RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 USE1Q9NZ43 259 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 PDP1Q9P0J1 537 aaPredicted RBP3.05□□□□□ -1.92
PTCD3-216ENST00000487043 IKZF2Q9UKS7 526 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 SLC35A3Q9Y2D2 325 aa3.05□□□□□ -1.92
PTCD3-216ENST00000487043 YARS2Q9Y2Z4 477 aaKnown RBP3.05□□□□□ -1.92
PTCD3-216ENST00000487043 SAMHD1Q9Y3Z3 626 aaKnown RBP3.05□□□□□ -1.92
PTCD3-216ENST00000487043 CNOT1A5YKK6 2376 aaKnown RBP3.04□□□□□ -1.92
PTCD3-216ENST00000487043 PTPRZ1P23471 2315 aaPredicted RBP3.04□□□□□ -1.92
PTCD3-216ENST00000487043 NINQ8N4C6 2090 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 A0A075B6Q4 140 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 TRAPPC13A5PLN9 417 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 ARRDC5A6NEK1 342 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 H3BNH8 94 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 FAAHO00519 579 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 DLGAP1O14490 977 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 TP53I11O14683 189 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 DENRO43583 198 aaKnown RBP3.04□□□□□ -1.92
PTCD3-216ENST00000487043 EIF4E2O60573 245 aaKnown RBP3.04□□□□□ -1.92
PTCD3-216ENST00000487043 ICOSLGO75144 302 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 OR2J2O76002 312 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 CCNB2O95067 398 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 CSTAP01040 98 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 THY1P04216 161 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 P04436 131 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 STSP08842 583 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 GKN3PP0CG01 181 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 ANXA8P13928 327 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 GALP22466 123 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 CALCRP30988 508 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 RANBP1P43487 201 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 KIR2DS2P43631 304 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 HSPA13P48723 471 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 TMED10P49755 219 aaKnown RBP3.04□□□□□ -1.92
PTCD3-216ENST00000487043 DAPP51397 102 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 HNRNPA3P51991 378 aaKnown RBP3.04□□□□□ -1.92
PTCD3-216ENST00000487043 AQP4P55087 323 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 BIDP55957 195 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 RGS8P57771 180 aaPredicted RBP3.04□□□□□ -1.92
PTCD3-216ENST00000487043 MLF1P58340 268 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 TAS2R41P59536 307 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 COPZ1P61923 177 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 ADARB1P78563 741 aaKnown RBP3.04□□□□□ -1.92
PTCD3-216ENST00000487043 HOXC5Q00444 222 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 MERTKQ12866 999 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 TRAM2Q15035 370 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 OXA1LQ15070 435 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 OR1Q1Q15612 314 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 RFX4Q33E94 735 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 ZNF791Q3KP31 576 aaPredicted RBP3.04□□□□□ -1.92
PTCD3-216ENST00000487043 CARD17Q5XLA6 110 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 KDM4DQ6B0I6 523 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 C1orf94Q6P1W5 598 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 FAHD1Q6P587 224 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 ULK3Q6PHR2 472 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 OPN5Q6U736 354 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 C16orf47Q6ZP98 133 aaPredicted RBP3.04□□□□□ -1.92
PTCD3-216ENST00000487043 DNM1P46Q6ZS02 220 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 MARCH3Q86UD3 253 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 PRR22Q8IZ63 422 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 OFCC1Q8IZS5 231 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 HS3ST5Q8IZT8 346 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 TMEM156Q8N614 296 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 MAPK1IP1LQ8NDC0 245 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 OR10G2Q8NGC3 310 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 SLC7A13Q8TCU3 470 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 RNF138Q8WVD3 245 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 DNAJA4Q8WW22 397 aaPredicted RBP3.04□□□□□ -1.92
PTCD3-216ENST00000487043 GTSF1Q8WW33 167 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 PSMF1Q92530 271 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 UFD1Q92890 307 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 SLC38A4Q969I6 547 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 PRRC1Q96M27 445 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 ZNF184Q99676 751 aaPredicted RBP3.04□□□□□ -1.92
PTCD3-216ENST00000487043 PRSS27Q9BQR3 290 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 RNF126Q9BV68 326 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 OSBPL11Q9BXB4 747 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 TMEM27Q9HBJ8 222 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 SDHAF3Q9NRP4 125 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 STMN3Q9NZ72 180 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 RAB26Q9ULW5 256 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 CAB39Q9Y376 341 aaPredicted RBP3.04□□□□□ -1.92
PTCD3-216ENST00000487043 CSDC2Q9Y534 153 aaKnown RBP3.04□□□□□ -1.92
PTCD3-216ENST00000487043 MRPS18BQ9Y676 258 aaKnown RBP3.04□□□□□ -1.92
PTCD3-216ENST00000487043 COMMD3-BMI1R4GMX3 469 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 CEP250Q9BV73 2442 aa3.04□□□□□ -1.92
PTCD3-216ENST00000487043 A0A087WUJ7 227 aa3.03□□□□□ -1.92
PTCD3-216ENST00000487043 A0A087WUU8 490 aa3.03□□□□□ -1.92
PTCD3-216ENST00000487043 IGLV3-32A0A0A0MS00 114 aa3.03□□□□□ -1.92
PTCD3-216ENST00000487043 A0A0B4J2E0 115 aa3.03□□□□□ -1.92
PTCD3-216ENST00000487043 A0A1B0GWA3 101 aa3.03□□□□□ -1.92
PTCD3-216ENST00000487043 A0A1B0GX12 115 aa3.03□□□□□ -1.92
PTCD3-216ENST00000487043 A0A1W2PPE3 182 aa3.03□□□□□ -1.92
PTCD3-216ENST00000487043 CPSF4LA6NMK7 179 aaKnown RBP3.03□□□□□ -1.92
PTCD3-216ENST00000487043 DCTN6O00399 190 aa3.03□□□□□ -1.92
PTCD3-216ENST00000487043 HSD17B6O14756 317 aa3.03□□□□□ -1.92
PTCD3-216ENST00000487043 CHP2O43745 196 aa3.03□□□□□ -1.92
PTCD3-216ENST00000487043 SNAP29O95721 258 aa3.03□□□□□ -1.92
PTCD3-216ENST00000487043 UBTFL6P0CB48 400 aaPredicted RBP3.03□□□□□ -1.92
PTCD3-216ENST00000487043 IGLL1P15814 213 aa3.03□□□□□ -1.92
PTCD3-216ENST00000487043 GSTM3P21266 225 aa3.03□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms