RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 CALHM1Q8IU99 346 aa13.68□□□□□ -0.22
LDLR-204ENST00000545707 GPR137CQ8N3F9 429 aa13.68□□□□□ -0.22
LDLR-204ENST00000545707 ISOC2Q96AB3 205 aa13.68□□□□□ -0.22
LDLR-204ENST00000545707 IP6K3Q96PC2 410 aa13.68□□□□□ -0.22
LDLR-204ENST00000545707 SH2D2AQ9NP31 389 aa13.68□□□□□ -0.22
LDLR-204ENST00000545707 COA4Q9NYJ1 87 aa13.68□□□□□ -0.22
LDLR-204ENST00000545707 HSF4Q9ULV5 492 aa13.68□□□□□ -0.22
LDLR-204ENST00000545707 NSG2Q9Y328 171 aa13.68□□□□□ -0.22
LDLR-204ENST00000545707 HEXAP06865 529 aa13.68□□□□□ -0.22
LDLR-204ENST00000545707 SNRNP70P08621 437 aaKnown RBP13.68□□□□□ -0.22
LDLR-204ENST00000545707 SPINK2P20155 84 aa13.68□□□□□ -0.22
LDLR-204ENST00000545707 B3GALT5-AS1P59052 145 aa13.68□□□□□ -0.22
LDLR-204ENST00000545707 FBXW12Q6X9E4 464 aa13.68□□□□□ -0.22
LDLR-204ENST00000545707 AAED1Q7RTV5 226 aa13.68□□□□□ -0.22
LDLR-204ENST00000545707 AGBL5Q8NDL9 886 aa13.68□□□□□ -0.22
LDLR-204ENST00000545707 MSI2Q96DH6 328 aaKnown RBP13.68□□□□□ -0.22
LDLR-204ENST00000545707 TP53RKQ96S44 253 aa13.68□□□□□ -0.22
LDLR-204ENST00000545707 EIF5A2Q9GZV4 153 aaKnown RBP13.68□□□□□ -0.22
LDLR-204ENST00000545707 TRIOBPQ9H2D6 2365 aa13.68□□□□□ -0.22
LDLR-204ENST00000545707 PLEKHA2Q9HB19 425 aa13.68□□□□□ -0.22
LDLR-204ENST00000545707 PATE3B3GLJ2 98 aa13.67□□□□□ -0.22
LDLR-204ENST00000545707 TERTO14746 1132 aaKnown RBP13.67□□□□□ -0.22
LDLR-204ENST00000545707 TRAPPC6AO75865 159 aa13.67□□□□□ -0.22
LDLR-204ENST00000545707 AADACP22760 399 aa13.67□□□□□ -0.22
LDLR-204ENST00000545707 DTYMKP23919 212 aa13.67□□□□□ -0.22
LDLR-204ENST00000545707 RAC3P60763 192 aa13.67□□□□□ -0.22
LDLR-204ENST00000545707 EXT1Q16394 746 aa13.67□□□□□ -0.22
LDLR-204ENST00000545707 PLCXD3Q63HM9 321 aa13.67□□□□□ -0.22
LDLR-204ENST00000545707 LIAT1Q6ZQX7 453 aa13.67□□□□□ -0.22
LDLR-204ENST00000545707 SUMF1Q8NBK3 374 aa13.67□□□□□ -0.22
LDLR-204ENST00000545707 WNT5BQ9H1J7 359 aa13.67□□□□□ -0.22
LDLR-204ENST00000545707 ZNF442Q9H7R0 627 aa13.67□□□□□ -0.22
LDLR-204ENST00000545707 FAM212BQ9NTI7 297 aaPredicted RBP13.67□□□□□ -0.22
LDLR-204ENST00000545707 SLC33A1O00400 549 aaPredicted RBP13.66□□□□□ -0.22
LDLR-204ENST00000545707 OR7C1O76099 320 aaPredicted RBP13.66□□□□□ -0.22
LDLR-204ENST00000545707 PRH1P02810 166 aa13.66□□□□□ -0.22
LDLR-204ENST00000545707 SNCAP37840 140 aa13.66□□□□□ -0.22
LDLR-204ENST00000545707 CAMLGP49069 296 aa13.66□□□□□ -0.22
LDLR-204ENST00000545707 MLF1P58340 268 aa13.66□□□□□ -0.22
LDLR-204ENST00000545707 SNRPEP62304 92 aaKnown RBP13.66□□□□□ -0.22
LDLR-204ENST00000545707 HABP2Q14520 560 aaPredicted RBP13.66□□□□□ -0.22
LDLR-204ENST00000545707 WIPI1Q5MNZ9 446 aaPredicted RBP13.66□□□□□ -0.22
LDLR-204ENST00000545707 GGNQ86UU5 652 aa13.66□□□□□ -0.22
LDLR-204ENST00000545707 SKA3Q8IX90 412 aa13.66□□□□□ -0.22
LDLR-204ENST00000545707 INTS12Q96CB8 462 aaKnown RBP13.66□□□□□ -0.22
LDLR-204ENST00000545707 GALNT14Q96FL9 552 aa13.66□□□□□ -0.22
LDLR-204ENST00000545707 C18orf12Q96KH6 178 aa13.66□□□□□ -0.22
LDLR-204ENST00000545707 BCO1Q9HAY6 547 aa13.66□□□□□ -0.22
LDLR-204ENST00000545707 RCL1Q9Y2P8 373 aaKnown RBP13.66□□□□□ -0.22
LDLR-204ENST00000545707 OR6C6A6NF89 314 aa13.66□□□□□ -0.22
LDLR-204ENST00000545707 ZNF716A6NP11 495 aa13.66□□□□□ -0.22
LDLR-204ENST00000545707 CST2P09228 141 aa13.66□□□□□ -0.22
LDLR-204ENST00000545707 CBR1P16152 277 aa13.66□□□□□ -0.22
LDLR-204ENST00000545707 IL11RAQ14626 422 aa13.66□□□□□ -0.22
LDLR-204ENST00000545707 GUK1Q16774 197 aa13.66□□□□□ -0.22
LDLR-204ENST00000545707 C9orf135Q5VTT2 229 aa13.66□□□□□ -0.22
LDLR-204ENST00000545707 LHFPL2Q6ZUX7 228 aa13.66□□□□□ -0.22
LDLR-204ENST00000545707 SLC35G3Q8N808 338 aa13.66□□□□□ -0.22
LDLR-204ENST00000545707 LYPD6BQ8NI32 183 aa13.66□□□□□ -0.22
LDLR-204ENST00000545707 ZNF845Q96IR2 970 aaPredicted RBP13.66□□□□□ -0.22
LDLR-204ENST00000545707 FOXB1Q99853 325 aa13.66□□□□□ -0.22
LDLR-204ENST00000545707 SPACA1Q9HBV2 294 aa13.66□□□□□ -0.22
LDLR-204ENST00000545707 SMCO4Q9NRQ5 59 aa13.66□□□□□ -0.22
LDLR-204ENST00000545707 STARD10Q9Y365 291 aa13.66□□□□□ -0.22
LDLR-204ENST00000545707 TIMM10BQ9Y5J6 103 aa13.66□□□□□ -0.22
LDLR-204ENST00000545707 C9J4A7 227 aa13.65□□□□□ -0.22
LDLR-204ENST00000545707 H7C1Q1 480 aa13.65□□□□□ -0.22
LDLR-204ENST00000545707 DANCRP0C864 163 aa13.65□□□□□ -0.22
LDLR-204ENST00000545707 CLDN15P56746 228 aa13.65□□□□□ -0.22
LDLR-204ENST00000545707 DAZAP2Q15038 168 aaPredicted RBP13.65□□□□□ -0.22
LDLR-204ENST00000545707 AWAT1Q58HT5 328 aa13.65□□□□□ -0.22
LDLR-204ENST00000545707 M1APQ8TC57 530 aa13.65□□□□□ -0.22
LDLR-204ENST00000545707 ABHD3Q8WU67 409 aa13.65□□□□□ -0.22
LDLR-204ENST00000545707 SFT2D1Q8WV19 159 aa13.65□□□□□ -0.22
LDLR-204ENST00000545707 CLDN23Q96B33 292 aa13.65□□□□□ -0.22
LDLR-204ENST00000545707 HS3ST6Q96QI5 342 aa13.65□□□□□ -0.22
LDLR-204ENST00000545707 SCRT1Q9BWW7 348 aa13.65□□□□□ -0.22
LDLR-204ENST00000545707 OR2H1Q9GZK4 316 aa13.65□□□□□ -0.22
LDLR-204ENST00000545707 ZNF286AQ9HBT8 521 aa13.65□□□□□ -0.22
LDLR-204ENST00000545707 FBXO7Q9Y3I1 522 aa13.65□□□□□ -0.22
LDLR-204ENST00000545707 SIT1Q9Y3P8 196 aa13.65□□□□□ -0.22
LDLR-204ENST00000545707 hCG_38984A0A1B0GV85 526 aa13.65□□□□□ -0.22
LDLR-204ENST00000545707 M0R036 132 aa13.65□□□□□ -0.22
LDLR-204ENST00000545707 CCL2P13500 99 aa13.65□□□□□ -0.22
LDLR-204ENST00000545707 TMEM42Q69YG0 159 aa13.65□□□□□ -0.22
LDLR-204ENST00000545707 ASCL4Q6XD76 172 aa13.65□□□□□ -0.22
LDLR-204ENST00000545707 SLC25A26Q70HW3 274 aa13.65□□□□□ -0.22
LDLR-204ENST00000545707 DMBX1Q8NFW5 382 aa13.65□□□□□ -0.22
LDLR-204ENST00000545707 OR2Y1Q8NGV0 311 aa13.65□□□□□ -0.22
LDLR-204ENST00000545707 CCDC163A0A0D9SF12 145 aa13.64□□□□□ -0.23
LDLR-204ENST00000545707 TNRC18O15417 2968 aaPredicted RBP13.64□□□□□ -0.23
LDLR-204ENST00000545707 GPR137BO60478 399 aa13.64□□□□□ -0.23
LDLR-204ENST00000545707 EDN3P14138 238 aa13.64□□□□□ -0.23
LDLR-204ENST00000545707 TCN2P20062 427 aa13.64□□□□□ -0.23
LDLR-204ENST00000545707 CCNOP22674 350 aa13.64□□□□□ -0.23
LDLR-204ENST00000545707 OMGP23515 440 aa13.64□□□□□ -0.23
LDLR-204ENST00000545707 DUSP1P28562 367 aa13.64□□□□□ -0.23
LDLR-204ENST00000545707 MALLQ13021 153 aa13.64□□□□□ -0.23
LDLR-204ENST00000545707 CLINT1Q14677 625 aa13.64□□□□□ -0.23
LDLR-204ENST00000545707 TMEM182Q6ZP80 229 aaPredicted RBP13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms