RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 ZNF845Q96IR2 970 aaPredicted RBP5.85□□□□□ -1.47
USP28-207ENST00000538475 C18orf12Q96KH6 178 aa5.85□□□□□ -1.47
USP28-207ENST00000538475 VSTM2LQ96N03 204 aa5.85□□□□□ -1.47
USP28-207ENST00000538475 HIST1H2AAQ96QV6 131 aa5.85□□□□□ -1.47
USP28-207ENST00000538475 OR5B12Q96R08 314 aa5.85□□□□□ -1.47
USP28-207ENST00000538475 PCGF1Q9BSM1 259 aa5.85□□□□□ -1.47
USP28-207ENST00000538475 TMEM59Q9BXS4 323 aa5.85□□□□□ -1.47
USP28-207ENST00000538475 PARD6GQ9BYG4 376 aaPredicted RBP5.85□□□□□ -1.47
USP28-207ENST00000538475 OR10A2Q9H208 303 aa5.85□□□□□ -1.47
USP28-207ENST00000538475 KCNK15Q9H427 330 aa5.85□□□□□ -1.47
USP28-207ENST00000538475 C11orf1Q9H5F2 150 aa5.85□□□□□ -1.47
USP28-207ENST00000538475 NAA60Q9H7X0 242 aa5.85□□□□□ -1.47
USP28-207ENST00000538475 WFDC1Q9HC57 220 aa5.85□□□□□ -1.47
USP28-207ENST00000538475 FKBP11Q9NYL4 201 aa5.85□□□□□ -1.47
USP28-207ENST00000538475 EHFQ9NZC4 300 aa5.85□□□□□ -1.47
USP28-207ENST00000538475 NAT8Q9UHE5 227 aa5.85□□□□□ -1.47
USP28-207ENST00000538475 PADI1Q9ULC6 663 aa5.85□□□□□ -1.47
USP28-207ENST00000538475 HSF4Q9ULV5 492 aa5.85□□□□□ -1.47
USP28-207ENST00000538475 GAB2Q9UQC2 676 aa5.85□□□□□ -1.47
USP28-207ENST00000538475 MRPS28Q9Y2Q9 187 aaKnown RBP5.85□□□□□ -1.47
USP28-207ENST00000538475 CHTOPQ9Y3Y2 248 aaKnown RBP5.85□□□□□ -1.47
USP28-207ENST00000538475 LSM5Q9Y4Y9 91 aaKnown RBP5.85□□□□□ -1.47
USP28-207ENST00000538475 HCFC2Q9Y5Z7 792 aa5.85□□□□□ -1.47
USP28-207ENST00000538475 PCNX3Q9H6A9 2034 aa5.85□□□□□ -1.47
USP28-207ENST00000538475 A0A087WV48 116 aa5.84□□□□□ -1.47
USP28-207ENST00000538475 NPIPA5A0A0B4J1W7 369 aa5.84□□□□□ -1.47
USP28-207ENST00000538475 MAP1LC3B2A6NCE7 125 aa5.84□□□□□ -1.47
USP28-207ENST00000538475 ZNF727A8MUV8 499 aa5.84□□□□□ -1.47
USP28-207ENST00000538475 ZNF705GA8MUZ8 300 aaPredicted RBP5.84□□□□□ -1.47
USP28-207ENST00000538475 HIDE1A8MVS5 230 aa5.84□□□□□ -1.47
USP28-207ENST00000538475 B4E171 279 aa5.84□□□□□ -1.47
USP28-207ENST00000538475 NPIPA7E9PJI5 369 aa5.84□□□□□ -1.47
USP28-207ENST00000538475 TMEM250H0YL14 139 aa5.84□□□□□ -1.47
USP28-207ENST00000538475 H0YL77 283 aa5.84□□□□□ -1.47
USP28-207ENST00000538475 FOXS1O43638 330 aa5.84□□□□□ -1.47
USP28-207ENST00000538475 HLA-DQA2P01906 255 aa5.84□□□□□ -1.47
USP28-207ENST00000538475 BGLAPP02818 100 aa5.84□□□□□ -1.47
USP28-207ENST00000538475 SNRPCP09234 159 aaKnown RBP5.84□□□□□ -1.47
USP28-207ENST00000538475 QDPRP09417 244 aa5.84□□□□□ -1.47
USP28-207ENST00000538475 NPIPA8P0DM63 369 aa5.84□□□□□ -1.47
USP28-207ENST00000538475 GLI4P10075 376 aa5.84□□□□□ -1.47
USP28-207ENST00000538475 ESDP10768 282 aa5.84□□□□□ -1.47
USP28-207ENST00000538475 PTNP21246 168 aa5.84□□□□□ -1.47
USP28-207ENST00000538475 CCL1P22362 96 aa5.84□□□□□ -1.47
USP28-207ENST00000538475 GLRA1P23415 457 aa5.84□□□□□ -1.47
USP28-207ENST00000538475 ATP6V0CP27449 155 aa5.84□□□□□ -1.47
USP28-207ENST00000538475 G0S2P27469 103 aa5.84□□□□□ -1.47
USP28-207ENST00000538475 PTGER1P34995 402 aa5.84□□□□□ -1.47
USP28-207ENST00000538475 PPM1AP35813 382 aa5.84□□□□□ -1.47
USP28-207ENST00000538475 GNALP38405 381 aa5.84□□□□□ -1.47
USP28-207ENST00000538475 SNU13P55769 128 aaKnown RBP5.84□□□□□ -1.47
USP28-207ENST00000538475 TAS2R30P59541 319 aa5.84□□□□□ -1.47
USP28-207ENST00000538475 SERF2P84101 59 aa5.84□□□□□ -1.47
USP28-207ENST00000538475 CCL14Q16627 93 aa5.84□□□□□ -1.47
USP28-207ENST00000538475 HNRNPA1L2Q32P51 320 aaKnown RBP5.84□□□□□ -1.47
USP28-207ENST00000538475 LCE4AQ5TA78 99 aa5.84□□□□□ -1.47
USP28-207ENST00000538475 C1QL3Q5VWW1 255 aa5.84□□□□□ -1.47
USP28-207ENST00000538475 FAM90A2PQ658T7 463 aa5.84□□□□□ -1.47
USP28-207ENST00000538475 ZNF343Q6P1L6 599 aa5.84□□□□□ -1.47
USP28-207ENST00000538475 PLXDC2Q6UX71 529 aa5.84□□□□□ -1.47
USP28-207ENST00000538475 TMEM182Q6ZP80 229 aaPredicted RBP5.84□□□□□ -1.47
USP28-207ENST00000538475 CYP2G1PQ6ZSU1 146 aa5.84□□□□□ -1.47
USP28-207ENST00000538475 SMIM15Q7Z3B0 74 aa5.84□□□□□ -1.47
USP28-207ENST00000538475 GALNTL5Q7Z4T8 443 aa5.84□□□□□ -1.47
USP28-207ENST00000538475 MRGPRGQ86SM5 289 aa5.84□□□□□ -1.47
USP28-207ENST00000538475 THNSL2Q86YJ6 484 aa5.84□□□□□ -1.47
USP28-207ENST00000538475 HIST2H2ABQ8IUE6 130 aaPredicted RBP5.84□□□□□ -1.47
USP28-207ENST00000538475 GBGT1Q8N5D6 347 aa5.84□□□□□ -1.47
USP28-207ENST00000538475 OR2C3Q8N628 320 aa5.84□□□□□ -1.47
USP28-207ENST00000538475 C10orf53Q8N6V4 93 aa5.84□□□□□ -1.47
USP28-207ENST00000538475 CYB561D1Q8N8Q1 229 aa5.84□□□□□ -1.47
USP28-207ENST00000538475 NAXEQ8NCW5 288 aa5.84□□□□□ -1.47
USP28-207ENST00000538475 BHLHE23Q8NDY6 225 aa5.84□□□□□ -1.47
USP28-207ENST00000538475 MRGPRDQ8TDS7 321 aa5.84□□□□□ -1.47
USP28-207ENST00000538475 SSC4DQ8WTU2 575 aa5.84□□□□□ -1.47
USP28-207ENST00000538475 RNF133Q8WVZ7 376 aa5.84□□□□□ -1.47
USP28-207ENST00000538475 HAS2Q92819 552 aa5.84□□□□□ -1.47
USP28-207ENST00000538475 PINX1Q96BK5 328 aaKnown RBP5.84□□□□□ -1.47
USP28-207ENST00000538475 CAPNS2Q96L46 248 aa5.84□□□□□ -1.47
USP28-207ENST00000538475 SNX22Q96L94 193 aa5.84□□□□□ -1.47
USP28-207ENST00000538475 BMFQ96LC9 184 aa5.84□□□□□ -1.47
USP28-207ENST00000538475 TSSK2Q96PF2 358 aa5.84□□□□□ -1.47
USP28-207ENST00000538475 OR2A5Q96R48 311 aa5.84□□□□□ -1.47
USP28-207ENST00000538475 AMELYQ99218 206 aa5.84□□□□□ -1.47
USP28-207ENST00000538475 RARRES2Q99969 163 aa5.84□□□□□ -1.47
USP28-207ENST00000538475 ZNF2Q9BSG1 426 aaPredicted RBP5.84□□□□□ -1.47
USP28-207ENST00000538475 PSMG3Q9BT73 122 aaPredicted RBP5.84□□□□□ -1.47
USP28-207ENST00000538475 MAP1LC3BQ9GZQ8 125 aa5.84□□□□□ -1.47
USP28-207ENST00000538475 NKX2-4Q9H2Z4 354 aa5.84□□□□□ -1.47
USP28-207ENST00000538475 ZMAT3Q9HA38 289 aaKnown RBP5.84□□□□□ -1.47
USP28-207ENST00000538475 GPR173Q9NS66 373 aa5.84□□□□□ -1.47
USP28-207ENST00000538475 MRPL22Q9NWU5 206 aaKnown RBP5.84□□□□□ -1.47
USP28-207ENST00000538475 WSB2Q9NYS7 404 aaPredicted RBP5.84□□□□□ -1.47
USP28-207ENST00000538475 NAGKQ9UJ70 344 aa5.84□□□□□ -1.47
USP28-207ENST00000538475 TDRD6O60522 2096 aaKnown RBP5.84□□□□□ -1.47
USP28-207ENST00000538475 ARHGEF17Q96PE2 2063 aaPredicted RBP5.84□□□□□ -1.47
USP28-207ENST00000538475 NOTCH4Q99466 2003 aa5.84□□□□□ -1.48
USP28-207ENST00000538475 ARID1AO14497 2285 aa5.83□□□□□ -1.48
USP28-207ENST00000538475 A0A1W2PQD3 144 aa5.83□□□□□ -1.48
USP28-207ENST00000538475 TCRBV21S2A2A0A5A6 115 aa5.83□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms