RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 IGFBPL1Q8WX77 278 aa10.2□□□□□ -0.78
CLIP1-208ENST00000537004 CPNE2Q96FN4 548 aaPredicted RBP10.2□□□□□ -0.78
CLIP1-208ENST00000537004 ELL3Q9HB65 397 aaPredicted RBP10.2□□□□□ -0.78
CLIP1-208ENST00000537004 KCNK7Q9Y2U2 307 aa10.2□□□□□ -0.78
CLIP1-208ENST00000537004 CSPG4Q6UVK1 2322 aa10.2□□□□□ -0.78
CLIP1-208ENST00000537004 SVEP1Q4LDE5 3571 aa10.2□□□□□ -0.78
CLIP1-208ENST00000537004 SSX5O60225 188 aa10.19□□□□□ -0.78
CLIP1-208ENST00000537004 SMPD2O60906 423 aa10.19□□□□□ -0.78
CLIP1-208ENST00000537004 IL5P05113 134 aa10.19□□□□□ -0.78
CLIP1-208ENST00000537004 ANXA3P12429 323 aa10.19□□□□□ -0.78
CLIP1-208ENST00000537004 CD40P25942 277 aa10.19□□□□□ -0.78
CLIP1-208ENST00000537004 ERP29P30040 261 aaKnown RBP10.19□□□□□ -0.78
CLIP1-208ENST00000537004 GZMKP49863 264 aa10.19□□□□□ -0.78
CLIP1-208ENST00000537004 TMEM50BP56557 158 aa10.19□□□□□ -0.78
CLIP1-208ENST00000537004 ZP1P60852 638 aa10.19□□□□□ -0.78
CLIP1-208ENST00000537004 ZNF672Q499Z4 452 aaPredicted RBP10.19□□□□□ -0.78
CLIP1-208ENST00000537004 CCDC28AQ8IWP9 274 aa10.19□□□□□ -0.78
CLIP1-208ENST00000537004 FAM89BQ8N5H3 189 aa10.19□□□□□ -0.78
CLIP1-208ENST00000537004 ZNF611Q8N823 705 aa10.19□□□□□ -0.78
CLIP1-208ENST00000537004 OR1K1Q8NGR3 316 aa10.19□□□□□ -0.78
CLIP1-208ENST00000537004 IFT46Q9NQC8 304 aa10.19□□□□□ -0.78
CLIP1-208ENST00000537004 BEX4Q9NWD9 120 aaPredicted RBP10.19□□□□□ -0.78
CLIP1-208ENST00000537004 HEATR1Q9H583 2144 aaKnown RBP10.19□□□□□ -0.78
CLIP1-208ENST00000537004 IGKV1-27A0A075B6S5 117 aa10.19□□□□□ -0.78
CLIP1-208ENST00000537004 ZNF816-ZNF321PA0A0X1KG74 233 aa10.19□□□□□ -0.78
CLIP1-208ENST00000537004 ZNF735P0CB33 412 aa10.19□□□□□ -0.78
CLIP1-208ENST00000537004 TMEM225BP0DP42 221 aa10.19□□□□□ -0.78
CLIP1-208ENST00000537004 VSIG10L2P0DP72 767 aa10.19□□□□□ -0.78
CLIP1-208ENST00000537004 PLP2Q04941 152 aa10.19□□□□□ -0.78
CLIP1-208ENST00000537004 MEF2DQ14814 521 aa10.19□□□□□ -0.78
CLIP1-208ENST00000537004 ZNF626Q68DY1 528 aa10.19□□□□□ -0.78
CLIP1-208ENST00000537004 OR52W1Q6IF63 320 aa10.19□□□□□ -0.78
CLIP1-208ENST00000537004 SLC22A25Q6T423 547 aa10.19□□□□□ -0.78
CLIP1-208ENST00000537004 TMEM108Q6UXF1 575 aa10.19□□□□□ -0.78
CLIP1-208ENST00000537004 IDO2Q6ZQW0 420 aa10.19□□□□□ -0.78
CLIP1-208ENST00000537004 BPIFB2Q8N4F0 458 aa10.19□□□□□ -0.78
CLIP1-208ENST00000537004 C1orf162Q8NEQ5 155 aaPredicted RBP10.19□□□□□ -0.78
CLIP1-208ENST00000537004 BCL2L2Q92843 193 aaPredicted RBP10.19□□□□□ -0.78
CLIP1-208ENST00000537004 FBXW5Q969U6 566 aa10.19□□□□□ -0.78
CLIP1-208ENST00000537004 ARHGAP5-AS1Q96IT6 56 aa10.19□□□□□ -0.78
CLIP1-208ENST00000537004 TRAF4Q9BUZ4 470 aaPredicted RBP10.19□□□□□ -0.78
CLIP1-208ENST00000537004 TMUB1Q9BVT8 246 aa10.19□□□□□ -0.78
CLIP1-208ENST00000537004 GPN1Q9HCN4 374 aaPredicted RBP10.19□□□□□ -0.78
CLIP1-208ENST00000537004 CISD1Q9NZ45 108 aaKnown RBP10.19□□□□□ -0.78
CLIP1-208ENST00000537004 ZNF69Q9UC07 566 aa10.19□□□□□ -0.78
CLIP1-208ENST00000537004 MEIKINA0A087WXM9 373 aa10.18□□□□□ -0.78
CLIP1-208ENST00000537004 ZSCAN5BA6NJL1 495 aa10.18□□□□□ -0.78
CLIP1-208ENST00000537004 MFNGO00587 321 aa10.18□□□□□ -0.78
CLIP1-208ENST00000537004 FABP7O15540 132 aa10.18□□□□□ -0.78
CLIP1-208ENST00000537004 CREBL2O60519 120 aaPredicted RBP10.18□□□□□ -0.78
CLIP1-208ENST00000537004 DANCRP0C864 163 aa10.18□□□□□ -0.78
CLIP1-208ENST00000537004 CD99P14209 185 aa10.18□□□□□ -0.78
CLIP1-208ENST00000537004 CDKN1AP38936 164 aa10.18□□□□□ -0.78
CLIP1-208ENST00000537004 RBP2P50120 134 aa10.18□□□□□ -0.78
CLIP1-208ENST00000537004 GK2Q14410 553 aaPredicted RBP10.18□□□□□ -0.78
CLIP1-208ENST00000537004 NKPD1Q17RQ9 610 aa10.18□□□□□ -0.78
CLIP1-208ENST00000537004 RNASE10Q5GAN6 216 aaKnown RBP10.18□□□□□ -0.78
CLIP1-208ENST00000537004 Q5PR19 223 aa10.18□□□□□ -0.78
CLIP1-208ENST00000537004 LHFPL2Q6ZUX7 228 aa10.18□□□□□ -0.78
CLIP1-208ENST00000537004 SLC36A1Q7Z2H8 476 aa10.18□□□□□ -0.78
CLIP1-208ENST00000537004 DPPA2Q7Z7J5 298 aa10.18□□□□□ -0.78
CLIP1-208ENST00000537004 PIGCQ92535 297 aa10.18□□□□□ -0.78
CLIP1-208ENST00000537004 APOBEC3DQ96AK3 386 aaPredicted RBP10.18□□□□□ -0.78
CLIP1-208ENST00000537004 BORCS8Q96FH0 119 aa10.18□□□□□ -0.78
CLIP1-208ENST00000537004 POM121L2Q96KW2 1035 aa10.18□□□□□ -0.78
CLIP1-208ENST00000537004 SLC6A7Q99884 636 aa10.18□□□□□ -0.78
CLIP1-208ENST00000537004 TM2D1Q9BX74 207 aa10.18□□□□□ -0.78
CLIP1-208ENST00000537004 SCP2D1Q9UJQ7 156 aa10.18□□□□□ -0.78
CLIP1-208ENST00000537004 BOLA1Q9Y3E2 137 aa10.18□□□□□ -0.78
CLIP1-208ENST00000537004 RAI1Q7Z5J4 1906 aaPredicted RBP10.18□□□□□ -0.78
CLIP1-208ENST00000537004 C2CD3Q4AC94 2353 aa10.18□□□□□ -0.78
CLIP1-208ENST00000537004 FOXI3A8MTJ6 420 aaPredicted RBP10.17□□□□□ -0.78
CLIP1-208ENST00000537004 SNRPGP15A8MWD9 76 aa10.17□□□□□ -0.78
CLIP1-208ENST00000537004 DISC1C4P0D8 188 aa10.17□□□□□ -0.78
CLIP1-208ENST00000537004 E7EQL1 145 aa10.17□□□□□ -0.78
CLIP1-208ENST00000537004 SPRY1O43609 319 aaPredicted RBP10.17□□□□□ -0.78
CLIP1-208ENST00000537004 ANGPTL7O43827 346 aa10.17□□□□□ -0.78
CLIP1-208ENST00000537004 PLATP00750 562 aa10.17□□□□□ -0.78
CLIP1-208ENST00000537004 CD8AP01732 235 aa10.17□□□□□ -0.78
CLIP1-208ENST00000537004 CSN2P05814 226 aa10.17□□□□□ -0.78
CLIP1-208ENST00000537004 CPT2P23786 658 aa10.17□□□□□ -0.78
CLIP1-208ENST00000537004 OR3A3P47888 321 aa10.17□□□□□ -0.78
CLIP1-208ENST00000537004 PNLIPRP3Q17RR3 467 aa10.17□□□□□ -0.78
CLIP1-208ENST00000537004 ZBTB37Q5TC79 503 aa10.17□□□□□ -0.78
CLIP1-208ENST00000537004 PLCXD3Q63HM9 321 aa10.17□□□□□ -0.78
CLIP1-208ENST00000537004 C17orf78Q8N4C9 275 aa10.17□□□□□ -0.78
CLIP1-208ENST00000537004 TMEM171Q8WVE6 324 aa10.17□□□□□ -0.78
CLIP1-208ENST00000537004 TECTBQ96PL2 329 aa10.17□□□□□ -0.78
CLIP1-208ENST00000537004 SLC25A21Q9BQT8 299 aaPredicted RBP10.17□□□□□ -0.78
CLIP1-208ENST00000537004 REPIN1Q9BWE0 567 aaKnown RBP10.17□□□□□ -0.78
CLIP1-208ENST00000537004 METTL9Q9H1A3 318 aa10.17□□□□□ -0.78
CLIP1-208ENST00000537004 PLSCR3Q9NRY6 295 aa10.17□□□□□ -0.78
CLIP1-208ENST00000537004 SLC7A11Q9UPY5 501 aa10.17□□□□□ -0.78
CLIP1-208ENST00000537004 SHOXO15266 292 aa10.17□□□□□ -0.78
CLIP1-208ENST00000537004 NDUFS7O75251 213 aa10.17□□□□□ -0.78
CLIP1-208ENST00000537004 PTAFRP25105 342 aa10.17□□□□□ -0.78
CLIP1-208ENST00000537004 BLVRBP30043 206 aaPredicted RBP10.17□□□□□ -0.78
CLIP1-208ENST00000537004 HRH1P35367 487 aa10.17□□□□□ -0.78
CLIP1-208ENST00000537004 FUT6P51993 359 aa10.17□□□□□ -0.78
CLIP1-208ENST00000537004 MALLQ13021 153 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms