RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 HSD11B1P28845 292 aa6.09□□□□□ -1.43
USP54-211ENST00000474929 OR1E2P47887 323 aa6.09□□□□□ -1.43
USP54-211ENST00000474929 NPBWR2P48146 333 aa6.09□□□□□ -1.43
USP54-211ENST00000474929 RAB9AP51151 201 aa6.09□□□□□ -1.43
USP54-211ENST00000474929 MADCAM1Q13477 382 aa6.09□□□□□ -1.43
USP54-211ENST00000474929 EBI3Q14213 229 aa6.09□□□□□ -1.43
USP54-211ENST00000474929 RBM39Q14498 530 aaKnown RBP6.09□□□□□ -1.43
USP54-211ENST00000474929 RBMS2Q15434 407 aaKnown RBP6.09□□□□□ -1.43
USP54-211ENST00000474929 LGALS9BQ3B8N2 356 aa6.09□□□□□ -1.43
USP54-211ENST00000474929 ZBED5Q49AG3 693 aa6.09□□□□□ -1.43
USP54-211ENST00000474929 SERTAD4-AS1Q5TG53 156 aa6.09□□□□□ -1.43
USP54-211ENST00000474929 SLX4IPQ5VYV7 408 aa6.09□□□□□ -1.43
USP54-211ENST00000474929 PYHIN1Q6K0P9 492 aa6.09□□□□□ -1.43
USP54-211ENST00000474929 TCF23Q7RTU1 214 aa6.09□□□□□ -1.43
USP54-211ENST00000474929 IZUMO1Q8IYV9 350 aa6.09□□□□□ -1.43
USP54-211ENST00000474929 OR2T10Q8NGZ9 312 aa6.09□□□□□ -1.43
USP54-211ENST00000474929 OR9G1Q8NH87 305 aa6.09□□□□□ -1.43
USP54-211ENST00000474929 GTF2H4Q92759 462 aa6.09□□□□□ -1.43
USP54-211ENST00000474929 SNX22Q96L94 193 aa6.09□□□□□ -1.43
USP54-211ENST00000474929 EBF4Q9BQW3 602 aa6.09□□□□□ -1.43
USP54-211ENST00000474929 NRIP3Q9NQ35 241 aa6.09□□□□□ -1.43
USP54-211ENST00000474929 TAS2R3Q9NYW6 316 aa6.09□□□□□ -1.43
USP54-211ENST00000474929 OR14J1Q9UGF5 321 aa6.09□□□□□ -1.43
USP54-211ENST00000474929 FBXL7Q9UJT9 491 aa6.09□□□□□ -1.43
USP54-211ENST00000474929 BAG5Q9UL15 447 aa6.09□□□□□ -1.43
USP54-211ENST00000474929 APOBP04114 4563 aaKnown RBP6.08□□□□□ -1.44
USP54-211ENST00000474929 LOC100996750A0A140TA64 210 aa6.08□□□□□ -1.44
USP54-211ENST00000474929 A0A1W2PPI3 338 aa6.08□□□□□ -1.44
USP54-211ENST00000474929 LINC01548A6NM66 108 aa6.08□□□□□ -1.44
USP54-211ENST00000474929 J3QT63 122 aa6.08□□□□□ -1.44
USP54-211ENST00000474929 M0QX08 132 aa6.08□□□□□ -1.44
USP54-211ENST00000474929 SOCS2O14508 198 aa6.08□□□□□ -1.44
USP54-211ENST00000474929 TXNDC12O95881 172 aa6.08□□□□□ -1.44
USP54-211ENST00000474929 SLC2A1P11166 492 aa6.08□□□□□ -1.44
USP54-211ENST00000474929 GPX2P18283 190 aa6.08□□□□□ -1.44
USP54-211ENST00000474929 CDK2P24941 298 aa6.08□□□□□ -1.44
USP54-211ENST00000474929 PPIFP30405 207 aaKnown RBP6.08□□□□□ -1.44
USP54-211ENST00000474929 PRKXP51817 358 aa6.08□□□□□ -1.44
USP54-211ENST00000474929 POLR2JP52435 117 aaKnown RBP6.08□□□□□ -1.44
USP54-211ENST00000474929 APOFQ13790 326 aa6.08□□□□□ -1.44
USP54-211ENST00000474929 KIAA0141Q14154 515 aaPredicted RBP6.08□□□□□ -1.44
USP54-211ENST00000474929 EDDM3AQ14507 147 aa6.08□□□□□ -1.44
USP54-211ENST00000474929 HNF4GQ14541 408 aa6.08□□□□□ -1.44
USP54-211ENST00000474929 CEACAM21Q3KPI0 293 aa6.08□□□□□ -1.44
USP54-211ENST00000474929 HAGHLQ6PII5 290 aaPredicted RBP6.08□□□□□ -1.44
USP54-211ENST00000474929 Q6ZWC4 215 aa6.08□□□□□ -1.44
USP54-211ENST00000474929 ZBTB46Q86UZ6 589 aa6.08□□□□□ -1.44
USP54-211ENST00000474929 ZNF573Q86YE8 665 aa6.08□□□□□ -1.44
USP54-211ENST00000474929 MICU2Q8IYU8 434 aa6.08□□□□□ -1.44
USP54-211ENST00000474929 RNF113BQ8IZP6 322 aaKnown RBP6.08□□□□□ -1.44
USP54-211ENST00000474929 TCTEX1D1Q8N7M0 179 aa6.08□□□□□ -1.44
USP54-211ENST00000474929 Q8N9W7 124 aa6.08□□□□□ -1.44
USP54-211ENST00000474929 OR4D11Q8NGI4 311 aa6.08□□□□□ -1.44
USP54-211ENST00000474929 OR5A2Q8NGI9 324 aa6.08□□□□□ -1.44
USP54-211ENST00000474929 OR4D6Q8NGJ1 314 aa6.08□□□□□ -1.44
USP54-211ENST00000474929 OR9I1Q8NGQ6 314 aa6.08□□□□□ -1.44
USP54-211ENST00000474929 OR13C2Q8NGS9 318 aa6.08□□□□□ -1.44
USP54-211ENST00000474929 PIGCQ92535 297 aa6.08□□□□□ -1.44
USP54-211ENST00000474929 C7orf26Q96N11 449 aa6.08□□□□□ -1.44
USP54-211ENST00000474929 KRTAP4-6Q9BYQ5 205 aa6.08□□□□□ -1.44
USP54-211ENST00000474929 NSRP1Q9H0G5 558 aaKnown RBP6.08□□□□□ -1.44
USP54-211ENST00000474929 NIPAL2Q9H841 368 aa6.08□□□□□ -1.44
USP54-211ENST00000474929 B9D1Q9UPM9 204 aa6.08□□□□□ -1.44
USP54-211ENST00000474929 TMEM5Q9Y2B1 443 aa6.08□□□□□ -1.44
USP54-211ENST00000474929 N6AMT1Q9Y5N5 214 aa6.08□□□□□ -1.44
USP54-211ENST00000474929 SRRM2Q9UQ35 2752 aaKnown RBP6.07□□□□□ -1.44
USP54-211ENST00000474929 LOC102724200A0A096LPH7 203 aaPredicted RBP6.07□□□□□ -1.44
USP54-211ENST00000474929 FAM90A10PA6NDY2 464 aa6.07□□□□□ -1.44
USP54-211ENST00000474929 OR11H12B2RN74 326 aa6.07□□□□□ -1.44
USP54-211ENST00000474929 ZNF732B4DXR9 585 aa6.07□□□□□ -1.44
USP54-211ENST00000474929 C11orf94C9JXX5 98 aa6.07□□□□□ -1.44
USP54-211ENST00000474929 ZNF737O75373 536 aa6.07□□□□□ -1.44
USP54-211ENST00000474929 HOXB9P17482 250 aaPredicted RBP6.07□□□□□ -1.44
USP54-211ENST00000474929 ERP29P30040 261 aaKnown RBP6.07□□□□□ -1.44
USP54-211ENST00000474929 SLC6A6P31641 620 aa6.07□□□□□ -1.44
USP54-211ENST00000474929 CX3CR1P49238 355 aa6.07□□□□□ -1.44
USP54-211ENST00000474929 APOC4P55056 127 aa6.07□□□□□ -1.44
USP54-211ENST00000474929 EWSR1Q01844 656 aaKnown RBP eCLIP6.07□□□□□ -1.44
USP54-211ENST00000474929 PRKCDQ05655 676 aa6.07□□□□□ -1.44
USP54-211ENST00000474929 FHL1Q13642 323 aa6.07□□□□□ -1.44
USP54-211ENST00000474929 CYP51A1Q16850 503 aa6.07□□□□□ -1.44
USP54-211ENST00000474929 TATDN3Q17R31 274 aa6.07□□□□□ -1.44
USP54-211ENST00000474929 MRGPRG-AS1Q2M3A8 158 aa6.07□□□□□ -1.44
USP54-211ENST00000474929 GFOD2Q3B7J2 385 aa6.07□□□□□ -1.44
USP54-211ENST00000474929 MOGAT2Q3SYC2 334 aa6.07□□□□□ -1.44
USP54-211ENST00000474929 PRAMEF5Q5TYX0 476 aa6.07□□□□□ -1.44
USP54-211ENST00000474929 SLC16A13Q7RTY0 426 aa6.07□□□□□ -1.44
USP54-211ENST00000474929 NRMQ8IXM6 262 aa6.07□□□□□ -1.44
USP54-211ENST00000474929 OR9G4Q8NGQ1 327 aa6.07□□□□□ -1.44
USP54-211ENST00000474929 FAM81AQ8TBF8 368 aa6.07□□□□□ -1.44
USP54-211ENST00000474929 HAVCR2Q8TDQ0 301 aa6.07□□□□□ -1.44
USP54-211ENST00000474929 PRRC1Q96M27 445 aa6.07□□□□□ -1.44
USP54-211ENST00000474929 KLK15Q9H2R5 256 aa6.07□□□□□ -1.44
USP54-211ENST00000474929 ZNF286AQ9HBT8 521 aa6.07□□□□□ -1.44
USP54-211ENST00000474929 HES4Q9HCC6 221 aa6.07□□□□□ -1.44
USP54-211ENST00000474929 SDR39U1Q9NRG7 319 aaPredicted RBP6.07□□□□□ -1.44
USP54-211ENST00000474929 TPSG1Q9NRR2 321 aa6.07□□□□□ -1.44
USP54-211ENST00000474929 ZNF107Q9UII5 783 aaPredicted RBP6.07□□□□□ -1.44
USP54-211ENST00000474929 ERGIC3Q9Y282 383 aa6.07□□□□□ -1.44
USP54-211ENST00000474929 A0A0G2JND7 137 aa6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms