RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 MRPL41Q8IXM3 137 aaKnown RBP10.23□□□□□ -0.77
USP28-212ENST00000544750 OR5A2Q8NGI9 324 aa10.23□□□□□ -0.77
USP28-212ENST00000544750 TRUB1Q8WWH5 349 aaKnown RBP10.23□□□□□ -0.77
USP28-212ENST00000544750 ZNF488Q96MN9 340 aa10.23□□□□□ -0.77
USP28-212ENST00000544750 HIST1H2AAQ96QV6 131 aa10.23□□□□□ -0.77
USP28-212ENST00000544750 TBX5Q99593 518 aa10.23□□□□□ -0.77
USP28-212ENST00000544750 MROQ9BYG7 248 aa10.23□□□□□ -0.77
USP28-212ENST00000544750 GPR61Q9BZJ8 451 aa10.23□□□□□ -0.77
USP28-212ENST00000544750 A0A0U1RQV5 110 aa10.22□□□□□ -0.77
USP28-212ENST00000544750 TMEM269A0A1B0GVZ9 245 aa10.22□□□□□ -0.77
USP28-212ENST00000544750 A0A1W2PQL4 384 aaPredicted RBP10.22□□□□□ -0.77
USP28-212ENST00000544750 ACOD1A6NK06 481 aa10.22□□□□□ -0.77
USP28-212ENST00000544750 ZNF670-ZNF695F2Z2N8 137 aa10.22□□□□□ -0.77
USP28-212ENST00000544750 J3QRE1 110 aa10.22□□□□□ -0.77
USP28-212ENST00000544750 K7N7A8 449 aa10.22□□□□□ -0.77
USP28-212ENST00000544750 TTRP02766 147 aa10.22□□□□□ -0.77
USP28-212ENST00000544750 ZNF728P0DKX0 622 aa10.22□□□□□ -0.77
USP28-212ENST00000544750 IGHV1-8P0DP01 117 aa10.22□□□□□ -0.77
USP28-212ENST00000544750 RIDAP52758 137 aaKnown RBP10.22□□□□□ -0.77
USP28-212ENST00000544750 ZNF85Q03923 595 aa10.22□□□□□ -0.77
USP28-212ENST00000544750 TMED1Q13445 227 aa10.22□□□□□ -0.77
USP28-212ENST00000544750 RCN1Q15293 331 aa10.22□□□□□ -0.77
USP28-212ENST00000544750 MINOS1Q5TGZ0 78 aa10.22□□□□□ -0.77
USP28-212ENST00000544750 PLEKHG7Q6ZR37 379 aa10.22□□□□□ -0.77
USP28-212ENST00000544750 TCF23Q7RTU1 214 aa10.22□□□□□ -0.77
USP28-212ENST00000544750 C16orf82Q7Z2V1 217 aa10.22□□□□□ -0.77
USP28-212ENST00000544750 ENTHD1Q8IYW4 607 aa10.22□□□□□ -0.77
USP28-212ENST00000544750 STMN2Q93045 179 aa10.22□□□□□ -0.77
USP28-212ENST00000544750 RNF166Q96A37 237 aaPredicted RBP10.22□□□□□ -0.77
USP28-212ENST00000544750 PBOV1Q9GZY1 135 aa10.22□□□□□ -0.77
USP28-212ENST00000544750 HES4Q9HCC6 221 aa10.22□□□□□ -0.77
USP28-212ENST00000544750 FAM118AQ9NWS6 357 aa10.22□□□□□ -0.77
USP28-212ENST00000544750 IMPAD1Q9NX62 359 aa10.22□□□□□ -0.77
USP28-212ENST00000544750 NUFIP1Q9UHK0 495 aaKnown RBP10.22□□□□□ -0.77
USP28-212ENST00000544750 IKZF2Q9UKS7 526 aa10.22□□□□□ -0.77
USP28-212ENST00000544750 HILPDAQ9Y5L2 63 aa10.22□□□□□ -0.77
USP28-212ENST00000544750 GMPPBQ9Y5P6 360 aa10.22□□□□□ -0.77
USP28-212ENST00000544750 MINOS1-NBL1R4GNA1 71 aa10.22□□□□□ -0.77
USP28-212ENST00000544750 SLC16A6O15403 523 aa10.21□□□□□ -0.77
USP28-212ENST00000544750 ZNF737O75373 536 aa10.21□□□□□ -0.77
USP28-212ENST00000544750 CLIC3O95833 236 aa10.21□□□□□ -0.77
USP28-212ENST00000544750 AMY1AP04745 511 aa10.21□□□□□ -0.77
USP28-212ENST00000544750 AMY2AP04746 511 aa10.21□□□□□ -0.77
USP28-212ENST00000544750 OR2T7P0C7T2 308 aa10.21□□□□□ -0.77
USP28-212ENST00000544750 PIPP12273 146 aaPredicted RBP10.21□□□□□ -0.77
USP28-212ENST00000544750 PEX2P28328 305 aa10.21□□□□□ -0.77
USP28-212ENST00000544750 MAP2K3P46734 347 aa10.21□□□□□ -0.77
USP28-212ENST00000544750 OR12D2P58182 307 aa10.21□□□□□ -0.77
USP28-212ENST00000544750 ISL1P61371 349 aa10.21□□□□□ -0.77
USP28-212ENST00000544750 SLC34A1Q06495 639 aa10.21□□□□□ -0.77
USP28-212ENST00000544750 GABPB1Q06547 395 aaPredicted RBP10.21□□□□□ -0.77
USP28-212ENST00000544750 ZNF829Q3KNS6 432 aaPredicted RBP10.21□□□□□ -0.77
USP28-212ENST00000544750 LPCAT4Q643R3 524 aa10.21□□□□□ -0.77
USP28-212ENST00000544750 OR4X2Q8NGF9 303 aa10.21□□□□□ -0.77
USP28-212ENST00000544750 DPF1Q92782 380 aa10.21□□□□□ -0.77
USP28-212ENST00000544750 RFKQ969G6 155 aa10.21□□□□□ -0.77
USP28-212ENST00000544750 ITFG2Q969R8 447 aa10.21□□□□□ -0.77
USP28-212ENST00000544750 NRIP2Q9BQI9 281 aa10.21□□□□□ -0.77
USP28-212ENST00000544750 LSM4Q9Y4Z0 139 aaKnown RBP10.21□□□□□ -0.77
USP28-212ENST00000544750 R4GMQ9 66 aa10.21□□□□□ -0.77
USP28-212ENST00000544750 CSMD3Q7Z407 3707 aa10.21□□□□□ -0.78
USP28-212ENST00000544750 STARD9Q9P2P6 4700 aa10.21□□□□□ -0.78
USP28-212ENST00000544750 LOC100130705A0A1B0GUX0 176 aa10.2□□□□□ -0.78
USP28-212ENST00000544750 LOC110117498-PIK3R3F6TDL0 507 aa10.2□□□□□ -0.78
USP28-212ENST00000544750 H0YHG0 523 aa10.2□□□□□ -0.78
USP28-212ENST00000544750 LPLP06858 475 aa10.2□□□□□ -0.78
USP28-212ENST00000544750 CHRM2P08172 466 aa10.2□□□□□ -0.78
USP28-212ENST00000544750 CCDC159P0C7I6 412 aa10.2□□□□□ -0.78
USP28-212ENST00000544750 THBS3P49746 956 aa10.2□□□□□ -0.78
USP28-212ENST00000544750 ERVK11-1P61568 191 aa10.2□□□□□ -0.78
USP28-212ENST00000544750 Q6ZSR3 168 aa10.2□□□□□ -0.78
USP28-212ENST00000544750 OR10H4Q8NGA5 316 aa10.2□□□□□ -0.78
USP28-212ENST00000544750 RHOXF1Q8NHV9 184 aa10.2□□□□□ -0.78
USP28-212ENST00000544750 OR51E1Q8TCB6 317 aa10.2□□□□□ -0.78
USP28-212ENST00000544750 APH1BQ8WW43 257 aa10.2□□□□□ -0.78
USP28-212ENST00000544750 RNFT2Q96EX2 444 aa10.2□□□□□ -0.78
USP28-212ENST00000544750 RDH12Q96NR8 316 aa10.2□□□□□ -0.78
USP28-212ENST00000544750 LIN7BQ9HAP6 207 aa10.2□□□□□ -0.78
USP28-212ENST00000544750 GPR84Q9NQS5 396 aa10.2□□□□□ -0.78
USP28-212ENST00000544750 SMPD3Q9NY59 655 aaPredicted RBP10.2□□□□□ -0.78
USP28-212ENST00000544750 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP10.2□□□□□ -0.78
USP28-212ENST00000544750 IGHV2-26A0A0B4J1V2 119 aa10.19□□□□□ -0.78
USP28-212ENST00000544750 A0A1B0GTI1 187 aa10.19□□□□□ -0.78
USP28-212ENST00000544750 MEX3AA1L020 520 aaKnown RBP10.19□□□□□ -0.78
USP28-212ENST00000544750 J3QT63 122 aa10.19□□□□□ -0.78
USP28-212ENST00000544750 ATP6V1B1P15313 513 aa10.19□□□□□ -0.78
USP28-212ENST00000544750 MPZP25189 248 aa10.19□□□□□ -0.78
USP28-212ENST00000544750 ACTA2P62736 377 aa10.19□□□□□ -0.78
USP28-212ENST00000544750 ACTG2P63267 376 aa10.19□□□□□ -0.78
USP28-212ENST00000544750 ACTC1P68032 377 aa10.19□□□□□ -0.78
USP28-212ENST00000544750 ACTA1P68133 377 aa10.19□□□□□ -0.78
USP28-212ENST00000544750 ZNF91Q05481 1191 aa10.19□□□□□ -0.78
USP28-212ENST00000544750 DYNC1I2Q13409 638 aaKnown RBP10.19□□□□□ -0.78
USP28-212ENST00000544750 LRRC36Q1X8D7 754 aa10.19□□□□□ -0.78
USP28-212ENST00000544750 ABCA11PQ4W5N1 156 aa10.19□□□□□ -0.78
USP28-212ENST00000544750 MEDAGQ5VYS4 303 aa10.19□□□□□ -0.78
USP28-212ENST00000544750 TMEM42Q69YG0 159 aa10.19□□□□□ -0.78
USP28-212ENST00000544750 MOB3CQ70IA8 216 aa10.19□□□□□ -0.78
USP28-212ENST00000544750 CATSPERDQ86XM0 798 aa10.19□□□□□ -0.78
USP28-212ENST00000544750 ELMOD2Q8IZ81 293 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms