RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 KLHDC2Q9Y2U9 406 aa4.33□□□□□ -1.72
CLIP1-217ENST00000543205 STARD10Q9Y365 291 aa4.33□□□□□ -1.72
CLIP1-217ENST00000543205 CRYBG3Q68DQ2 2970 aa4.33□□□□□ -1.72
CLIP1-217ENST00000543205 PRR14LQ5THK1 2151 aa4.33□□□□□ -1.72
CLIP1-217ENST00000543205 H3BSA7 217 aa4.33□□□□□ -1.72
CLIP1-217ENST00000543205 NDUFS6O75380 124 aaKnown RBP4.33□□□□□ -1.72
CLIP1-217ENST00000543205 WBP4O75554 376 aaKnown RBP4.33□□□□□ -1.72
CLIP1-217ENST00000543205 ECDO95905 644 aaPredicted RBP4.33□□□□□ -1.72
CLIP1-217ENST00000543205 CD8AP01732 235 aa4.33□□□□□ -1.72
CLIP1-217ENST00000543205 ACAA1P09110 424 aaPredicted RBP4.33□□□□□ -1.72
CLIP1-217ENST00000543205 SLC2A1P11166 492 aa4.33□□□□□ -1.72
CLIP1-217ENST00000543205 ZNF250P15622 560 aa4.33□□□□□ -1.72
CLIP1-217ENST00000543205 PRKACAP17612 351 aa4.33□□□□□ -1.72
CLIP1-217ENST00000543205 HOXA5P20719 270 aa4.33□□□□□ -1.72
CLIP1-217ENST00000543205 EVX1P49640 407 aa4.33□□□□□ -1.72
CLIP1-217ENST00000543205 RIDAP52758 137 aaKnown RBP4.33□□□□□ -1.72
CLIP1-217ENST00000543205 KLF3P57682 345 aaPredicted RBP4.33□□□□□ -1.72
CLIP1-217ENST00000543205 SEC61GP60059 68 aa4.33□□□□□ -1.72
CLIP1-217ENST00000543205 RAB40BQ12829 278 aa4.33□□□□□ -1.72
CLIP1-217ENST00000543205 EFNB3Q15768 340 aa4.33□□□□□ -1.72
CLIP1-217ENST00000543205 SMUG1Q53HV7 270 aa4.33□□□□□ -1.72
CLIP1-217ENST00000543205 PLAC9Q5JTB6 97 aa4.33□□□□□ -1.72
CLIP1-217ENST00000543205 FAM159AQ6UWV7 190 aa4.33□□□□□ -1.72
CLIP1-217ENST00000543205 PQLC2Q6ZP29 291 aa4.33□□□□□ -1.72
CLIP1-217ENST00000543205 RFPL4BQ6ZWI9 263 aa4.33□□□□□ -1.72
CLIP1-217ENST00000543205 FAM57BQ71RH2 274 aa4.33□□□□□ -1.72
CLIP1-217ENST00000543205 DTX2Q86UW9 622 aa4.33□□□□□ -1.72
CLIP1-217ENST00000543205 NAA40Q86UY6 237 aa4.33□□□□□ -1.72
CLIP1-217ENST00000543205 YIPF7Q8N8F6 280 aa4.33□□□□□ -1.72
CLIP1-217ENST00000543205 KLF14Q8TD94 323 aaPredicted RBP4.33□□□□□ -1.72
CLIP1-217ENST00000543205 EMG1Q92979 244 aaKnown RBP4.33□□□□□ -1.72
CLIP1-217ENST00000543205 HAVCR1Q96D42 359 aa4.33□□□□□ -1.72
CLIP1-217ENST00000543205 CMBLQ96DG6 245 aa4.33□□□□□ -1.72
CLIP1-217ENST00000543205 OR8B4Q96RC9 309 aa4.33□□□□□ -1.72
CLIP1-217ENST00000543205 DOK1Q99704 481 aa4.33□□□□□ -1.72
CLIP1-217ENST00000543205 TRAF4Q9BUZ4 470 aaPredicted RBP4.33□□□□□ -1.72
CLIP1-217ENST00000543205 Q9H521 79 aa4.33□□□□□ -1.72
CLIP1-217ENST00000543205 AUNIPQ9H7T9 357 aa4.33□□□□□ -1.72
CLIP1-217ENST00000543205 DYNLRB1Q9NP97 96 aa4.33□□□□□ -1.72
CLIP1-217ENST00000543205 PTTG3PQ9NZH4 202 aa4.33□□□□□ -1.72
CLIP1-217ENST00000543205 TBC1D24Q9ULP9 559 aa4.33□□□□□ -1.72
CLIP1-217ENST00000543205 RAB26Q9ULW5 256 aa4.33□□□□□ -1.72
CLIP1-217ENST00000543205 EXOGQ9Y2C4 368 aaKnown RBP4.33□□□□□ -1.72
CLIP1-217ENST00000543205 LRP12Q9Y561 859 aa4.33□□□□□ -1.72
CLIP1-217ENST00000543205 A3GALT2U3KPV4 340 aa4.33□□□□□ -1.72
CLIP1-217ENST00000543205 TMEM269A0A1B0GVZ9 245 aa4.32□□□□□ -1.72
CLIP1-217ENST00000543205 EFCAB10A6NFE3 127 aa4.32□□□□□ -1.72
CLIP1-217ENST00000543205 METTL15A6NJ78 407 aa4.32□□□□□ -1.72
CLIP1-217ENST00000543205 TIMM8AO60220 97 aaPredicted RBP4.32□□□□□ -1.72
CLIP1-217ENST00000543205 FAM20BO75063 409 aa4.32□□□□□ -1.72
CLIP1-217ENST00000543205 SULT1C4O75897 302 aa4.32□□□□□ -1.72
CLIP1-217ENST00000543205 ERCC1P07992 297 aaPredicted RBP4.32□□□□□ -1.72
CLIP1-217ENST00000543205 TACSTD2P09758 323 aa4.32□□□□□ -1.72
CLIP1-217ENST00000543205 SELEP16581 610 aa4.32□□□□□ -1.72
CLIP1-217ENST00000543205 GATA3P23771 443 aa4.32□□□□□ -1.72
CLIP1-217ENST00000543205 OTX1P32242 354 aaPredicted RBP4.32□□□□□ -1.72
CLIP1-217ENST00000543205 DCTDP32321 178 aa4.32□□□□□ -1.72
CLIP1-217ENST00000543205 MPV17P39210 176 aa4.32□□□□□ -1.72
CLIP1-217ENST00000543205 ALDH3B1P43353 468 aa4.32□□□□□ -1.72
CLIP1-217ENST00000543205 ZNF121P58317 390 aaPredicted RBP4.32□□□□□ -1.72
CLIP1-217ENST00000543205 MED21Q13503 144 aa4.32□□□□□ -1.72
CLIP1-217ENST00000543205 GPR176Q14439 515 aa4.32□□□□□ -1.72
CLIP1-217ENST00000543205 HLXQ14774 488 aaPredicted RBP4.32□□□□□ -1.72
CLIP1-217ENST00000543205 DEFB113Q30KQ7 82 aa4.32□□□□□ -1.72
CLIP1-217ENST00000543205 LIPKQ5VXJ0 399 aa4.32□□□□□ -1.72
CLIP1-217ENST00000543205 PLEKHG7Q6ZR37 379 aa4.32□□□□□ -1.72
CLIP1-217ENST00000543205 COLCA1Q6ZS62 124 aa4.32□□□□□ -1.72
CLIP1-217ENST00000543205 SSX6Q7RTT6 188 aa4.32□□□□□ -1.72
CLIP1-217ENST00000543205 MRPL21Q7Z2W9 205 aaKnown RBP4.32□□□□□ -1.72
CLIP1-217ENST00000543205 FAM220AQ7Z4H9 259 aa4.32□□□□□ -1.72
CLIP1-217ENST00000543205 CCDC190Q86UF4 302 aa4.32□□□□□ -1.72
CLIP1-217ENST00000543205 LRP11Q86VZ4 500 aa4.32□□□□□ -1.72
CLIP1-217ENST00000543205 RFLNBQ8N5W9 214 aa4.32□□□□□ -1.72
CLIP1-217ENST00000543205 ACBD7Q8N6N7 88 aa4.32□□□□□ -1.72
CLIP1-217ENST00000543205 BPIFB6Q8NFQ5 453 aa4.32□□□□□ -1.72
CLIP1-217ENST00000543205 OR52H1Q8NGJ2 320 aa4.32□□□□□ -1.72
CLIP1-217ENST00000543205 CD300LFQ8TDQ1 290 aa4.32□□□□□ -1.72
CLIP1-217ENST00000543205 CNBD2Q96M20 576 aa4.32□□□□□ -1.72
CLIP1-217ENST00000543205 ZNF184Q99676 751 aaPredicted RBP4.32□□□□□ -1.72
CLIP1-217ENST00000543205 CHRDL1Q9BU40 450 aa4.32□□□□□ -1.72
CLIP1-217ENST00000543205 ABHD14AQ9BUJ0 271 aa4.32□□□□□ -1.72
CLIP1-217ENST00000543205 ANKRD60Q9BZ19 345 aa4.32□□□□□ -1.72
CLIP1-217ENST00000543205 DNTTIP1Q9H147 329 aa4.32□□□□□ -1.72
CLIP1-217ENST00000543205 RGCCQ9H4X1 137 aa4.32□□□□□ -1.72
CLIP1-217ENST00000543205 MSL2Q9HCI7 577 aa4.32□□□□□ -1.72
CLIP1-217ENST00000543205 INPP5EQ9NRR6 644 aa4.32□□□□□ -1.72
CLIP1-217ENST00000543205 SCN3BQ9NY72 215 aa4.32□□□□□ -1.72
CLIP1-217ENST00000543205 TAAR3PQ9P1P4 343 aa4.32□□□□□ -1.72
CLIP1-217ENST00000543205 GNG8Q9UK08 70 aa4.32□□□□□ -1.72
CLIP1-217ENST00000543205 IGLV3-9A0A075B6K5 115 aa4.31□□□□□ -1.72
CLIP1-217ENST00000543205 PLSCR5A0PG75 271 aa4.31□□□□□ -1.72
CLIP1-217ENST00000543205 METTL21EPA6NDL7 271 aa4.31□□□□□ -1.72
CLIP1-217ENST00000543205 GGT3PA6NGU5 568 aa4.31□□□□□ -1.72
CLIP1-217ENST00000543205 PRR32B1ATL7 298 aa4.31□□□□□ -1.72
CLIP1-217ENST00000543205 FAM157AC9JC47 383 aa4.31□□□□□ -1.72
CLIP1-217ENST00000543205 J3QRE1 110 aa4.31□□□□□ -1.72
CLIP1-217ENST00000543205 ZNF701M0R085 212 aaPredicted RBP4.31□□□□□ -1.72
CLIP1-217ENST00000543205 M0R233 179 aa4.31□□□□□ -1.72
CLIP1-217ENST00000543205 MAGEB4O15481 346 aaPredicted RBP4.31□□□□□ -1.72
CLIP1-217ENST00000543205 XRCC2O43543 280 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms