RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 PDZK1IP1Q13113 114 aa10.17□□□□□ -0.78
NPHP4-204ENST00000460696 OR2B11Q5JQS5 317 aa10.17□□□□□ -0.78
NPHP4-204ENST00000460696 FAHD2BQ6P2I3 314 aaPredicted RBP10.17□□□□□ -0.78
NPHP4-204ENST00000460696 FAM122CQ6P4D5 195 aa10.17□□□□□ -0.78
NPHP4-204ENST00000460696 PRSS54Q6PEW0 395 aa10.17□□□□□ -0.78
NPHP4-204ENST00000460696 ZFP82Q8N141 532 aa10.17□□□□□ -0.78
NPHP4-204ENST00000460696 ADPRHL1Q8NDY3 354 aa10.17□□□□□ -0.78
NPHP4-204ENST00000460696 OR14K1Q8NGZ2 314 aa10.17□□□□□ -0.78
NPHP4-204ENST00000460696 OR2G3Q8NGZ4 309 aa10.17□□□□□ -0.78
NPHP4-204ENST00000460696 FAHD2AQ96GK7 314 aa10.17□□□□□ -0.78
NPHP4-204ENST00000460696 AK3Q9UIJ7 227 aa10.17□□□□□ -0.78
NPHP4-204ENST00000460696 TNFSF18Q9UNG2 199 aa10.17□□□□□ -0.78
NPHP4-204ENST00000460696 TIMM8AO60220 97 aaPredicted RBP10.17□□□□□ -0.78
NPHP4-204ENST00000460696 UBE2V2Q15819 145 aa10.17□□□□□ -0.78
NPHP4-204ENST00000460696 SNAI3Q3KNW1 292 aa10.17□□□□□ -0.78
NPHP4-204ENST00000460696 C1QL2Q7Z5L3 287 aa10.17□□□□□ -0.78
NPHP4-204ENST00000460696 ANGPTL4Q9BY76 406 aa10.17□□□□□ -0.78
NPHP4-204ENST00000460696 TMEM38BQ9NVV0 291 aa10.17□□□□□ -0.78
NPHP4-204ENST00000460696 PPP1R3CQ9UQK1 317 aa10.17□□□□□ -0.78
NPHP4-204ENST00000460696 EFNA2O43921 213 aa10.17□□□□□ -0.78
NPHP4-204ENST00000460696 CEACAM1P13688 526 aa10.17□□□□□ -0.78
NPHP4-204ENST00000460696 MAGEA5P43359 124 aa10.17□□□□□ -0.78
NPHP4-204ENST00000460696 GABRA2P47869 451 aa10.17□□□□□ -0.78
NPHP4-204ENST00000460696 PRDX4Q13162 271 aa10.17□□□□□ -0.78
NPHP4-204ENST00000460696 TBC1D28Q2M2D7 210 aa10.17□□□□□ -0.78
NPHP4-204ENST00000460696 SOHLH1Q5JUK2 328 aa10.17□□□□□ -0.78
NPHP4-204ENST00000460696 FAM27BQ5VT28 67 aa10.17□□□□□ -0.78
NPHP4-204ENST00000460696 APOBEC3DQ96AK3 386 aaPredicted RBP10.17□□□□□ -0.78
NPHP4-204ENST00000460696 RHOFQ9HBH0 211 aa10.17□□□□□ -0.78
NPHP4-204ENST00000460696 SPACA1Q9HBV2 294 aa10.17□□□□□ -0.78
NPHP4-204ENST00000460696 CHCHD2Q9Y6H1 151 aaPredicted RBP10.17□□□□□ -0.78
NPHP4-204ENST00000460696 ZNF468Q5VIY5 522 aaPredicted RBP10.16□□□□□ -0.78
NPHP4-204ENST00000460696 ZNF441Q8N8Z8 693 aa10.16□□□□□ -0.78
NPHP4-204ENST00000460696 OR10Z1Q8NGY1 313 aa10.16□□□□□ -0.78
NPHP4-204ENST00000460696 SF3B5Q9BWJ5 86 aaKnown RBP10.16□□□□□ -0.78
NPHP4-204ENST00000460696 IL17BQ9UHF5 180 aa10.16□□□□□ -0.78
NPHP4-204ENST00000460696 GPR137BO60478 399 aa10.16□□□□□ -0.78
NPHP4-204ENST00000460696 COX6A1P12074 109 aa10.16□□□□□ -0.78
NPHP4-204ENST00000460696 ARR3P36575 388 aa10.16□□□□□ -0.78
NPHP4-204ENST00000460696 EDDM3AQ14507 147 aa10.16□□□□□ -0.78
NPHP4-204ENST00000460696 ZNF266Q14584 549 aa10.16□□□□□ -0.78
NPHP4-204ENST00000460696 SFT2D1Q8WV19 159 aa10.16□□□□□ -0.78
NPHP4-204ENST00000460696 MRPL24Q96A35 216 aaKnown RBP10.16□□□□□ -0.78
NPHP4-204ENST00000460696 ZNF837Q96EG3 531 aaPredicted RBP10.16□□□□□ -0.78
NPHP4-204ENST00000460696 PLEKHA2Q9HB19 425 aa10.16□□□□□ -0.78
NPHP4-204ENST00000460696 B3GAT1Q9P2W7 334 aa10.16□□□□□ -0.78
NPHP4-204ENST00000460696 FBXL17Q9UF56 701 aa10.16□□□□□ -0.78
NPHP4-204ENST00000460696 CA6P23280 308 aa10.16□□□□□ -0.78
NPHP4-204ENST00000460696 PSG4Q00888 419 aa10.16□□□□□ -0.78
NPHP4-204ENST00000460696 HSD17B13Q7Z5P4 300 aaPredicted RBP10.16□□□□□ -0.78
NPHP4-204ENST00000460696 C2CD4CQ8TF44 421 aa10.16□□□□□ -0.78
NPHP4-204ENST00000460696 ZPBPQ9BS86 351 aa10.16□□□□□ -0.78
NPHP4-204ENST00000460696 OR2H1Q9GZK4 316 aa10.16□□□□□ -0.78
NPHP4-204ENST00000460696 UNKLQ9H9P5 680 aaKnown RBP10.16□□□□□ -0.78
NPHP4-204ENST00000460696 GPR35Q9HC97 309 aa10.16□□□□□ -0.78
NPHP4-204ENST00000460696 ARPC4-TTLL3A0A0A6YYG9 625 aa10.16□□□□□ -0.78
NPHP4-204ENST00000460696 SLC22A20A6NK97 555 aa10.16□□□□□ -0.78
NPHP4-204ENST00000460696 TMEM14DPA8MWL7 114 aa10.16□□□□□ -0.78
NPHP4-204ENST00000460696 GPR31O00270 319 aa10.16□□□□□ -0.78
NPHP4-204ENST00000460696 ONECUT2O95948 504 aa10.16□□□□□ -0.78
NPHP4-204ENST00000460696 FABP6P51161 128 aa10.16□□□□□ -0.78
NPHP4-204ENST00000460696 HOGA1Q86XE5 327 aa10.16□□□□□ -0.78
NPHP4-204ENST00000460696 ZNF573Q86YE8 665 aa10.16□□□□□ -0.78
NPHP4-204ENST00000460696 ZADH2Q8N4Q0 377 aa10.16□□□□□ -0.78
NPHP4-204ENST00000460696 OR13G1Q8NGZ3 307 aa10.16□□□□□ -0.78
NPHP4-204ENST00000460696 FAM234AQ9H0X4 552 aa10.16□□□□□ -0.78
NPHP4-204ENST00000460696 CLDN1O95832 211 aa10.15□□□□□ -0.78
NPHP4-204ENST00000460696 TMEM33P57088 247 aa10.15□□□□□ -0.78
NPHP4-204ENST00000460696 NHLRC3Q5JS37 347 aa10.15□□□□□ -0.78
NPHP4-204ENST00000460696 TRIB1Q96RU8 372 aa10.15□□□□□ -0.78
NPHP4-204ENST00000460696 ESRP2Q9H6T0 727 aaKnown RBP10.15□□□□□ -0.78
NPHP4-204ENST00000460696 GPR27Q9NS67 375 aa10.15□□□□□ -0.78
NPHP4-204ENST00000460696 ZNF319Q9P2F9 582 aa10.15□□□□□ -0.78
NPHP4-204ENST00000460696 RCL1Q9Y2P8 373 aaKnown RBP10.15□□□□□ -0.78
NPHP4-204ENST00000460696 NUP210Q8TEM1 1887 aaPredicted RBP10.15□□□□□ -0.78
NPHP4-204ENST00000460696 IGLV3-12A0A075B6K2 115 aa10.15□□□□□ -0.78
NPHP4-204ENST00000460696 TRGV8A0A0C4DH27 118 aa10.15□□□□□ -0.78
NPHP4-204ENST00000460696 OR6C65A6NJZ3 312 aa10.15□□□□□ -0.78
NPHP4-204ENST00000460696 S100A2P29034 98 aa10.15□□□□□ -0.78
NPHP4-204ENST00000460696 ZNF92Q03936 586 aa10.15□□□□□ -0.78
NPHP4-204ENST00000460696 EIF3IQ13347 325 aaKnown RBP10.15□□□□□ -0.78
NPHP4-204ENST00000460696 CLPPQ16740 277 aaPredicted RBP10.15□□□□□ -0.78
NPHP4-204ENST00000460696 CXorf67Q86X51 503 aaPredicted RBP10.15□□□□□ -0.78
NPHP4-204ENST00000460696 ZNF808Q8N4W9 903 aaPredicted RBP10.15□□□□□ -0.78
NPHP4-204ENST00000460696 C14orf79Q96F83 325 aa10.15□□□□□ -0.78
NPHP4-204ENST00000460696 SUCNR1Q9BXA5 334 aa10.15□□□□□ -0.78
NPHP4-204ENST00000460696 SRXN1Q9BYN0 137 aa10.15□□□□□ -0.78
NPHP4-204ENST00000460696 RNF150Q9ULK6 438 aa10.15□□□□□ -0.78
NPHP4-204ENST00000460696 GPR132Q9UNW8 380 aa10.15□□□□□ -0.78
NPHP4-204ENST00000460696 XIRP2A4UGR9 3374 aa10.15□□□□□ -0.79
NPHP4-204ENST00000460696 A0A1B0GTI1 187 aa10.15□□□□□ -0.79
NPHP4-204ENST00000460696 NPIPB13A6NJU9 1138 aa10.15□□□□□ -0.79
NPHP4-204ENST00000460696 NPIPB4C9JG80 1138 aa10.15□□□□□ -0.79
NPHP4-204ENST00000460696 HPP00738 406 aa10.15□□□□□ -0.79
NPHP4-204ENST00000460696 CST2P09228 141 aa10.15□□□□□ -0.79
NPHP4-204ENST00000460696 IGFBP3P17936 291 aaPredicted RBP10.15□□□□□ -0.79
NPHP4-204ENST00000460696 MEOX1P50221 254 aa10.15□□□□□ -0.79
NPHP4-204ENST00000460696 PLAC9Q5JTB6 97 aa10.15□□□□□ -0.79
NPHP4-204ENST00000460696 ZFP62Q8NB50 900 aaPredicted RBP10.15□□□□□ -0.79
NPHP4-204ENST00000460696 FBXO17Q96EF6 278 aa10.15□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms