RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 TMEM155Q4W5P6 130 aa11.64□□□□□ -0.55
C9orf3-221ENST00000489562 DNM1P46Q6ZS02 220 aa11.64□□□□□ -0.55
C9orf3-221ENST00000489562 LRRC28Q86X40 367 aaPredicted RBP11.64□□□□□ -0.55
C9orf3-221ENST00000489562 TMEM104Q8NE00 496 aa11.64□□□□□ -0.55
C9orf3-221ENST00000489562 C10orf105Q8TEF2 133 aa11.64□□□□□ -0.55
C9orf3-221ENST00000489562 FAM46BQ96A09 425 aa11.64□□□□□ -0.55
C9orf3-221ENST00000489562 Q96M66 194 aa11.64□□□□□ -0.55
C9orf3-221ENST00000489562 TM2D1Q9BX74 207 aa11.64□□□□□ -0.55
C9orf3-221ENST00000489562 SELENOIQ9C0D9 397 aa11.64□□□□□ -0.55
C9orf3-221ENST00000489562 SLIRPQ9GZT3 109 aaKnown RBP11.64□□□□□ -0.55
C9orf3-221ENST00000489562 BANF2Q9H503 90 aa11.64□□□□□ -0.55
C9orf3-221ENST00000489562 ST3GAL6Q9Y274 331 aa11.64□□□□□ -0.55
C9orf3-221ENST00000489562 WIPI2Q9Y4P8 454 aa11.64□□□□□ -0.55
C9orf3-221ENST00000489562 A0A1W2PP11 408 aa11.63□□□□□ -0.55
C9orf3-221ENST00000489562 METTL21EPA6NDL7 271 aa11.63□□□□□ -0.55
C9orf3-221ENST00000489562 NKX6-3A6NJ46 265 aa11.63□□□□□ -0.55
C9orf3-221ENST00000489562 SH2D1BO14796 132 aa11.63□□□□□ -0.55
C9orf3-221ENST00000489562 ART1P52961 327 aa11.63□□□□□ -0.55
C9orf3-221ENST00000489562 ZMYND11Q15326 602 aa11.63□□□□□ -0.55
C9orf3-221ENST00000489562 CLEC12BQ2HXU8 276 aa11.63□□□□□ -0.55
C9orf3-221ENST00000489562 FAM201AQ5SY85 155 aa11.63□□□□□ -0.55
C9orf3-221ENST00000489562 ATPAF1Q5TC12 328 aaPredicted RBP11.63□□□□□ -0.55
C9orf3-221ENST00000489562 SHEQ5VZ18 495 aa11.63□□□□□ -0.55
C9orf3-221ENST00000489562 STUMQ69YW2 141 aa11.63□□□□□ -0.55
C9orf3-221ENST00000489562 SFRP4Q6FHJ7 346 aaPredicted RBP11.63□□□□□ -0.55
C9orf3-221ENST00000489562 DCDC5Q6ZRR9 648 aa11.63□□□□□ -0.55
C9orf3-221ENST00000489562 BATF2Q8N1L9 274 aa11.63□□□□□ -0.55
C9orf3-221ENST00000489562 SPICQ8N5J4 248 aa11.63□□□□□ -0.55
C9orf3-221ENST00000489562 CHST4Q8NCG5 386 aa11.63□□□□□ -0.55
C9orf3-221ENST00000489562 MCFD2Q8NI22 146 aa11.63□□□□□ -0.55
C9orf3-221ENST00000489562 ANGPTL6Q8NI99 470 aa11.63□□□□□ -0.55
C9orf3-221ENST00000489562 FOXC2Q99958 501 aa11.63□□□□□ -0.55
C9orf3-221ENST00000489562 NXF2Q9GZY0 626 aaKnown RBP11.63□□□□□ -0.55
C9orf3-221ENST00000489562 MMP27Q9H306 513 aa11.63□□□□□ -0.55
C9orf3-221ENST00000489562 KCNK15Q9H427 330 aa11.63□□□□□ -0.55
C9orf3-221ENST00000489562 IFT22Q9H7X7 185 aa11.63□□□□□ -0.55
C9orf3-221ENST00000489562 SPACA1Q9HBV2 294 aa11.63□□□□□ -0.55
C9orf3-221ENST00000489562 TMEM165Q9HC07 324 aa11.63□□□□□ -0.55
C9orf3-221ENST00000489562 RHBDL2Q9NX52 303 aa11.63□□□□□ -0.55
C9orf3-221ENST00000489562 PRRC2AP48634 2157 aaKnown RBP11.62□□□□□ -0.55
C9orf3-221ENST00000489562 IGHV3OR15-7A0A075B7D8 119 aa11.62□□□□□ -0.55
C9orf3-221ENST00000489562 ISPDA4D126 451 aa11.62□□□□□ -0.55
C9orf3-221ENST00000489562 RFPL4AA6NLU0 287 aa11.62□□□□□ -0.55
C9orf3-221ENST00000489562 RFPL4AL1F8VTS6 287 aa11.62□□□□□ -0.55
C9orf3-221ENST00000489562 HAND1O96004 215 aa11.62□□□□□ -0.55
C9orf3-221ENST00000489562 CHRM2P08172 466 aa11.62□□□□□ -0.55
C9orf3-221ENST00000489562 PSG2P11465 335 aa11.62□□□□□ -0.55
C9orf3-221ENST00000489562 SLC25A16P16260 332 aa11.62□□□□□ -0.55
C9orf3-221ENST00000489562 CNPY1Q3B7I2 92 aa11.62□□□□□ -0.55
C9orf3-221ENST00000489562 PIGYQ3MUY2 71 aa11.62□□□□□ -0.55
C9orf3-221ENST00000489562 UBE2NLQ5JXB2 153 aa11.62□□□□□ -0.55
C9orf3-221ENST00000489562 Q5PR19 223 aa11.62□□□□□ -0.55
C9orf3-221ENST00000489562 OR10K2Q6IF99 312 aa11.62□□□□□ -0.55
C9orf3-221ENST00000489562 RAB12Q6IQ22 244 aa11.62□□□□□ -0.55
C9orf3-221ENST00000489562 SLC36A1Q7Z2H8 476 aa11.62□□□□□ -0.55
C9orf3-221ENST00000489562 LURAP1LQ8IV03 231 aa11.62□□□□□ -0.55
C9orf3-221ENST00000489562 FAM89BQ8N5H3 189 aa11.62□□□□□ -0.55
C9orf3-221ENST00000489562 SAMD12Q8N8I0 201 aa11.62□□□□□ -0.55
C9orf3-221ENST00000489562 DEFB108BQ8NET1 73 aa11.62□□□□□ -0.55
C9orf3-221ENST00000489562 OR56B1Q8NGI3 324 aa11.62□□□□□ -0.55
C9orf3-221ENST00000489562 OR5H6Q8NGV6 325 aa11.62□□□□□ -0.55
C9orf3-221ENST00000489562 RAB40AQ8WXH6 277 aa11.62□□□□□ -0.55
C9orf3-221ENST00000489562 PHF21AQ96BD5 680 aa11.62□□□□□ -0.55
C9orf3-221ENST00000489562 MED30Q96HR3 178 aa11.62□□□□□ -0.55
C9orf3-221ENST00000489562 TMEM246Q9BRR3 403 aa11.62□□□□□ -0.55
C9orf3-221ENST00000489562 LPAR5Q9H1C0 372 aa11.62□□□□□ -0.55
C9orf3-221ENST00000489562 ABCG5Q9H222 651 aa11.62□□□□□ -0.55
C9orf3-221ENST00000489562 ZNF665Q9H7R5 613 aa11.62□□□□□ -0.55
C9orf3-221ENST00000489562 COMMD3Q9UBI1 195 aa11.62□□□□□ -0.55
C9orf3-221ENST00000489562 KAAG1Q9UBP8 84 aa11.62□□□□□ -0.55
C9orf3-221ENST00000489562 OR14J1Q9UGF5 321 aa11.62□□□□□ -0.55
C9orf3-221ENST00000489562 ZNF222Q9UK12 451 aa11.62□□□□□ -0.55
C9orf3-221ENST00000489562 ADAM30Q9UKF2 790 aa11.62□□□□□ -0.55
C9orf3-221ENST00000489562 IGKV1D-17A0A075B6S4 117 aa11.61□□□□□ -0.55
C9orf3-221ENST00000489562 A0A0A6YYH2 397 aa11.61□□□□□ -0.55
C9orf3-221ENST00000489562 A6NJ64 397 aa11.61□□□□□ -0.55
C9orf3-221ENST00000489562 VWC2LB2RUY7 222 aa11.61□□□□□ -0.55
C9orf3-221ENST00000489562 GEMIN2O14893 280 aaKnown RBP11.61□□□□□ -0.55
C9orf3-221ENST00000489562 OR7C1O76099 320 aaPredicted RBP11.61□□□□□ -0.55
C9orf3-221ENST00000489562 ZNF205O95201 554 aa11.61□□□□□ -0.55
C9orf3-221ENST00000489562 APOA1P02647 267 aa11.61□□□□□ -0.55
C9orf3-221ENST00000489562 ZNF44P15621 663 aa11.61□□□□□ -0.55
C9orf3-221ENST00000489562 PRDX2P32119 198 aa11.61□□□□□ -0.55
C9orf3-221ENST00000489562 NR4A2P43354 598 aa11.61□□□□□ -0.55
C9orf3-221ENST00000489562 IKZF1Q13422 519 aa11.61□□□□□ -0.55
C9orf3-221ENST00000489562 AVPI1Q5T686 147 aa11.61□□□□□ -0.55
C9orf3-221ENST00000489562 ZNF788Q6ZQV5 615 aa11.61□□□□□ -0.55
C9orf3-221ENST00000489562 ZNF561Q8N587 486 aa11.61□□□□□ -0.55
C9orf3-221ENST00000489562 C19orf18Q8NEA5 215 aa11.61□□□□□ -0.55
C9orf3-221ENST00000489562 PPP1R35Q8TAP8 253 aa11.61□□□□□ -0.55
C9orf3-221ENST00000489562 SLC25A38Q96DW6 304 aa11.61□□□□□ -0.55
C9orf3-221ENST00000489562 SEH1LQ96EE3 360 aa11.61□□□□□ -0.55
C9orf3-221ENST00000489562 SDSLQ96GA7 329 aa11.61□□□□□ -0.55
C9orf3-221ENST00000489562 GAL3ST1Q99999 423 aa11.61□□□□□ -0.55
C9orf3-221ENST00000489562 NUDT16L1Q9BRJ7 211 aaKnown RBP11.61□□□□□ -0.55
C9orf3-221ENST00000489562 BPESC1Q9GZL8 116 aa11.61□□□□□ -0.55
C9orf3-221ENST00000489562 PTTG2Q9NZH5 202 aa11.61□□□□□ -0.55
C9orf3-221ENST00000489562 IL36RNQ9UBH0 155 aa11.61□□□□□ -0.55
C9orf3-221ENST00000489562 MIOXQ9UGB7 285 aa11.61□□□□□ -0.55
C9orf3-221ENST00000489562 DSCAML1Q8TD84 2053 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms