RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 MYCNOSP40205 109 aa13.07□□□□□ -0.32
VIM-208ENST00000497849 CDC42P60953 191 aa13.07□□□□□ -0.32
VIM-208ENST00000497849 RPS7P62081 194 aaKnown RBP13.07□□□□□ -0.32
VIM-208ENST00000497849 APOFQ13790 326 aa13.07□□□□□ -0.32
VIM-208ENST00000497849 EIF2B1Q14232 305 aaKnown RBP13.07□□□□□ -0.32
VIM-208ENST00000497849 AADACL4Q5VUY2 407 aa13.07□□□□□ -0.32
VIM-208ENST00000497849 TIGD4Q8IY51 512 aa13.07□□□□□ -0.32
VIM-208ENST00000497849 ZDHHC23Q8IYP9 409 aa13.07□□□□□ -0.32
VIM-208ENST00000497849 OSR2Q8N2R0 312 aa13.07□□□□□ -0.32
VIM-208ENST00000497849 AQP3Q92482 292 aa13.07□□□□□ -0.32
VIM-208ENST00000497849 RCHY1Q96PM5 261 aa13.07□□□□□ -0.32
VIM-208ENST00000497849 APOL4Q9BPW4 351 aa13.07□□□□□ -0.32
VIM-208ENST00000497849 RGCCQ9H4X1 137 aa13.07□□□□□ -0.32
VIM-208ENST00000497849 BRD7Q9NPI1 651 aa13.07□□□□□ -0.32
VIM-208ENST00000497849 IMPAD1Q9NX62 359 aa13.07□□□□□ -0.32
VIM-208ENST00000497849 ZNF732B4DXR9 585 aa13.06□□□□□ -0.32
VIM-208ENST00000497849 SLC1A7O00341 560 aa13.06□□□□□ -0.32
VIM-208ENST00000497849 GNAO1P09471 354 aa13.06□□□□□ -0.32
VIM-208ENST00000497849 IGHV1-8P0DP01 117 aa13.06□□□□□ -0.32
VIM-208ENST00000497849 SLC2A5P22732 501 aa13.06□□□□□ -0.32
VIM-208ENST00000497849 LUMP51884 338 aaPredicted RBP13.06□□□□□ -0.32
VIM-208ENST00000497849 MINOS1Q5TGZ0 78 aa13.06□□□□□ -0.32
VIM-208ENST00000497849 OR2W3Q7Z3T1 314 aa13.06□□□□□ -0.32
VIM-208ENST00000497849 ENTHD1Q8IYW4 607 aa13.06□□□□□ -0.32
VIM-208ENST00000497849 C8orf59Q8N0T1 100 aaPredicted RBP13.06□□□□□ -0.32
VIM-208ENST00000497849 SETD9Q8NE22 299 aa13.06□□□□□ -0.32
VIM-208ENST00000497849 ZNF671Q8TAW3 534 aa13.06□□□□□ -0.32
VIM-208ENST00000497849 ZNF488Q96MN9 340 aa13.06□□□□□ -0.32
VIM-208ENST00000497849 PRRG3Q9BZD7 231 aa13.06□□□□□ -0.32
VIM-208ENST00000497849 PALMDQ9NP74 551 aa13.06□□□□□ -0.32
VIM-208ENST00000497849 RASL12Q9NYN1 266 aa13.06□□□□□ -0.32
VIM-208ENST00000497849 H2AFY2Q9P0M6 372 aaPredicted RBP13.06□□□□□ -0.32
VIM-208ENST00000497849 MINOS1-NBL1R4GNA1 71 aa13.06□□□□□ -0.32
VIM-208ENST00000497849 SELENOFO60613 162 aa13.05□□□□□ -0.32
VIM-208ENST00000497849 ENTPD6O75354 484 aa13.05□□□□□ -0.32
VIM-208ENST00000497849 RBP4P02753 201 aa13.05□□□□□ -0.32
VIM-208ENST00000497849 TK1P04183 234 aa13.05□□□□□ -0.32
VIM-208ENST00000497849 MRPL3P09001 348 aaKnown RBP13.05□□□□□ -0.32
VIM-208ENST00000497849 PGA5P0DJD9 388 aa13.05□□□□□ -0.32
VIM-208ENST00000497849 ZNF728P0DKX0 622 aa13.05□□□□□ -0.32
VIM-208ENST00000497849 GSTT1P30711 240 aa13.05□□□□□ -0.32
VIM-208ENST00000497849 FMO3P31513 532 aa13.05□□□□□ -0.32
VIM-208ENST00000497849 HCCSP53701 268 aa13.05□□□□□ -0.32
VIM-208ENST00000497849 GNG3P63215 75 aa13.05□□□□□ -0.32
VIM-208ENST00000497849 ZNF691Q5VV52 312 aa13.05□□□□□ -0.32
VIM-208ENST00000497849 MEPCEQ7L2J0 689 aaKnown RBP13.05□□□□□ -0.32
VIM-208ENST00000497849 ZNF329Q86UD4 541 aa13.05□□□□□ -0.32
VIM-208ENST00000497849 OR8J1Q8NGP2 316 aa13.05□□□□□ -0.32
VIM-208ENST00000497849 RNF133Q8WVZ7 376 aa13.05□□□□□ -0.32
VIM-208ENST00000497849 PGAM5Q96HS1 289 aa13.05□□□□□ -0.32
VIM-208ENST00000497849 AKR1E2Q96JD6 320 aa13.05□□□□□ -0.32
VIM-208ENST00000497849 NR1H4Q96RI1 486 aaPredicted RBP13.05□□□□□ -0.32
VIM-208ENST00000497849 AMELYQ99218 206 aa13.05□□□□□ -0.32
VIM-208ENST00000497849 TEAD3Q99594 435 aa13.05□□□□□ -0.32
VIM-208ENST00000497849 SLC25A33Q9BSK2 321 aa13.05□□□□□ -0.32
VIM-208ENST00000497849 PSMB11A5LHX3 300 aa13.04□□□□□ -0.32
VIM-208ENST00000497849 H3BUI4 141 aa13.04□□□□□ -0.32
VIM-208ENST00000497849 APOL3O95236 402 aa13.04□□□□□ -0.32
VIM-208ENST00000497849 APOC1P02654 83 aa13.04□□□□□ -0.32
VIM-208ENST00000497849 GABRB1P18505 474 aa13.04□□□□□ -0.32
VIM-208ENST00000497849 SNRPGP62308 76 aaKnown RBP13.04□□□□□ -0.32
VIM-208ENST00000497849 ACTA2P62736 377 aa13.04□□□□□ -0.32
VIM-208ENST00000497849 ACTG2P63267 376 aa13.04□□□□□ -0.32
VIM-208ENST00000497849 ACTC1P68032 377 aa13.04□□□□□ -0.32
VIM-208ENST00000497849 ACTA1P68133 377 aa13.04□□□□□ -0.32
VIM-208ENST00000497849 SMIM21Q3B7S5 101 aa13.04□□□□□ -0.32
VIM-208ENST00000497849 CEP78Q5JTW2 689 aa13.04□□□□□ -0.32
VIM-208ENST00000497849 HAGHLQ6PII5 290 aaPredicted RBP13.04□□□□□ -0.32
VIM-208ENST00000497849 KRT74Q7RTS7 529 aa13.04□□□□□ -0.32
VIM-208ENST00000497849 ERI1Q8IV48 349 aaKnown RBP13.04□□□□□ -0.32
VIM-208ENST00000497849 POC1AQ8NBT0 407 aa13.04□□□□□ -0.32
VIM-208ENST00000497849 RHOXF1Q8NHV9 184 aa13.04□□□□□ -0.32
VIM-208ENST00000497849 NDNFQ8TB73 568 aa13.04□□□□□ -0.32
VIM-208ENST00000497849 DUX3Q96PT4 197 aa13.04□□□□□ -0.32
VIM-208ENST00000497849 HIST1H2AAQ96QV6 131 aa13.04□□□□□ -0.32
VIM-208ENST00000497849 OR8B4Q96RC9 309 aa13.04□□□□□ -0.32
VIM-208ENST00000497849 ABHD6Q9BV23 337 aa13.04□□□□□ -0.32
VIM-208ENST00000497849 HSPE1-MOB4S4R3N1 261 aa13.04□□□□□ -0.32
VIM-208ENST00000497849 OR2F2O95006 317 aa13.03□□□□□ -0.32
VIM-208ENST00000497849 SNRNP70P08621 437 aaKnown RBP13.03□□□□□ -0.32
VIM-208ENST00000497849 OPRL1P41146 370 aa13.03□□□□□ -0.32
VIM-208ENST00000497849 CEACAM21Q3KPI0 293 aa13.03□□□□□ -0.32
VIM-208ENST00000497849 NXNL2Q5VZ03 156 aa13.03□□□□□ -0.32
VIM-208ENST00000497849 ZFAND6Q6FIF0 208 aa13.03□□□□□ -0.32
VIM-208ENST00000497849 KCTD18Q6PI47 426 aaPredicted RBP13.03□□□□□ -0.32
VIM-208ENST00000497849 SHFQ7M4L6 423 aa13.03□□□□□ -0.32
VIM-208ENST00000497849 TCF23Q7RTU1 214 aa13.03□□□□□ -0.32
VIM-208ENST00000497849 SBSPONQ8IVN8 264 aa13.03□□□□□ -0.32
VIM-208ENST00000497849 CNIH3Q8TBE1 160 aa13.03□□□□□ -0.32
VIM-208ENST00000497849 APH1BQ8WW43 257 aa13.03□□□□□ -0.32
VIM-208ENST00000497849 TRUB1Q8WWH5 349 aaKnown RBP13.03□□□□□ -0.32
VIM-208ENST00000497849 RBM14Q96PK6 669 aaKnown RBP13.03□□□□□ -0.32
VIM-208ENST00000497849 AMBNQ9NP70 447 aa13.03□□□□□ -0.32
VIM-208ENST00000497849 PLECQ15149 4684 aaKnown RBP13.03□□□□□ -0.32
VIM-208ENST00000497849 IGHV2-26A0A0B4J1V2 119 aa13.02□□□□□ -0.33
VIM-208ENST00000497849 PRODHO43272 600 aa13.02□□□□□ -0.33
VIM-208ENST00000497849 WBP4O75554 376 aaKnown RBP13.02□□□□□ -0.33
VIM-208ENST00000497849 RPSAP08865 295 aaKnown RBP13.02□□□□□ -0.33
VIM-208ENST00000497849 SLC6A1P30531 599 aa13.02□□□□□ -0.33
VIM-208ENST00000497849 ECI1P42126 302 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms