RNA–Protein interactions for RNA: ENST00000474539.5

CCNL1-215, Transcript of cyclin L1, human

TSL 1 (best)

Gene CCNL1, Length 4,799 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCNL1-215	ENST00000474539	PPP1R2P9	O14990	202 aa		4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	TRAF3IP2	O43734	574 aa	Predicted RBP	4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	UPK1B	O75841	260 aa		4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	ADRA2A	P08913	450 aa		4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	NQO2	P16083	231 aa		4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	HLA-DMA	P28067	261 aa		4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	ETV5	P41161	510 aa		4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	PTGDS	P41222	190 aa		4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	SELENOT	P62341	195 aa		4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	EBLN2	Q6P2I7	272 aa		4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	ACSM6	Q6P461	480 aa		4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	ZNF788	Q6ZQV5	615 aa		4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	RBPMS2	Q6ZRY4	209 aa	Known RBP	4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	OR8H3	Q8N146	312 aa		4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	SUMF2	Q8NBJ7	301 aa		4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	HGD	Q93099	445 aa		4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	RAX2	Q96IS3	184 aa		4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	ZNF2	Q9BSG1	426 aa	Predicted RBP	4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	CNTNAP3	Q9BZ76	1288 aa		4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	CHST5	Q9GZS9	411 aa		4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	SPNS1	Q9H2V7	528 aa		4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	NTN4	Q9HB63	628 aa		4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	FSCN3	Q9NQT6	498 aa		4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	TMEM74B	Q9NUR3	256 aa		4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	FBLL1	A6NHQ2	334 aa	Known RBP	4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	OR10J4	P0C629	311 aa		4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	ZNF708	P17019	499 aa		4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	CA7	P43166	264 aa		4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	OR3A4P	P47883	348 aa		4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	NCS1	P62166	190 aa		4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	ANKRD34A	Q69YU3	496 aa		4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	NHLRC2	Q8NBF2	726 aa		4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	FAM131C	Q96AQ9	280 aa		4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	ABHD14B	Q96IU4	210 aa		4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	CXorf58	Q96LI9	332 aa		4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	DPCD	Q9BVM2	203 aa	Predicted RBP	4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	CLEC7A	Q9BXN2	247 aa		4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	OPN4	Q9UHM6	478 aa		4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	JPT1	Q9UK76	154 aa		4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	WASHC3	Q9Y3C0	194 aa		4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	POLR2A	P24928	1970 aa	Known RBP	4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	OR2F2	O95006	317 aa		4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	SLC2A10	O95528	541 aa		4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	SEC11B	P0C7V7	166 aa		4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	COX7A1	P24310	79 aa		4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	EFNA4	P52798	201 aa		4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	RPL8	P62917	257 aa	Known RBP	4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	HLA-DRB3	P79483	266 aa		4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	EMX1	Q04741	257 aa	Predicted RBP	4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	OR2F1	Q13607	317 aa		4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	OXA1L	Q15070	435 aa		4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	PLA2G2C	Q5R387	149 aa		4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	CDCP2	Q5VXM1	449 aa		4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	SFRP4	Q6FHJ7	346 aa	Predicted RBP	4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	APOOL	Q6UXV4	268 aa		4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	STAC2	Q6ZMT1	411 aa		4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	THNSL2	Q86YJ6	484 aa		4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	OR52M1	Q8NGK5	317 aa		4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	BSCL2	Q96G97	398 aa	Predicted RBP	4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	DCTN5	Q9BTE1	182 aa		4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	OPN3	Q9H1Y3	402 aa	Predicted RBP	4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	TMEM167B	Q9NRX6	74 aa		4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	SERTAD4	Q9NUC0	356 aa		4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539	COA4	Q9NYJ1	87 aa		4.05	□□□□□ -1.76
CCNL1-215	ENST00000474539		A0A0J9YW62	118 aa		4.04	□□□□□ -1.76
CCNL1-215	ENST00000474539		A0A1B0GUS0	222 aa		4.04	□□□□□ -1.76
CCNL1-215	ENST00000474539		E9PQ18	207 aa		4.04	□□□□□ -1.76
CCNL1-215	ENST00000474539	GNG7	O60262	68 aa		4.04	□□□□□ -1.76
CCNL1-215	ENST00000474539	LILRA1	O75019	489 aa		4.04	□□□□□ -1.76
CCNL1-215	ENST00000474539	PEBP1	P30086	187 aa	Known RBP	4.04	□□□□□ -1.76
CCNL1-215	ENST00000474539	FGF9	P31371	208 aa	Predicted RBP	4.04	□□□□□ -1.76
CCNL1-215	ENST00000474539	TNFSF8	P32971	234 aa		4.04	□□□□□ -1.76
CCNL1-215	ENST00000474539	EXOSC2	Q13868	293 aa	Known RBP	4.04	□□□□□ -1.76
CCNL1-215	ENST00000474539	PHYHD1	Q5SRE7	291 aa		4.04	□□□□□ -1.76
CCNL1-215	ENST00000474539	IL34	Q6ZMJ4	242 aa		4.04	□□□□□ -1.76
CCNL1-215	ENST00000474539		Q6ZS92	163 aa		4.04	□□□□□ -1.76
CCNL1-215	ENST00000474539	RNF141	Q8WVD5	230 aa		4.04	□□□□□ -1.76
CCNL1-215	ENST00000474539	PCNP	Q8WW12	178 aa	Known RBP	4.04	□□□□□ -1.76
CCNL1-215	ENST00000474539	ADIPOR1	Q96A54	375 aa		4.04	□□□□□ -1.76
CCNL1-215	ENST00000474539	C14orf79	Q96F83	325 aa		4.04	□□□□□ -1.76
CCNL1-215	ENST00000474539	TIMP4	Q99727	224 aa		4.04	□□□□□ -1.76
CCNL1-215	ENST00000474539	ZNF552	Q9H707	407 aa	Predicted RBP	4.04	□□□□□ -1.76
CCNL1-215	ENST00000474539	RBFOX1	Q9NWB1	397 aa	Known RBP	4.04	□□□□□ -1.76
CCNL1-215	ENST00000474539	MLX	Q9UH92	298 aa		4.04	□□□□□ -1.76
CCNL1-215	ENST00000474539	NUMA1	Q14980	2115 aa		4.04	□□□□□ -1.76
CCNL1-215	ENST00000474539	PLPP2	O43688	288 aa		4.04	□□□□□ -1.76
CCNL1-215	ENST00000474539	CDC14B	O60729	498 aa		4.04	□□□□□ -1.76
CCNL1-215	ENST00000474539	MYOD1	P15172	320 aa		4.04	□□□□□ -1.76
CCNL1-215	ENST00000474539	HIST1H1D	P16402	221 aa	Known RBP	4.04	□□□□□ -1.76
CCNL1-215	ENST00000474539	S100A4	P26447	101 aa	Known RBP	4.04	□□□□□ -1.76
CCNL1-215	ENST00000474539	S100A11	P31949	105 aa		4.04	□□□□□ -1.76
CCNL1-215	ENST00000474539	FCGR2C	P31995	323 aa		4.04	□□□□□ -1.76
CCNL1-215	ENST00000474539	PRDX2	P32119	198 aa		4.04	□□□□□ -1.76
CCNL1-215	ENST00000474539	RAB5B	P61020	215 aa		4.04	□□□□□ -1.76
CCNL1-215	ENST00000474539	GAMT	Q14353	236 aa		4.04	□□□□□ -1.76
CCNL1-215	ENST00000474539	HABP2	Q14520	560 aa	Predicted RBP	4.04	□□□□□ -1.76
CCNL1-215	ENST00000474539	MIDN	Q504T8	468 aa		4.04	□□□□□ -1.76
CCNL1-215	ENST00000474539	C1QL3	Q5VWW1	255 aa		4.04	□□□□□ -1.76
CCNL1-215	ENST00000474539	OR4A5	Q8NH83	315 aa		4.04	□□□□□ -1.76
CCNL1-215	ENST00000474539	TMEM54	Q969K7	222 aa		4.04	□□□□□ -1.76

Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms