RNA–Protein interactions for RNA: ENST00000494973.1

APTX-231, Transcript of aprataxin, human

TSL 4

Gene APTX, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-231	ENST00000494973	IKZF1	Q13422	519 aa		11.38	□□□□□ -0.59
APTX-231	ENST00000494973	RBM39	Q14498	530 aa	Known RBP	11.38	□□□□□ -0.59
APTX-231	ENST00000494973	DEFB113	Q30KQ7	82 aa		11.38	□□□□□ -0.59
APTX-231	ENST00000494973	TMEM155	Q4W5P6	130 aa		11.38	□□□□□ -0.59
APTX-231	ENST00000494973	SPRN	Q5BIV9	151 aa		11.38	□□□□□ -0.59
APTX-231	ENST00000494973	SPANXN2	Q5MJ10	180 aa		11.38	□□□□□ -0.59
APTX-231	ENST00000494973	METAP1D	Q6UB28	335 aa	Predicted RBP	11.38	□□□□□ -0.59
APTX-231	ENST00000494973	SLC36A1	Q7Z2H8	476 aa		11.38	□□□□□ -0.59
APTX-231	ENST00000494973	FAM89B	Q8N5H3	189 aa		11.38	□□□□□ -0.59
APTX-231	ENST00000494973	BOLL	Q8N9W6	283 aa	Known RBP	11.38	□□□□□ -0.59
APTX-231	ENST00000494973	OR5H6	Q8NGV6	325 aa		11.38	□□□□□ -0.59
APTX-231	ENST00000494973	S100Z	Q8WXG8	99 aa		11.38	□□□□□ -0.59
APTX-231	ENST00000494973	SLC25A38	Q96DW6	304 aa		11.38	□□□□□ -0.59
APTX-231	ENST00000494973	ZNF488	Q96MN9	340 aa		11.38	□□□□□ -0.59
APTX-231	ENST00000494973	PIMREG	Q9BSJ6	248 aa		11.38	□□□□□ -0.59
APTX-231	ENST00000494973	LPAR5	Q9H1C0	372 aa		11.38	□□□□□ -0.59
APTX-231	ENST00000494973	BANF2	Q9H503	90 aa		11.38	□□□□□ -0.59
APTX-231	ENST00000494973	WIPI2	Q9Y4P8	454 aa		11.38	□□□□□ -0.59
APTX-231	ENST00000494973	AKAP6	Q13023	2319 aa		11.37	□□□□□ -0.59
APTX-231	ENST00000494973	PPIH	O43447	177 aa	Known RBP	11.37	□□□□□ -0.59
APTX-231	ENST00000494973	HPGDS	O60760	199 aa		11.37	□□□□□ -0.59
APTX-231	ENST00000494973	ZNF44	P15621	663 aa		11.37	□□□□□ -0.59
APTX-231	ENST00000494973	EGR1	P18146	543 aa		11.37	□□□□□ -0.59
APTX-231	ENST00000494973	PTBP1	P26599	531 aa	Known RBP eCLIP	11.37	□□□□□ -0.59	3e-8	■■■■■ 34.1
APTX-231	ENST00000494973	GIF	P27352	417 aa		11.37	□□□□□ -0.59
APTX-231	ENST00000494973	CD80	P33681	288 aa		11.37	□□□□□ -0.59
APTX-231	ENST00000494973	MNDA	P41218	407 aa		11.37	□□□□□ -0.59
APTX-231	ENST00000494973	PITPNA	Q00169	270 aa		11.37	□□□□□ -0.59
APTX-231	ENST00000494973	TMEM69	Q5SWH9	247 aa		11.37	□□□□□ -0.59
APTX-231	ENST00000494973	STUM	Q69YW2	141 aa		11.37	□□□□□ -0.59
APTX-231	ENST00000494973	OR10K2	Q6IF99	312 aa		11.37	□□□□□ -0.59
APTX-231	ENST00000494973	DCDC5	Q6ZRR9	648 aa		11.37	□□□□□ -0.59
APTX-231	ENST00000494973	ZNF561	Q8N587	486 aa		11.37	□□□□□ -0.59
APTX-231	ENST00000494973	OR6Q1	Q8NGQ2	317 aa		11.37	□□□□□ -0.59
APTX-231	ENST00000494973	OR10R2	Q8NGX6	335 aa		11.37	□□□□□ -0.59
APTX-231	ENST00000494973	YIPF5	Q969M3	257 aa		11.37	□□□□□ -0.59
APTX-231	ENST00000494973	RAB3C	Q96E17	227 aa		11.37	□□□□□ -0.59
APTX-231	ENST00000494973	MED30	Q96HR3	178 aa		11.37	□□□□□ -0.59
APTX-231	ENST00000494973	DIRAS2	Q96HU8	199 aa		11.37	□□□□□ -0.59
APTX-231	ENST00000494973	LURAP1	Q96LR2	239 aa		11.37	□□□□□ -0.59
APTX-231	ENST00000494973	ZNF665	Q9H7R5	613 aa		11.37	□□□□□ -0.59
APTX-231	ENST00000494973	EXTL2	Q9UBQ6	330 aa		11.37	□□□□□ -0.59
APTX-231	ENST00000494973	HSF4	Q9ULV5	492 aa		11.37	□□□□□ -0.59
APTX-231	ENST00000494973	USF3	Q68DE3	2245 aa		11.37	□□□□□ -0.59
APTX-231	ENST00000494973		A0A1W2PP11	408 aa		11.36	□□□□□ -0.59
APTX-231	ENST00000494973	SERPINE3	A8MV23	424 aa		11.36	□□□□□ -0.59
APTX-231	ENST00000494973	C3orf80	F5H4A9	247 aa		11.36	□□□□□ -0.59
APTX-231	ENST00000494973	ANKHD1-EIF4EBP3	H7C0V5	636 aa	Predicted RBP	11.36	□□□□□ -0.59
APTX-231	ENST00000494973		H7C1Q1	480 aa		11.36	□□□□□ -0.59
APTX-231	ENST00000494973	CTDSP2	O14595	271 aa		11.36	□□□□□ -0.59
APTX-231	ENST00000494973	GEMIN2	O14893	280 aa	Known RBP	11.36	□□□□□ -0.59
APTX-231	ENST00000494973	DEGS1	O15121	323 aa		11.36	□□□□□ -0.59
APTX-231	ENST00000494973	XRCC3	O43542	346 aa		11.36	□□□□□ -0.59
APTX-231	ENST00000494973	SSX4	O60224	188 aa		11.36	□□□□□ -0.59
APTX-231	ENST00000494973	PDCD6	O75340	191 aa		11.36	□□□□□ -0.59
APTX-231	ENST00000494973	CA11	O75493	328 aa		11.36	□□□□□ -0.59
APTX-231	ENST00000494973	GSTP1	P09211	210 aa	Known RBP	11.36	□□□□□ -0.59
APTX-231	ENST00000494973	FUT3	P21217	361 aa		11.36	□□□□□ -0.59
APTX-231	ENST00000494973	GABRR1	P24046	479 aa		11.36	□□□□□ -0.59
APTX-231	ENST00000494973	COL8A2	P25067	703 aa		11.36	□□□□□ -0.59
APTX-231	ENST00000494973	GMFB	P60983	142 aa		11.36	□□□□□ -0.59
APTX-231	ENST00000494973	MRPS10	P82664	201 aa	Known RBP	11.36	□□□□□ -0.59
APTX-231	ENST00000494973	MRPS15	P82914	257 aa	Known RBP	11.36	□□□□□ -0.59
APTX-231	ENST00000494973	CARTPT	Q16568	116 aa		11.36	□□□□□ -0.59
APTX-231	ENST00000494973	TAF9	Q16594	264 aa		11.36	□□□□□ -0.59
APTX-231	ENST00000494973	PIGY	Q3MUY2	71 aa		11.36	□□□□□ -0.59
APTX-231	ENST00000494973	ATPAF1	Q5TC12	328 aa	Predicted RBP	11.36	□□□□□ -0.59
APTX-231	ENST00000494973	SHE	Q5VZ18	495 aa		11.36	□□□□□ -0.59
APTX-231	ENST00000494973	NLRC3	Q7RTR2	1065 aa		11.36	□□□□□ -0.59
APTX-231	ENST00000494973	LAX1	Q8IWV1	398 aa		11.36	□□□□□ -0.59
APTX-231	ENST00000494973	CMTM4	Q8IZR5	234 aa		11.36	□□□□□ -0.59
APTX-231	ENST00000494973	FAM168A	Q92567	244 aa		11.36	□□□□□ -0.59
APTX-231	ENST00000494973	PERP	Q96FX8	193 aa		11.36	□□□□□ -0.59
APTX-231	ENST00000494973	FAM234A	Q9H0X4	552 aa		11.36	□□□□□ -0.59
APTX-231	ENST00000494973	WDR13	Q9H1Z4	485 aa		11.36	□□□□□ -0.59
APTX-231	ENST00000494973	EXOSC5	Q9NQT4	235 aa	Known RBP eCLIP	11.36	□□□□□ -0.59
APTX-231	ENST00000494973	TREM2	Q9NZC2	230 aa		11.36	□□□□□ -0.59
APTX-231	ENST00000494973	RCC2	Q9P258	522 aa	Known RBP	11.36	□□□□□ -0.59
APTX-231	ENST00000494973	OR14J1	Q9UGF5	321 aa		11.36	□□□□□ -0.59
APTX-231	ENST00000494973	CACNG2	Q9Y698	323 aa		11.36	□□□□□ -0.59
APTX-231	ENST00000494973	SPG11	Q96JI7	2443 aa		11.36	□□□□□ -0.59
APTX-231	ENST00000494973	FUOM	A2VDF0	154 aa		11.35	□□□□□ -0.59
APTX-231	ENST00000494973	ISPD	A4D126	451 aa		11.35	□□□□□ -0.59
APTX-231	ENST00000494973	RFPL4A	A6NLU0	287 aa		11.35	□□□□□ -0.59
APTX-231	ENST00000494973	POM121C	A8CG34	1229 aa		11.35	□□□□□ -0.59
APTX-231	ENST00000494973	MCRIP1	C9JLW8	97 aa		11.35	□□□□□ -0.59
APTX-231	ENST00000494973	RFPL4AL1	F8VTS6	287 aa		11.35	□□□□□ -0.59
APTX-231	ENST00000494973		F8VVB4	439 aa		11.35	□□□□□ -0.59
APTX-231	ENST00000494973		F8VWA3	439 aa		11.35	□□□□□ -0.59
APTX-231	ENST00000494973	WNT9B	O14905	357 aa		11.35	□□□□□ -0.59
APTX-231	ENST00000494973	IGHV2-70	P01814	119 aa		11.35	□□□□□ -0.59
APTX-231	ENST00000494973	EIF4E	P06730	217 aa	Known RBP	11.35	□□□□□ -0.59
APTX-231	ENST00000494973	HEXA	P06865	529 aa		11.35	□□□□□ -0.59
APTX-231	ENST00000494973	PSG2	P11465	335 aa		11.35	□□□□□ -0.59
APTX-231	ENST00000494973	ELK1	P19419	428 aa		11.35	□□□□□ -0.59
APTX-231	ENST00000494973	LMO1	P25800	156 aa		11.35	□□□□□ -0.59
APTX-231	ENST00000494973	BLVRB	P30043	206 aa	Predicted RBP	11.35	□□□□□ -0.59
APTX-231	ENST00000494973	PRDX2	P32119	198 aa		11.35	□□□□□ -0.59
APTX-231	ENST00000494973	ETV6	P41212	452 aa		11.35	□□□□□ -0.59
APTX-231	ENST00000494973	VEGFC	P49767	419 aa		11.35	□□□□□ -0.59

Retrieved 100 of 20,778 RNA–protein pairs in 36 ms