RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 ADAMTSL3P82987 1691 aa1.31□□□□□ -2.2
PTPN4-212ENST00000488896 ZNF729A6NN14 1252 aaPredicted RBP1.3□□□□□ -2.2
PTPN4-212ENST00000488896 M0R1B8 84 aa1.3□□□□□ -2.2
PTPN4-212ENST00000488896 RNF113AO15541 343 aaKnown RBP1.3□□□□□ -2.2
PTPN4-212ENST00000488896 ETHE1O95571 254 aa1.3□□□□□ -2.2
PTPN4-212ENST00000488896 IFFO1Q0D2I5 559 aa1.3□□□□□ -2.2
PTPN4-212ENST00000488896 ATP6V1FQ16864 119 aa1.3□□□□□ -2.2
PTPN4-212ENST00000488896 NDUFAF6Q330K2 333 aa1.3□□□□□ -2.2
PTPN4-212ENST00000488896 CLLU1OSQ5K130 101 aa1.3□□□□□ -2.2
PTPN4-212ENST00000488896 ZNF322Q6U7Q0 402 aaPredicted RBP1.3□□□□□ -2.2
PTPN4-212ENST00000488896 COMTD1Q86VU5 262 aa1.3□□□□□ -2.2
PTPN4-212ENST00000488896 AMN1Q8IY45 258 aa1.3□□□□□ -2.2
PTPN4-212ENST00000488896 ZNF567Q8N184 647 aa1.3□□□□□ -2.2
PTPN4-212ENST00000488896 TOP1MTQ969P6 601 aa1.3□□□□□ -2.2
PTPN4-212ENST00000488896 TRIB3Q96RU7 358 aa1.3□□□□□ -2.2
PTPN4-212ENST00000488896 METTL26Q96S19 204 aa1.3□□□□□ -2.2
PTPN4-212ENST00000488896 TSNAXQ99598 290 aaKnown RBP1.3□□□□□ -2.2
PTPN4-212ENST00000488896 ANP32EQ9BTT0 268 aa1.3□□□□□ -2.2
PTPN4-212ENST00000488896 SHCBP1LQ9BZQ2 653 aa1.3□□□□□ -2.2
PTPN4-212ENST00000488896 SRRQ9GZT4 340 aa1.3□□□□□ -2.2
PTPN4-212ENST00000488896 COA1Q9GZY4 146 aa1.3□□□□□ -2.2
PTPN4-212ENST00000488896 FBXO44Q9H4M3 255 aa1.3□□□□□ -2.2
PTPN4-212ENST00000488896 CRLF2Q9HC73 371 aa1.3□□□□□ -2.2
PTPN4-212ENST00000488896 RBM22Q9NW64 420 aaKnown RBP eCLIP1.3□□□□□ -2.2
PTPN4-212ENST00000488896 RABL2AQ9UBK7 228 aaPredicted RBP1.3□□□□□ -2.2
PTPN4-212ENST00000488896 SLC7A11Q9UPY5 501 aa1.3□□□□□ -2.2
PTPN4-212ENST00000488896 INSIG2Q9Y5U4 225 aa1.3□□□□□ -2.2
PTPN4-212ENST00000488896 ZNF706Q9Y5V0 76 aaPredicted RBP1.3□□□□□ -2.2
PTPN4-212ENST00000488896 LOC389332A0A1B0GUA5 103 aa1.29□□□□□ -2.2
PTPN4-212ENST00000488896 GMNCA6NCL1 334 aa1.29□□□□□ -2.2
PTPN4-212ENST00000488896 H7C2Y5 167 aa1.29□□□□□ -2.2
PTPN4-212ENST00000488896 K7EPK0 472 aa1.29□□□□□ -2.2
PTPN4-212ENST00000488896 IGKV1D-33P01593 117 aa1.29□□□□□ -2.2
PTPN4-212ENST00000488896 IGKV1-33P01594 117 aa1.29□□□□□ -2.2
PTPN4-212ENST00000488896 NUDT2P50583 147 aa1.29□□□□□ -2.2
PTPN4-212ENST00000488896 SLC18A1P54219 525 aa1.29□□□□□ -2.2
PTPN4-212ENST00000488896 TOMM34Q15785 309 aaPredicted RBP1.29□□□□□ -2.2
PTPN4-212ENST00000488896 SSX1Q16384 188 aa1.29□□□□□ -2.2
PTPN4-212ENST00000488896 ZNF404Q494X3 552 aa1.29□□□□□ -2.2
PTPN4-212ENST00000488896 DUPD1Q68J44 220 aa1.29□□□□□ -2.2
PTPN4-212ENST00000488896 ZFP82Q8N141 532 aa1.29□□□□□ -2.2
PTPN4-212ENST00000488896 OR51L1Q8NGJ5 315 aa1.29□□□□□ -2.2
PTPN4-212ENST00000488896 CENPNQ96H22 339 aaPredicted RBP1.29□□□□□ -2.2
PTPN4-212ENST00000488896 QKIQ96PU8 341 aaKnown RBP eCLIP1.29□□□□□ -2.2
PTPN4-212ENST00000488896 TXNIPQ9H3M7 391 aa1.29□□□□□ -2.2
PTPN4-212ENST00000488896 RPRD1BQ9NQG5 326 aaKnown RBP1.29□□□□□ -2.2
PTPN4-212ENST00000488896 TAC3Q9UHF0 121 aa1.29□□□□□ -2.2
PTPN4-212ENST00000488896 CFL2Q9Y281 166 aa1.29□□□□□ -2.2
PTPN4-212ENST00000488896 MROH5Q6ZUA9 1318 aa1.29□□□□□ -2.2
PTPN4-212ENST00000488896 IGHV3-21A0A0B4J1V1 117 aa1.28□□□□□ -2.2
PTPN4-212ENST00000488896 IGHV3-43A0A0B4J1X8 118 aa1.28□□□□□ -2.2
PTPN4-212ENST00000488896 A8MWP4 228 aa1.28□□□□□ -2.2
PTPN4-212ENST00000488896 RGS5O15539 181 aa1.28□□□□□ -2.2
PTPN4-212ENST00000488896 ALOX12BO75342 701 aa1.28□□□□□ -2.2
PTPN4-212ENST00000488896 CGB3P0DN86 165 aa1.28□□□□□ -2.2
PTPN4-212ENST00000488896 CGB7P0DN87 165 aa1.28□□□□□ -2.2
PTPN4-212ENST00000488896 PTHLHP12272 177 aa1.28□□□□□ -2.2
PTPN4-212ENST00000488896 MSR1P21757 451 aa1.28□□□□□ -2.2
PTPN4-212ENST00000488896 P2RY2P41231 377 aa1.28□□□□□ -2.2
PTPN4-212ENST00000488896 CCL23P55773 120 aa1.28□□□□□ -2.2
PTPN4-212ENST00000488896 TAS2R60P59551 318 aa1.28□□□□□ -2.2
PTPN4-212ENST00000488896 PSMC5P62195 406 aa1.28□□□□□ -2.2
PTPN4-212ENST00000488896 DYNC1I2Q13409 638 aaKnown RBP1.28□□□□□ -2.2
PTPN4-212ENST00000488896 LINC00596Q86U02 117 aa1.28□□□□□ -2.2
PTPN4-212ENST00000488896 MSRB3Q8IXL7 192 aa1.28□□□□□ -2.2
PTPN4-212ENST00000488896 OR4A15Q8NGL6 344 aa1.28□□□□□ -2.2
PTPN4-212ENST00000488896 UBA3Q8TBC4 463 aa1.28□□□□□ -2.2
PTPN4-212ENST00000488896 C2orf15Q8WU43 125 aaKnown RBP1.28□□□□□ -2.2
PTPN4-212ENST00000488896 C22orf15Q8WYQ4 148 aa1.28□□□□□ -2.2
PTPN4-212ENST00000488896 SLC38A1Q9H2H9 487 aa1.28□□□□□ -2.2
PTPN4-212ENST00000488896 MRPL16Q9NX20 251 aaKnown RBP1.28□□□□□ -2.2
PTPN4-212ENST00000488896 RBM12B-AS1Q9P1G2 102 aa1.28□□□□□ -2.2
PTPN4-212ENST00000488896 ZNF443Q9Y2A4 671 aaPredicted RBP1.28□□□□□ -2.2
PTPN4-212ENST00000488896 ZNF780BQ9Y6R6 833 aa1.28□□□□□ -2.2
PTPN4-212ENST00000488896 KMT2EQ8IZD2 1858 aa1.28□□□□□ -2.2
PTPN4-212ENST00000488896 TRAV8-7A0A075B6U6 113 aa1.27□□□□□ -2.21
PTPN4-212ENST00000488896 TVP23AA6NH52 213 aa1.27□□□□□ -2.21
PTPN4-212ENST00000488896 F5H5P2 479 aa1.27□□□□□ -2.21
PTPN4-212ENST00000488896 G3V3Q6 166 aa1.27□□□□□ -2.21
PTPN4-212ENST00000488896 K7EN84 100 aa1.27□□□□□ -2.21
PTPN4-212ENST00000488896 K7ERS5 55 aa1.27□□□□□ -2.21
PTPN4-212ENST00000488896 FFAR1O14842 300 aa1.27□□□□□ -2.21
PTPN4-212ENST00000488896 SLC31A1O15431 190 aa1.27□□□□□ -2.21
PTPN4-212ENST00000488896 GMDSO60547 372 aa1.27□□□□□ -2.21
PTPN4-212ENST00000488896 RLN2P04090 185 aa1.27□□□□□ -2.21
PTPN4-212ENST00000488896 LIPCP11150 499 aa1.27□□□□□ -2.21
PTPN4-212ENST00000488896 TAC1P20366 129 aa1.27□□□□□ -2.21
PTPN4-212ENST00000488896 DHRS2Q13268 280 aa1.27□□□□□ -2.21
PTPN4-212ENST00000488896 WDR43Q15061 677 aaKnown RBP eCLIP1.27□□□□□ -2.21
PTPN4-212ENST00000488896 TAL2Q16559 108 aa1.27□□□□□ -2.21
PTPN4-212ENST00000488896 SYT6Q5T7P8 510 aaPredicted RBP1.27□□□□□ -2.21
PTPN4-212ENST00000488896 Q6ZSA8 131 aa1.27□□□□□ -2.21
PTPN4-212ENST00000488896 NELFCDQ8IXH7 590 aa1.27□□□□□ -2.21
PTPN4-212ENST00000488896 ARHGAP18Q8N392 663 aa1.27□□□□□ -2.21
PTPN4-212ENST00000488896 RPRMLQ8N4K4 120 aa1.27□□□□□ -2.21
PTPN4-212ENST00000488896 RNASE11Q8TAA1 199 aaKnown RBP1.27□□□□□ -2.21
PTPN4-212ENST00000488896 NCOR1P1Q9H4R4 102 aa1.27□□□□□ -2.21
PTPN4-212ENST00000488896 LZTFL1Q9NQ48 299 aa1.27□□□□□ -2.21
PTPN4-212ENST00000488896 LCTP09848 1927 aa1.27□□□□□ -2.21
PTPN4-212ENST00000488896 A0A1W2PPV4 95 aa1.26□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms