RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 TMEM123Q8N131 208 aa8.03□□□□□ -1.12
LIMCH1-215ENST00000512632 ZNF561Q8N587 486 aa8.03□□□□□ -1.12
LIMCH1-215ENST00000512632 CCDC74BQ96LY2 380 aa8.03□□□□□ -1.12
LIMCH1-215ENST00000512632 DKKL1Q9UK85 242 aa8.03□□□□□ -1.12
LIMCH1-215ENST00000512632 PI4KAP42356 2102 aa8.03□□□□□ -1.12
LIMCH1-215ENST00000512632 FRYLO94915 3013 aa8.03□□□□□ -1.12
LIMCH1-215ENST00000512632 GPR137BO60478 399 aa8.03□□□□□ -1.12
LIMCH1-215ENST00000512632 NRASP01111 189 aa8.03□□□□□ -1.12
LIMCH1-215ENST00000512632 ZNF32P17041 273 aa8.03□□□□□ -1.12
LIMCH1-215ENST00000512632 SPINK2P20155 84 aa8.03□□□□□ -1.12
LIMCH1-215ENST00000512632 AADACP22760 399 aa8.03□□□□□ -1.12
LIMCH1-215ENST00000512632 GLP1RP43220 463 aa8.03□□□□□ -1.12
LIMCH1-215ENST00000512632 P2RY1P47900 373 aa8.03□□□□□ -1.12
LIMCH1-215ENST00000512632 POLR2GP62487 172 aaKnown RBP eCLIP8.03□□□□□ -1.12
LIMCH1-215ENST00000512632 CCL20P78556 96 aa8.03□□□□□ -1.12
LIMCH1-215ENST00000512632 LGI3Q8N145 548 aa8.03□□□□□ -1.12
LIMCH1-215ENST00000512632 TMEM54Q969K7 222 aa8.03□□□□□ -1.12
LIMCH1-215ENST00000512632 TP53RKQ96S44 253 aa8.03□□□□□ -1.12
LIMCH1-215ENST00000512632 RNF122Q9H9V4 155 aa8.03□□□□□ -1.12
LIMCH1-215ENST00000512632 POMT1Q9Y6A1 747 aa8.03□□□□□ -1.12
LIMCH1-215ENST00000512632 NSG1A0A0A6YYJ2 146 aa8.03□□□□□ -1.12
LIMCH1-215ENST00000512632 IGHV3-9P01782 118 aa8.03□□□□□ -1.12
LIMCH1-215ENST00000512632 HTR5AP47898 357 aa8.03□□□□□ -1.12
LIMCH1-215ENST00000512632 HERV-K104P61576 105 aa8.03□□□□□ -1.12
LIMCH1-215ENST00000512632 PPA1Q15181 289 aa8.03□□□□□ -1.12
LIMCH1-215ENST00000512632 IGSF11Q5DX21 431 aa8.03□□□□□ -1.12
LIMCH1-215ENST00000512632 SPIN3Q5JUX0 258 aa8.03□□□□□ -1.12
LIMCH1-215ENST00000512632 ZNF385CQ66K41 422 aaPredicted RBP8.03□□□□□ -1.12
LIMCH1-215ENST00000512632 LYPD6BQ8NI32 183 aa8.03□□□□□ -1.12
LIMCH1-215ENST00000512632 MSI2Q96DH6 328 aaKnown RBP8.03□□□□□ -1.12
LIMCH1-215ENST00000512632 DECR2Q9NUI1 292 aa8.03□□□□□ -1.12
LIMCH1-215ENST00000512632 CA11O75493 328 aa8.02□□□□□ -1.12
LIMCH1-215ENST00000512632 DKK1O94907 266 aa8.02□□□□□ -1.12
LIMCH1-215ENST00000512632 RAB5AP20339 215 aa8.02□□□□□ -1.12
LIMCH1-215ENST00000512632 DUSP1P28562 367 aa8.02□□□□□ -1.12
LIMCH1-215ENST00000512632 SULT1A1P50225 295 aa8.02□□□□□ -1.12
LIMCH1-215ENST00000512632 OSR2Q8N2R0 312 aa8.02□□□□□ -1.12
LIMCH1-215ENST00000512632 SLC35G3Q8N808 338 aa8.02□□□□□ -1.12
LIMCH1-215ENST00000512632 ZNF565Q8N9K5 539 aa8.02□□□□□ -1.12
LIMCH1-215ENST00000512632 SPSB1Q96BD6 273 aa8.02□□□□□ -1.12
LIMCH1-215ENST00000512632 SRXN1Q9BYN0 137 aa8.02□□□□□ -1.12
LIMCH1-215ENST00000512632 EGLN1Q9GZT9 426 aa8.02□□□□□ -1.12
LIMCH1-215ENST00000512632 ZNF700Q9H0M5 742 aa8.02□□□□□ -1.12
LIMCH1-215ENST00000512632 PTRH2Q9Y3E5 179 aaKnown RBP8.02□□□□□ -1.12
LIMCH1-215ENST00000512632 NKX2-6A6NCS4 301 aa8.02□□□□□ -1.13
LIMCH1-215ENST00000512632 H7C1Q1 480 aa8.02□□□□□ -1.13
LIMCH1-215ENST00000512632 ZNF468Q5VIY5 522 aaPredicted RBP8.02□□□□□ -1.13
LIMCH1-215ENST00000512632 FAM27BQ5VT28 67 aa8.02□□□□□ -1.13
LIMCH1-215ENST00000512632 FGFBP3Q8TAT2 258 aa8.02□□□□□ -1.13
LIMCH1-215ENST00000512632 GALNT14Q96FL9 552 aa8.02□□□□□ -1.13
LIMCH1-215ENST00000512632 SYT3Q9BQG1 590 aa8.02□□□□□ -1.13
LIMCH1-215ENST00000512632 BCO1Q9HAY6 547 aa8.02□□□□□ -1.13
LIMCH1-215ENST00000512632 HSPB6O14558 160 aa8.02□□□□□ -1.13
LIMCH1-215ENST00000512632 EIF1BO60739 113 aaKnown RBP8.02□□□□□ -1.13
LIMCH1-215ENST00000512632 GNMTQ14749 295 aa8.02□□□□□ -1.13
LIMCH1-215ENST00000512632 ZNF239Q16600 458 aaKnown RBP8.02□□□□□ -1.13
LIMCH1-215ENST00000512632 ZFP62Q8NB50 900 aaPredicted RBP8.02□□□□□ -1.13
LIMCH1-215ENST00000512632 OR1F12Q8NHA8 337 aa8.02□□□□□ -1.13
LIMCH1-215ENST00000512632 MR1Q95460 341 aa8.02□□□□□ -1.13
LIMCH1-215ENST00000512632 CST7O76096 145 aa8.02□□□□□ -1.13
LIMCH1-215ENST00000512632 NPBWR2P48146 333 aa8.02□□□□□ -1.13
LIMCH1-215ENST00000512632 PCOLCEQ15113 449 aa8.02□□□□□ -1.13
LIMCH1-215ENST00000512632 SOHLH1Q5JUK2 328 aa8.02□□□□□ -1.13
LIMCH1-215ENST00000512632 NCMAPQ5T1S8 102 aa8.02□□□□□ -1.13
LIMCH1-215ENST00000512632 TMEM217Q8N7C4 229 aa8.02□□□□□ -1.13
LIMCH1-215ENST00000512632 SUCNR1Q9BXA5 334 aa8.02□□□□□ -1.13
LIMCH1-215ENST00000512632 ARV1Q9H2C2 271 aa8.02□□□□□ -1.13
LIMCH1-215ENST00000512632 ZNF286AQ9HBT8 521 aa8.02□□□□□ -1.13
LIMCH1-215ENST00000512632 MMP24Q9Y5R2 645 aa8.02□□□□□ -1.13
LIMCH1-215ENST00000512632 VAMP5O95183 116 aa8.01□□□□□ -1.13
LIMCH1-215ENST00000512632 FABP1P07148 127 aa8.01□□□□□ -1.13
LIMCH1-215ENST00000512632 FOLR2P14207 255 aa8.01□□□□□ -1.13
LIMCH1-215ENST00000512632 CCNOP22674 350 aa8.01□□□□□ -1.13
LIMCH1-215ENST00000512632 MRPS34P82930 218 aaKnown RBP8.01□□□□□ -1.13
LIMCH1-215ENST00000512632 EWSR1Q01844 656 aaKnown RBP eCLIP8.01□□□□□ -1.13
LIMCH1-215ENST00000512632 ZNF92Q03936 586 aa8.01□□□□□ -1.13
LIMCH1-215ENST00000512632 HMGN3Q15651 99 aa8.01□□□□□ -1.13
LIMCH1-215ENST00000512632 Q6ZPA2 131 aa8.01□□□□□ -1.13
LIMCH1-215ENST00000512632 OR2G3Q8NGZ4 309 aa8.01□□□□□ -1.13
LIMCH1-215ENST00000512632 GINS3Q9BRX5 216 aa8.01□□□□□ -1.13
LIMCH1-215ENST00000512632 SLC35B3Q9H1N7 401 aa8.01□□□□□ -1.13
LIMCH1-215ENST00000512632 UBE2J1Q9Y385 318 aaPredicted RBP8.01□□□□□ -1.13
LIMCH1-215ENST00000512632 ZNF727A8MUV8 499 aa8.01□□□□□ -1.13
LIMCH1-215ENST00000512632 F10P00742 488 aa8.01□□□□□ -1.13
LIMCH1-215ENST00000512632 LIFP15018 202 aa8.01□□□□□ -1.13
LIMCH1-215ENST00000512632 AGAP20933 346 aa8.01□□□□□ -1.13
LIMCH1-215ENST00000512632 DTYMKP23919 212 aa8.01□□□□□ -1.13
LIMCH1-215ENST00000512632 HIST1H3AP68431 136 aa8.01□□□□□ -1.13
LIMCH1-215ENST00000512632 MALLQ13021 153 aa8.01□□□□□ -1.13
LIMCH1-215ENST00000512632 CNN3Q15417 329 aaKnown RBP8.01□□□□□ -1.13
LIMCH1-215ENST00000512632 HAGHQ16775 308 aa8.01□□□□□ -1.13
LIMCH1-215ENST00000512632 CXorf66Q5JRM2 361 aaPredicted RBP8.01□□□□□ -1.13
LIMCH1-215ENST00000512632 HIST2H3PS2Q5TEC6 136 aa8.01□□□□□ -1.13
LIMCH1-215ENST00000512632 GPR157Q5UAW9 335 aa8.01□□□□□ -1.13
LIMCH1-215ENST00000512632 PLCXD3Q63HM9 321 aa8.01□□□□□ -1.13
LIMCH1-215ENST00000512632 SLC25A26Q70HW3 274 aa8.01□□□□□ -1.13
LIMCH1-215ENST00000512632 HIST2H3AQ71DI3 136 aa8.01□□□□□ -1.13
LIMCH1-215ENST00000512632 CALHM1Q8IU99 346 aa8.01□□□□□ -1.13
LIMCH1-215ENST00000512632 DNASE2BQ8WZ79 361 aa8.01□□□□□ -1.13
LIMCH1-215ENST00000512632 C18orf12Q96KH6 178 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms