RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 DAZAP2Q15038 168 aaPredicted RBP15□□□□□ -0.01
CLIP1-215ENST00000541108 SPIN3Q5JUX0 258 aa15□□□□□ -0.01
CLIP1-215ENST00000541108 FAM209AQ5JX71 171 aa15□□□□□ -0.01
CLIP1-215ENST00000541108 DCDC5Q6ZRR9 648 aa15□□□□□ -0.01
CLIP1-215ENST00000541108 CENPSQ8N2Z9 138 aa15□□□□□ -0.01
CLIP1-215ENST00000541108 ZNF488Q96MN9 340 aa15□□□□□ -0.01
CLIP1-215ENST00000541108 C11orf54Q9H0W9 315 aaPredicted RBP15□□□□□ -0.01
CLIP1-215ENST00000541108 FN3KRPQ9HA64 309 aa15□□□□□ -0.01
CLIP1-215ENST00000541108 UFSP2Q9NUQ7 469 aa15□□□□□ -0.01
CLIP1-215ENST00000541108 RASL12Q9NYN1 266 aa15□□□□□ -0.01
CLIP1-215ENST00000541108 ELF5Q9UKW6 265 aaPredicted RBP15□□□□□ -0.01
CLIP1-215ENST00000541108 PLEKHA6Q9Y2H5 1048 aa15□□□□□ -0.01
CLIP1-215ENST00000541108 KMT2BQ9UMN6 2715 aaPredicted RBP14.99□□□□□ -0.01
CLIP1-215ENST00000541108 IGHV3-64DA0A0J9YX35 117 aa14.99□□□□□ -0.01
CLIP1-215ENST00000541108 LINC00854A0A1B0GVQ3 168 aa14.99□□□□□ -0.01
CLIP1-215ENST00000541108 NXPH2O95156 264 aa14.99□□□□□ -0.01
CLIP1-215ENST00000541108 TNFRSF1AP19438 455 aa14.99□□□□□ -0.01
CLIP1-215ENST00000541108 CBX5P45973 191 aa14.99□□□□□ -0.01
CLIP1-215ENST00000541108 ZNF146Q15072 292 aa14.99□□□□□ -0.01
CLIP1-215ENST00000541108 MST1LQ2TV78 715 aa14.99□□□□□ -0.01
CLIP1-215ENST00000541108 FIP1L1Q6UN15 594 aaKnown RBP14.99□□□□□ -0.01
CLIP1-215ENST00000541108 ZNF826PQ6ZT77 177 aa14.99□□□□□ -0.01
CLIP1-215ENST00000541108 GDPD3Q7L5L3 318 aa14.99□□□□□ -0.01
CLIP1-215ENST00000541108 C6orf201Q7Z4U5 140 aa14.99□□□□□ -0.01
CLIP1-215ENST00000541108 OCSTAMPQ9BR26 566 aa14.99□□□□□ -0.01
CLIP1-215ENST00000541108 C1orf123Q9NWV4 160 aa14.99□□□□□ -0.01
CLIP1-215ENST00000541108 RCC2Q9P258 522 aaKnown RBP14.99□□□□□ -0.01
CLIP1-215ENST00000541108 FBXO9Q9UK97 447 aaPredicted RBP14.99□□□□□ -0.01
CLIP1-215ENST00000541108 KLF2Q9Y5W3 355 aaPredicted RBP14.99□□□□□ -0.01
CLIP1-215ENST00000541108 CACNG2Q9Y698 323 aa14.99□□□□□ -0.01
CLIP1-215ENST00000541108 ROS1P08922 2347 aa14.98□□□□□ -0.01
CLIP1-215ENST00000541108 C19orf84I3L1E1 186 aa14.98□□□□□ -0.01
CLIP1-215ENST00000541108 GLAP06280 429 aa14.98□□□□□ -0.01
CLIP1-215ENST00000541108 ARFRP1Q13795 201 aa14.98□□□□□ -0.01
CLIP1-215ENST00000541108 SWI5Q1ZZU3 235 aa14.98□□□□□ -0.01
CLIP1-215ENST00000541108 PCGF3Q3KNV8 242 aa14.98□□□□□ -0.01
CLIP1-215ENST00000541108 NKAPLQ5M9Q1 402 aa14.98□□□□□ -0.01
CLIP1-215ENST00000541108 BATF2Q8N1L9 274 aa14.98□□□□□ -0.01
CLIP1-215ENST00000541108 MUC15Q8N387 334 aa14.98□□□□□ -0.01
CLIP1-215ENST00000541108 ITLN1Q8WWA0 313 aa14.98□□□□□ -0.01
CLIP1-215ENST00000541108 ZNF462Q96JM2 2506 aa14.98□□□□□ -0.01
CLIP1-215ENST00000541108 NAP1L6A6NFF2 107 aa14.97□□□□□ -0.01
CLIP1-215ENST00000541108 GOSR1O95249 250 aa14.97□□□□□ -0.01
CLIP1-215ENST00000541108 GLRA1P23415 457 aa14.97□□□□□ -0.01
CLIP1-215ENST00000541108 RFX2P48378 723 aa14.97□□□□□ -0.01
CLIP1-215ENST00000541108 TESK1Q15569 626 aa14.97□□□□□ -0.01
CLIP1-215ENST00000541108 OLFML2AQ68BL7 652 aa14.97□□□□□ -0.01
CLIP1-215ENST00000541108 NRARPQ7Z6K4 114 aa14.97□□□□□ -0.01
CLIP1-215ENST00000541108 TRAPPC6BQ86SZ2 158 aa14.97□□□□□ -0.01
CLIP1-215ENST00000541108 Q8TCH9 128 aa14.97□□□□□ -0.01
CLIP1-215ENST00000541108 NUDCD2Q8WVJ2 157 aa14.97□□□□□ -0.01
CLIP1-215ENST00000541108 GCM1Q9NP62 436 aa14.97□□□□□ -0.01
CLIP1-215ENST00000541108 CHD3Q12873 2000 aaKnown RBP14.97□□□□□ -0.01
CLIP1-215ENST00000541108 hCG_1807616A0A1W2PRN6 198 aa14.97□□□□□ -0.01
CLIP1-215ENST00000541108 SRRM5B3KS81 715 aa14.97□□□□□ -0.01
CLIP1-215ENST00000541108 SSX5O60225 188 aa14.97□□□□□ -0.01
CLIP1-215ENST00000541108 LHBP01229 141 aa14.97□□□□□ -0.01
CLIP1-215ENST00000541108 RCVRNP35243 200 aa14.97□□□□□ -0.01
CLIP1-215ENST00000541108 TAS2R19P59542 299 aa14.97□□□□□ -0.01
CLIP1-215ENST00000541108 ATAD3CQ5T2N8 411 aa14.97□□□□□ -0.01
CLIP1-215ENST00000541108 Q6ZNX1 250 aa14.97□□□□□ -0.01
CLIP1-215ENST00000541108 FAM90A1Q86YD7 464 aa14.97□□□□□ -0.01
CLIP1-215ENST00000541108 TMEM229BQ8NBD8 167 aa14.97□□□□□ -0.01
CLIP1-215ENST00000541108 FAAP24Q9BTP7 215 aa14.97□□□□□ -0.01
CLIP1-215ENST00000541108 EGLN1Q9GZT9 426 aa14.97□□□□□ -0.01
CLIP1-215ENST00000541108 IL36RNQ9UBH0 155 aa14.97□□□□□ -0.01
CLIP1-215ENST00000541108 GLS2Q9UI32 602 aa14.97□□□□□ -0.01
CLIP1-215ENST00000541108 ANAPC10Q9UM13 185 aa14.97□□□□□ -0.01
CLIP1-215ENST00000541108 MEIS3P1A6NDR6 274 aa14.96□□□□□ -0.01
CLIP1-215ENST00000541108 NAT1P18440 290 aa14.96□□□□□ -0.01
CLIP1-215ENST00000541108 SLC6A1P30531 599 aa14.96□□□□□ -0.01
CLIP1-215ENST00000541108 FAUP35544 74 aaKnown RBP14.96□□□□□ -0.01
CLIP1-215ENST00000541108 IKZF1Q13422 519 aa14.96□□□□□ -0.01
CLIP1-215ENST00000541108 SMIM21Q3B7S5 101 aa14.96□□□□□ -0.01
CLIP1-215ENST00000541108 ACP7Q6ZNF0 438 aa14.96□□□□□ -0.01
CLIP1-215ENST00000541108 RTN4RL2Q86UN3 420 aa14.96□□□□□ -0.01
CLIP1-215ENST00000541108 MOGAT3Q86VF5 341 aa14.96□□□□□ -0.01
CLIP1-215ENST00000541108 DUSP18Q8NEJ0 188 aa14.96□□□□□ -0.01
CLIP1-215ENST00000541108 LRRC29Q8WV35 223 aa14.96□□□□□ -0.01
CLIP1-215ENST00000541108 FBXW5Q969U6 566 aa14.96□□□□□ -0.01
CLIP1-215ENST00000541108 SULT4A1Q9BR01 284 aa14.96□□□□□ -0.01
CLIP1-215ENST00000541108 OCEL1Q9H607 264 aa14.96□□□□□ -0.01
CLIP1-215ENST00000541108 SEBOXQ9HB31 216 aaPredicted RBP14.96□□□□□ -0.01
CLIP1-215ENST00000541108 DYNLRB1Q9NP97 96 aa14.96□□□□□ -0.01
CLIP1-215ENST00000541108 FAIMQ9NVQ4 179 aa14.96□□□□□ -0.01
CLIP1-215ENST00000541108 SH2D1BO14796 132 aa14.95□□□□□ -0.02
CLIP1-215ENST00000541108 DEGS1O15121 323 aa14.95□□□□□ -0.02
CLIP1-215ENST00000541108 SNU13P55769 128 aaKnown RBP14.95□□□□□ -0.02
CLIP1-215ENST00000541108 SNRPD2P62316 118 aaKnown RBP14.95□□□□□ -0.02
CLIP1-215ENST00000541108 MRPS15P82914 257 aaKnown RBP14.95□□□□□ -0.02
CLIP1-215ENST00000541108 RBM39Q14498 530 aaKnown RBP14.95□□□□□ -0.02
CLIP1-215ENST00000541108 SPRNQ5BIV9 151 aa14.95□□□□□ -0.02
CLIP1-215ENST00000541108 Q6P435 159 aa14.95□□□□□ -0.02
CLIP1-215ENST00000541108 CCBE1Q6UXH8 406 aaPredicted RBP14.95□□□□□ -0.02
CLIP1-215ENST00000541108 ENKURQ8TC29 256 aa14.95□□□□□ -0.02
CLIP1-215ENST00000541108 HRASLSQ9HDD0 168 aa14.95□□□□□ -0.02
CLIP1-215ENST00000541108 IFT46Q9NQC8 304 aa14.95□□□□□ -0.02
CLIP1-215ENST00000541108 DECR2Q9NUI1 292 aa14.95□□□□□ -0.02
CLIP1-215ENST00000541108 ZNF581Q9P0T4 197 aa14.95□□□□□ -0.02
CLIP1-215ENST00000541108 NPTNQ9Y639 398 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms