RNA–Protein interactions for RNA: ENST00000544669.5

CPSF7-223, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 1,800 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-223	ENST00000544669	ZNF266	Q14584	549 aa		11.3	□□□□□ -0.6
CPSF7-223	ENST00000544669	GUCA2B	Q16661	112 aa		11.3	□□□□□ -0.6
CPSF7-223	ENST00000544669	FAM74A3	Q4VXF1	159 aa		11.3	□□□□□ -0.6
CPSF7-223	ENST00000544669	SLC22A25	Q6T423	547 aa		11.3	□□□□□ -0.6
CPSF7-223	ENST00000544669	FBXW12	Q6X9E4	464 aa		11.3	□□□□□ -0.6
CPSF7-223	ENST00000544669	LDLRAD3	Q86YD5	345 aa		11.3	□□□□□ -0.6
CPSF7-223	ENST00000544669	OR4A4P	Q8NGN8	299 aa		11.3	□□□□□ -0.6
CPSF7-223	ENST00000544669	PIGC	Q92535	297 aa		11.3	□□□□□ -0.6
CPSF7-223	ENST00000544669	TOMM40L	Q969M1	308 aa		11.3	□□□□□ -0.6
CPSF7-223	ENST00000544669	HIST1H2AA	Q96QV6	131 aa		11.3	□□□□□ -0.6
CPSF7-223	ENST00000544669	TAAR9	Q96RI9	348 aa		11.3	□□□□□ -0.6
CPSF7-223	ENST00000544669	GINS3	Q9BRX5	216 aa		11.3	□□□□□ -0.6
CPSF7-223	ENST00000544669	SLC25A31	Q9H0C2	315 aa		11.3	□□□□□ -0.6
CPSF7-223	ENST00000544669	SMCO4	Q9NRQ5	59 aa		11.3	□□□□□ -0.6
CPSF7-223	ENST00000544669	LRP5L	A4QPB2	252 aa		11.29	□□□□□ -0.6
CPSF7-223	ENST00000544669	GEMIN2	O14893	280 aa	Known RBP	11.29	□□□□□ -0.6
CPSF7-223	ENST00000544669	NDUFA2	O43678	99 aa		11.29	□□□□□ -0.6
CPSF7-223	ENST00000544669	MMP7	P09237	267 aa	Predicted RBP	11.29	□□□□□ -0.6
CPSF7-223	ENST00000544669	OR5AC1	P0C628	307 aa		11.29	□□□□□ -0.6
CPSF7-223	ENST00000544669	ANOS1	P23352	680 aa		11.29	□□□□□ -0.6
CPSF7-223	ENST00000544669	OTX2	P32243	289 aa		11.29	□□□□□ -0.6
CPSF7-223	ENST00000544669	GFRA1	P56159	465 aa		11.29	□□□□□ -0.6
CPSF7-223	ENST00000544669	TRIM61	Q5EBN2	209 aa		11.29	□□□□□ -0.6
CPSF7-223	ENST00000544669	FOXRED2	Q8IWF2	684 aa		11.29	□□□□□ -0.6
CPSF7-223	ENST00000544669	ESX1	Q8N693	406 aa		11.29	□□□□□ -0.6
CPSF7-223	ENST00000544669	ZNF565	Q8N9K5	539 aa		11.29	□□□□□ -0.6
CPSF7-223	ENST00000544669	AKR7L	Q8NHP1	331 aa		11.29	□□□□□ -0.6
CPSF7-223	ENST00000544669	MRPL24	Q96A35	216 aa	Known RBP	11.29	□□□□□ -0.6
CPSF7-223	ENST00000544669	APOBEC3D	Q96AK3	386 aa	Predicted RBP	11.29	□□□□□ -0.6
CPSF7-223	ENST00000544669	ZNF837	Q96EG3	531 aa	Predicted RBP	11.29	□□□□□ -0.6
CPSF7-223	ENST00000544669	GPR87	Q9BY21	358 aa		11.29	□□□□□ -0.6
CPSF7-223	ENST00000544669	TLNRD1	Q9H1K6	362 aa		11.29	□□□□□ -0.6
CPSF7-223	ENST00000544669	BIN3	Q9NQY0	253 aa		11.29	□□□□□ -0.6
CPSF7-223	ENST00000544669	AMDHD2	Q9Y303	409 aa		11.29	□□□□□ -0.6
CPSF7-223	ENST00000544669	ZNF175	Q9Y473	711 aa		11.29	□□□□□ -0.6
CPSF7-223	ENST00000544669	ASXL3	Q9C0F0	2248 aa		11.29	□□□□□ -0.6
CPSF7-223	ENST00000544669	IGKV1-27	A0A075B6S5	117 aa		11.28	□□□□□ -0.6
CPSF7-223	ENST00000544669	C19orf67	A6NJJ6	358 aa		11.28	□□□□□ -0.6
CPSF7-223	ENST00000544669	LRRC3C	A6NJW4	275 aa		11.28	□□□□□ -0.6
CPSF7-223	ENST00000544669	UMAD1	C9J7I0	102 aa		11.28	□□□□□ -0.6
CPSF7-223	ENST00000544669	KCNAB3	O43448	404 aa		11.28	□□□□□ -0.6
CPSF7-223	ENST00000544669	MBP	P02686	304 aa	Predicted RBP	11.28	□□□□□ -0.6
CPSF7-223	ENST00000544669	DANCR	P0C864	163 aa		11.28	□□□□□ -0.6
CPSF7-223	ENST00000544669	OPRM1	P35372	400 aa		11.28	□□□□□ -0.6
CPSF7-223	ENST00000544669	UCP2	P55851	309 aa		11.28	□□□□□ -0.6
CPSF7-223	ENST00000544669	ZNF92	Q03936	586 aa		11.28	□□□□□ -0.6
CPSF7-223	ENST00000544669	OR8G5	Q8NG78	346 aa		11.28	□□□□□ -0.6
CPSF7-223	ENST00000544669	IL22RA2	Q969J5	263 aa		11.28	□□□□□ -0.6
CPSF7-223	ENST00000544669	MARS2	Q96GW9	593 aa	Known RBP	11.28	□□□□□ -0.6
CPSF7-223	ENST00000544669	KIRREL1	Q96J84	757 aa		11.28	□□□□□ -0.6
CPSF7-223	ENST00000544669	IP6K3	Q96PC2	410 aa		11.28	□□□□□ -0.6
CPSF7-223	ENST00000544669	ALKBH3	Q96Q83	286 aa	Predicted RBP	11.28	□□□□□ -0.6
CPSF7-223	ENST00000544669	UNKL	Q9H9P5	680 aa	Known RBP	11.28	□□□□□ -0.6
CPSF7-223	ENST00000544669	ARID1B	Q8NFD5	2236 aa	Predicted RBP	11.28	□□□□□ -0.6
CPSF7-223	ENST00000544669	C3orf85	A0A1B0GTC6	90 aa		11.28	□□□□□ -0.6
CPSF7-223	ENST00000544669	BTBD17	A6NE02	478 aa		11.28	□□□□□ -0.6
CPSF7-223	ENST00000544669	ZNF724	A8MTY0	619 aa		11.28	□□□□□ -0.6
CPSF7-223	ENST00000544669	ZNF587B	E7ETH6	402 aa		11.28	□□□□□ -0.6
CPSF7-223	ENST00000544669	MPPED1	O15442	326 aa		11.28	□□□□□ -0.6
CPSF7-223	ENST00000544669	HSPA12A	O43301	675 aa		11.28	□□□□□ -0.6
CPSF7-223	ENST00000544669	SCGB1D2	O95969	90 aa		11.28	□□□□□ -0.6
CPSF7-223	ENST00000544669	RFC3	P40938	356 aa		11.28	□□□□□ -0.6
CPSF7-223	ENST00000544669	HOXA1	P49639	335 aa	Predicted RBP	11.28	□□□□□ -0.6
CPSF7-223	ENST00000544669	RRAD	P55042	308 aa		11.28	□□□□□ -0.6
CPSF7-223	ENST00000544669	PLP2	Q04941	152 aa		11.28	□□□□□ -0.6
CPSF7-223	ENST00000544669	WIPI1	Q5MNZ9	446 aa	Predicted RBP	11.28	□□□□□ -0.6
CPSF7-223	ENST00000544669	ZNF468	Q5VIY5	522 aa	Predicted RBP	11.28	□□□□□ -0.6
CPSF7-223	ENST00000544669		Q6ZRG5	221 aa		11.28	□□□□□ -0.6
CPSF7-223	ENST00000544669	CMTM1	Q8IZ96	169 aa		11.28	□□□□□ -0.6
CPSF7-223	ENST00000544669	ZNF611	Q8N823	705 aa		11.28	□□□□□ -0.6
CPSF7-223	ENST00000544669	BOLL	Q8N9W6	283 aa	Known RBP	11.28	□□□□□ -0.6
CPSF7-223	ENST00000544669	OR5A2	Q8NGI9	324 aa		11.28	□□□□□ -0.6
CPSF7-223	ENST00000544669	MSI2	Q96DH6	328 aa	Known RBP	11.28	□□□□□ -0.6
CPSF7-223	ENST00000544669	HDHD3	Q9BSH5	251 aa	Predicted RBP	11.28	□□□□□ -0.6
CPSF7-223	ENST00000544669	REPIN1	Q9BWE0	567 aa	Known RBP	11.28	□□□□□ -0.6
CPSF7-223	ENST00000544669	PRR13	Q9NZ81	148 aa		11.28	□□□□□ -0.6
CPSF7-223	ENST00000544669		A0A1B0GW64	132 aa		11.27	□□□□□ -0.61
CPSF7-223	ENST00000544669	CCDC85C	A6NKD9	419 aa		11.27	□□□□□ -0.61
CPSF7-223	ENST00000544669	PHF1	O43189	567 aa	Predicted RBP	11.27	□□□□□ -0.61
CPSF7-223	ENST00000544669	OR7C1	O76099	320 aa	Predicted RBP	11.27	□□□□□ -0.61
CPSF7-223	ENST00000544669	PPY	P01298	95 aa		11.27	□□□□□ -0.61
CPSF7-223	ENST00000544669	SFTA3	P0C7M3	94 aa		11.27	□□□□□ -0.61
CPSF7-223	ENST00000544669	SPP1	P10451	314 aa		11.27	□□□□□ -0.61
CPSF7-223	ENST00000544669	MUC1	P15941	1255 aa	Predicted RBP	11.27	□□□□□ -0.61
CPSF7-223	ENST00000544669	ADCYAP1	P18509	176 aa		11.27	□□□□□ -0.61
CPSF7-223	ENST00000544669	NME2	P22392	152 aa		11.27	□□□□□ -0.61
CPSF7-223	ENST00000544669	LPAR6	P43657	344 aa		11.27	□□□□□ -0.61
CPSF7-223	ENST00000544669	FXYD4	P59646	89 aa		11.27	□□□□□ -0.61
CPSF7-223	ENST00000544669	FGF12	P61328	243 aa		11.27	□□□□□ -0.61
CPSF7-223	ENST00000544669	RNPS1	Q15287	305 aa	Known RBP	11.27	□□□□□ -0.61
CPSF7-223	ENST00000544669	HFE	Q30201	348 aa		11.27	□□□□□ -0.61
CPSF7-223	ENST00000544669	CEACAM21	Q3KPI0	293 aa		11.27	□□□□□ -0.61
CPSF7-223	ENST00000544669	AVPI1	Q5T686	147 aa		11.27	□□□□□ -0.61
CPSF7-223	ENST00000544669	TMEM164	Q5U3C3	297 aa		11.27	□□□□□ -0.61
CPSF7-223	ENST00000544669	ABHD17B	Q5VST6	288 aa		11.27	□□□□□ -0.61
CPSF7-223	ENST00000544669	MRPL21	Q7Z2W9	205 aa	Known RBP	11.27	□□□□□ -0.61
CPSF7-223	ENST00000544669	C15orf54	Q8N8G6	183 aa		11.27	□□□□□ -0.61
CPSF7-223	ENST00000544669	GLYATL2	Q8WU03	294 aa		11.27	□□□□□ -0.61
CPSF7-223	ENST00000544669	TMEM56	Q96MV1	263 aa		11.27	□□□□□ -0.61
CPSF7-223	ENST00000544669	PAPOLG	Q9BWT3	736 aa	Known RBP	11.27	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 113.4 ms