11.36□□□□□ -0.59
PTCH1-212ENST00000546744 RDH5Q92781 318 aa11.36□□□□□ -0.59
PTCH1-212ENST00000546744 FGF13Q92913 245 aa11.36□□□□□ -0.59
PTCH1-212ENST00000546744 PAM16Q9Y3D7 125 aa11.36□□□□□ -0.59
PTCH1-212ENST00000546744 URB1O60287 2271 aaKnown RBP11.35□□□□□ -0.59
PTCH1-212ENST00000546744 TRBV5-5A0A0J9YX44 114 aa11.35□□□□□ -0.59
PTCH1-212ENST00000546744 TMEM30CPA0ZSE6 113 aa11.35□□□□□ -0.59
PTCH1-212ENST00000546744 CA11O75493 328 aa11.35□□□□□ -0.59
PTCH1-212ENST00000546744 RECKO95980 971 aa11.35□□□□□ -0.59
PTCH1-212ENST00000546744 TCTAP57738 103 aa11.35□□□□□ -0.59
PTCH1-212ENST00000546744 SMAD2Q15796 467 aaKnown RBP11.35□□□□□ -0.59
PTCH1-212ENST00000546744 ZIC1Q15915 447 aa11.35□□□□□ -0.59
PTCH1-212ENST00000546744 VWA1Q6PCB0 445 aa11.35□□□□□ -0.59
PTCH1-212ENST00000546744 UNQ9370/PRO34162Q6UXP9 181 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms