RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 SLC5A7Q9GZV3 580 aa16.46■□□□□ 0.23
VIM-203ENST00000469543 ZC4H2Q9NQZ6 224 aa16.46■□□□□ 0.23
VIM-203ENST00000469543 SLC7A11Q9UPY5 501 aa16.46■□□□□ 0.23
VIM-203ENST00000469543 HAAOP46952 286 aa16.46■□□□□ 0.23
VIM-203ENST00000469543 FUT6P51993 359 aa16.46■□□□□ 0.23
VIM-203ENST00000469543 TMEM251Q8N6I4 163 aa16.46■□□□□ 0.23
VIM-203ENST00000469543 SLC30A7Q8NEW0 376 aa16.46■□□□□ 0.23
VIM-203ENST00000469543 RTN4IP1Q8WWV3 396 aaPredicted RBP16.46■□□□□ 0.23
VIM-203ENST00000469543 MARC2Q969Z3 335 aa16.46■□□□□ 0.23
VIM-203ENST00000469543 FAM173AQ9BQD7 235 aa16.46■□□□□ 0.23
VIM-203ENST00000469543 C12orf49Q9H741 205 aa16.46■□□□□ 0.23
VIM-203ENST00000469543 CRYM-AS1A6NIL9 109 aa16.45■□□□□ 0.22
VIM-203ENST00000469543 GPR31O00270 319 aa16.45■□□□□ 0.22
VIM-203ENST00000469543 ABCD4O14678 606 aa16.45■□□□□ 0.22
VIM-203ENST00000469543 HKR1P10072 659 aa16.45■□□□□ 0.22
VIM-203ENST00000469543 BCL3P20749 454 aa16.45■□□□□ 0.22
VIM-203ENST00000469543 TGIF1Q15583 401 aa16.45■□□□□ 0.22
VIM-203ENST00000469543 ASCL4Q6XD76 172 aa16.45■□□□□ 0.22
VIM-203ENST00000469543 OR5T2Q8NGG2 359 aa16.45■□□□□ 0.22
VIM-203ENST00000469543 HRH4Q9H3N8 390 aa16.45■□□□□ 0.22
VIM-203ENST00000469543 NECAP2Q9NVZ3 263 aa16.45■□□□□ 0.22
VIM-203ENST00000469543 ZNF816-ZNF321PA0A0X1KG74 233 aa16.45■□□□□ 0.22
VIM-203ENST00000469543 SP9P0CG40 484 aa16.45■□□□□ 0.22
VIM-203ENST00000469543 ZNF728P0DKX0 622 aa16.45■□□□□ 0.22
VIM-203ENST00000469543 ADCYAP1P18509 176 aa16.45■□□□□ 0.22
VIM-203ENST00000469543 PCBD1P61457 104 aa16.45■□□□□ 0.22
VIM-203ENST00000469543 EIF3IQ13347 325 aaKnown RBP16.45■□□□□ 0.22
VIM-203ENST00000469543 PDSS1Q5T2R2 415 aa16.45■□□□□ 0.22
VIM-203ENST00000469543 DHRS11Q6UWP2 260 aa16.45■□□□□ 0.22
VIM-203ENST00000469543 NUFIP2Q7Z417 695 aaKnown RBP16.45■□□□□ 0.22
VIM-203ENST00000469543 ZNF488Q96MN9 340 aa16.45■□□□□ 0.22
VIM-203ENST00000469543 C1QTNF5Q9BXJ0 243 aa16.45■□□□□ 0.22
VIM-203ENST00000469543 C1orf123Q9NWV4 160 aa16.45■□□□□ 0.22
VIM-203ENST00000469543 PLA2G2EQ9NZK7 142 aa16.45■□□□□ 0.22
VIM-203ENST00000469543 HSF4Q9ULV5 492 aa16.45■□□□□ 0.22
VIM-203ENST00000469543 STARD10Q9Y365 291 aa16.45■□□□□ 0.22
VIM-203ENST00000469543 LIPGQ9Y5X9 500 aa16.45■□□□□ 0.22
VIM-203ENST00000469543 ZNF705EA8MWA4 302 aaPredicted RBP16.44■□□□□ 0.22
VIM-203ENST00000469543 XRCC2O43543 280 aa16.44■□□□□ 0.22
VIM-203ENST00000469543 CTSDP07339 412 aaPredicted RBP16.44■□□□□ 0.22
VIM-203ENST00000469543 TAGLNQ01995 201 aaKnown RBP16.44■□□□□ 0.22
VIM-203ENST00000469543 ZNF273Q14593 569 aa16.44■□□□□ 0.22
VIM-203ENST00000469543 ESPL1Q14674 2120 aa16.44■□□□□ 0.22
VIM-203ENST00000469543 STOML3Q8TAV4 291 aa16.44■□□□□ 0.22
VIM-203ENST00000469543 ZNF552Q9H707 407 aaPredicted RBP16.44■□□□□ 0.22
VIM-203ENST00000469543 FAM96BQ9Y3D0 163 aa16.44■□□□□ 0.22
VIM-203ENST00000469543 IGHV3-64DA0A0J9YX35 117 aa16.44■□□□□ 0.22
VIM-203ENST00000469543 AGPAT2O15120 278 aa16.44■□□□□ 0.22
VIM-203ENST00000469543 LRP3O75074 770 aa16.44■□□□□ 0.22
VIM-203ENST00000469543 GUCA2BQ16661 112 aa16.44■□□□□ 0.22
VIM-203ENST00000469543 NSUN5P2Q63ZY6 315 aa16.44■□□□□ 0.22
VIM-203ENST00000469543 AQP10Q96PS8 301 aa16.44■□□□□ 0.22
VIM-203ENST00000469543 DNTTIP1Q9H147 329 aa16.44■□□□□ 0.22
VIM-203ENST00000469543 DEFB127Q9H1M4 99 aa16.44■□□□□ 0.22
VIM-203ENST00000469543 BCO1Q9HAY6 547 aa16.44■□□□□ 0.22
VIM-203ENST00000469543 SLC2A9Q9NRM0 540 aa16.44■□□□□ 0.22
VIM-203ENST00000469543 TRIM77I1YAP6 450 aa16.43■□□□□ 0.22
VIM-203ENST00000469543 RRP8O43159 456 aaKnown RBP16.43■□□□□ 0.22
VIM-203ENST00000469543 FGF16O43320 207 aa16.43■□□□□ 0.22
VIM-203ENST00000469543 RBM11P57052 281 aaKnown RBP16.43■□□□□ 0.22
VIM-203ENST00000469543 RAB1AP62820 205 aa16.43■□□□□ 0.22
VIM-203ENST00000469543 PLGLB1Q02325 96 aa16.43■□□□□ 0.22
VIM-203ENST00000469543 ARL6IP1Q15041 203 aa16.43■□□□□ 0.22
VIM-203ENST00000469543 SURF2Q15527 256 aaPredicted RBP16.43■□□□□ 0.22
VIM-203ENST00000469543 TMEM88Q6PEY1 159 aa16.43■□□□□ 0.22
VIM-203ENST00000469543 OR4A4PQ8NGN8 299 aa16.43■□□□□ 0.22
VIM-203ENST00000469543 HPSE2Q8WWQ2 592 aa16.43■□□□□ 0.22
VIM-203ENST00000469543 CNTNAP3BQ96NU0 1288 aa16.43■□□□□ 0.22
VIM-203ENST00000469543 CNTNAP3Q9BZ76 1288 aa16.43■□□□□ 0.22
VIM-203ENST00000469543 LDAHQ9H6V9 325 aa16.43■□□□□ 0.22
VIM-203ENST00000469543 DECR2Q9NUI1 292 aa16.43■□□□□ 0.22
VIM-203ENST00000469543 ABCA11PQ4W5N1 156 aa16.43■□□□□ 0.22
VIM-203ENST00000469543 HIKESHIQ53FT3 197 aa16.43■□□□□ 0.22
VIM-203ENST00000469543 OR52M1Q8NGK5 317 aa16.43■□□□□ 0.22
VIM-203ENST00000469543 LHFPL5Q8TAF8 219 aa16.43■□□□□ 0.22
VIM-203ENST00000469543 ERGIC1Q969X5 290 aa16.43■□□□□ 0.22
VIM-203ENST00000469543 PRSS50Q9UI38 385 aa16.43■□□□□ 0.22
VIM-203ENST00000469543 RP1L1Q8IWN7 2480 aaPredicted RBP16.43■□□□□ 0.22
VIM-203ENST00000469543 CA11O75493 328 aa16.42■□□□□ 0.22
VIM-203ENST00000469543 LYL1P12980 280 aa16.42■□□□□ 0.22
VIM-203ENST00000469543 ASCL1P50553 236 aa16.42■□□□□ 0.22
VIM-203ENST00000469543 MALLQ13021 153 aa16.42■□□□□ 0.22
VIM-203ENST00000469543 PRDX4Q13162 271 aa16.42■□□□□ 0.22
VIM-203ENST00000469543 TSC22D1Q15714 1073 aa16.42■□□□□ 0.22
VIM-203ENST00000469543 MST1LQ2TV78 715 aa16.42■□□□□ 0.22
VIM-203ENST00000469543 ZNF528Q3MIS6 628 aa16.42■□□□□ 0.22
VIM-203ENST00000469543 GLYATL2Q8WU03 294 aa16.42■□□□□ 0.22
VIM-203ENST00000469543 WISP2O76076 250 aa16.42■□□□□ 0.22
VIM-203ENST00000469543 TNFSF15O95150 251 aa16.42■□□□□ 0.22
VIM-203ENST00000469543 NME2P22392 152 aa16.42■□□□□ 0.22
VIM-203ENST00000469543 AADACP22760 399 aa16.42■□□□□ 0.22
VIM-203ENST00000469543 RPL12P30050 165 aaKnown RBP16.42■□□□□ 0.22
VIM-203ENST00000469543 COLCA1Q6ZS62 124 aa16.42■□□□□ 0.22
VIM-203ENST00000469543 TMPRSS7Q7RTY8 843 aa16.42■□□□□ 0.22
VIM-203ENST00000469543 RNF141Q8WVD5 230 aa16.42■□□□□ 0.22
VIM-203ENST00000469543 CPNE2Q96FN4 548 aaPredicted RBP16.42■□□□□ 0.22
VIM-203ENST00000469543 DDA1Q9BW61 102 aa16.42■□□□□ 0.22
VIM-203ENST00000469543 MTCH1Q9NZJ7 389 aa16.42■□□□□ 0.22
VIM-203ENST00000469543 MRPS18CQ9Y3D5 142 aaKnown RBP16.42■□□□□ 0.22
VIM-203ENST00000469543 A0A1W2PR80 420 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms