RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 OR52M1Q8NGK5 317 aa10.37□□□□□ -0.75
MSH6-204ENST00000445503 BSCL2Q96G97 398 aaPredicted RBP10.37□□□□□ -0.75
MSH6-204ENST00000445503 SLC25A31Q9H0C2 315 aa10.37□□□□□ -0.75
MSH6-204ENST00000445503 NCOR1O75376 2440 aa10.37□□□□□ -0.75
MSH6-204ENST00000445503 PLGLB1Q02325 96 aa10.36□□□□□ -0.75
MSH6-204ENST00000445503 ZNF266Q14584 549 aa10.36□□□□□ -0.75
MSH6-204ENST00000445503 LCN15Q6UWW0 184 aa10.36□□□□□ -0.75
MSH6-204ENST00000445503 VASH2Q86V25 355 aa10.36□□□□□ -0.75
MSH6-204ENST00000445503 PARP11Q9NR21 331 aa10.36□□□□□ -0.75
MSH6-204ENST00000445503 ZNF581Q9P0T4 197 aa10.36□□□□□ -0.75
MSH6-204ENST00000445503 CCDC187A0A096LP49 1063 aa10.36□□□□□ -0.75
MSH6-204ENST00000445503 MRPL33O75394 65 aaKnown RBP10.36□□□□□ -0.75
MSH6-204ENST00000445503 DEDDO75618 318 aa10.36□□□□□ -0.75
MSH6-204ENST00000445503 MT-ND4LP03901 98 aa10.36□□□□□ -0.75
MSH6-204ENST00000445503 HAAOP46952 286 aa10.36□□□□□ -0.75
MSH6-204ENST00000445503 HIST2H3AQ71DI3 136 aa10.36□□□□□ -0.75
MSH6-204ENST00000445503 ZNF441Q8N8Z8 693 aa10.36□□□□□ -0.75
MSH6-204ENST00000445503 CADM4Q8NFZ8 388 aa10.36□□□□□ -0.75
MSH6-204ENST00000445503 OR1J1Q8NGS3 322 aa10.36□□□□□ -0.75
MSH6-204ENST00000445503 OR6S1Q8NH40 331 aa10.36□□□□□ -0.75
MSH6-204ENST00000445503 DUSP23Q9BVJ7 150 aa10.36□□□□□ -0.75
MSH6-204ENST00000445503 PHF7Q9BWX1 381 aaPredicted RBP10.36□□□□□ -0.75
MSH6-204ENST00000445503 UNKLQ9H9P5 680 aaKnown RBP10.36□□□□□ -0.75
MSH6-204ENST00000445503 GNG13Q9P2W3 67 aa10.36□□□□□ -0.75
MSH6-204ENST00000445503 CARHSP1Q9Y2V2 147 aaKnown RBP10.36□□□□□ -0.75
MSH6-204ENST00000445503 CHD9Q3L8U1 2897 aa10.36□□□□□ -0.75
MSH6-204ENST00000445503 NKX2-6A6NCS4 301 aa10.36□□□□□ -0.75
MSH6-204ENST00000445503 E9PLN8 166 aa10.36□□□□□ -0.75
MSH6-204ENST00000445503 TRAPPC2LH3BP13 241 aa10.36□□□□□ -0.75
MSH6-204ENST00000445503 LSM6P62312 80 aaKnown RBP10.36□□□□□ -0.75
MSH6-204ENST00000445503 RAB11AP62491 216 aa10.36□□□□□ -0.75
MSH6-204ENST00000445503 PHYHD1Q5SRE7 291 aa10.36□□□□□ -0.75
MSH6-204ENST00000445503 LILRB2Q8N423 598 aa10.36□□□□□ -0.75
MSH6-204ENST00000445503 PFDN5Q99471 154 aa10.36□□□□□ -0.75
MSH6-204ENST00000445503 ESRP2Q9H6T0 727 aaKnown RBP10.36□□□□□ -0.75
MSH6-204ENST00000445503 LTBP2Q14767 1821 aa10.36□□□□□ -0.75
MSH6-204ENST00000445503 PPP1CCP36873 323 aaKnown RBP10.36□□□□□ -0.75
MSH6-204ENST00000445503 PLP2Q04941 152 aa10.36□□□□□ -0.75
MSH6-204ENST00000445503 SURF2Q15527 256 aaPredicted RBP10.36□□□□□ -0.75
MSH6-204ENST00000445503 OR5C1Q8NGR4 320 aa10.36□□□□□ -0.75
MSH6-204ENST00000445503 SPSB1Q96BD6 273 aa10.36□□□□□ -0.75
MSH6-204ENST00000445503 LYZL4Q96KX0 146 aa10.36□□□□□ -0.75
MSH6-204ENST00000445503 SUCNR1Q9BXA5 334 aa10.36□□□□□ -0.75
MSH6-204ENST00000445503 SHANK1Q9Y566 2161 aa10.35□□□□□ -0.75
MSH6-204ENST00000445503 A0A0J9YW62 118 aa10.35□□□□□ -0.75
MSH6-204ENST00000445503 ADAM20O43506 726 aa10.35□□□□□ -0.75
MSH6-204ENST00000445503 FAM157CP0CG43 387 aa10.35□□□□□ -0.75
MSH6-204ENST00000445503 ANOS1P23352 680 aa10.35□□□□□ -0.75
MSH6-204ENST00000445503 LIAT1Q6ZQX7 453 aa10.35□□□□□ -0.75
MSH6-204ENST00000445503 C17orf78Q8N4C9 275 aa10.35□□□□□ -0.75
MSH6-204ENST00000445503 OR2C3Q8N628 320 aa10.35□□□□□ -0.75
MSH6-204ENST00000445503 WDSUB1Q8N9V3 476 aa10.35□□□□□ -0.75
MSH6-204ENST00000445503 EXTL1Q92935 676 aa10.35□□□□□ -0.75
MSH6-204ENST00000445503 SLC35B3Q9H1N7 401 aa10.35□□□□□ -0.75
MSH6-204ENST00000445503 R4GN57 208 aa10.35□□□□□ -0.75
MSH6-204ENST00000445503 A0A1W2PNV4 684 aa10.35□□□□□ -0.75
MSH6-204ENST00000445503 ZNF727A8MUV8 499 aa10.35□□□□□ -0.75
MSH6-204ENST00000445503 SLC34A2O95436 690 aa10.35□□□□□ -0.75
MSH6-204ENST00000445503 FCGR3AP08637 254 aa10.35□□□□□ -0.75
MSH6-204ENST00000445503 PRF1P14222 555 aa10.35□□□□□ -0.75
MSH6-204ENST00000445503 SULT1A1P50225 295 aa10.35□□□□□ -0.75
MSH6-204ENST00000445503 CLEC12BQ2HXU8 276 aa10.35□□□□□ -0.75
MSH6-204ENST00000445503 LHFPL2Q6ZUX7 228 aa10.35□□□□□ -0.75
MSH6-204ENST00000445503 WDR5BQ86VZ2 330 aa10.35□□□□□ -0.75
MSH6-204ENST00000445503 THNSL2Q86YJ6 484 aa10.35□□□□□ -0.75
MSH6-204ENST00000445503 SLC35G3Q8N808 338 aa10.35□□□□□ -0.75
MSH6-204ENST00000445503 C15orf54Q8N8G6 183 aa10.35□□□□□ -0.75
MSH6-204ENST00000445503 AGBL5Q8NDL9 886 aa10.35□□□□□ -0.75
MSH6-204ENST00000445503 PSMF1Q92530 271 aa10.35□□□□□ -0.75
MSH6-204ENST00000445503 FOXB1Q99853 325 aa10.35□□□□□ -0.75
MSH6-204ENST00000445503 NOSIPQ9Y314 301 aaKnown RBP10.35□□□□□ -0.75
MSH6-204ENST00000445503 TIMM10BQ9Y5J6 103 aa10.35□□□□□ -0.75
MSH6-204ENST00000445503 C9JQL5 133 aa10.35□□□□□ -0.75
MSH6-204ENST00000445503 CCL4P13236 92 aa10.35□□□□□ -0.75
MSH6-204ENST00000445503 NKX6-1P78426 367 aaPredicted RBP10.35□□□□□ -0.75
MSH6-204ENST00000445503 ZNF611Q8N823 705 aa10.35□□□□□ -0.75
MSH6-204ENST00000445503 NIPSNAP3BQ9BS92 247 aa10.35□□□□□ -0.75
MSH6-204ENST00000445503 C5orf49A4QMS7 147 aa10.34□□□□□ -0.75
MSH6-204ENST00000445503 IAPPP10997 89 aa10.34□□□□□ -0.75
MSH6-204ENST00000445503 RAB5AP20339 215 aa10.34□□□□□ -0.75
MSH6-204ENST00000445503 FUT3P21217 361 aa10.34□□□□□ -0.75
MSH6-204ENST00000445503 GPM6AP51674 278 aa10.34□□□□□ -0.75
MSH6-204ENST00000445503 WDR74Q6RFH5 385 aaPredicted RBP10.34□□□□□ -0.75
MSH6-204ENST00000445503 ZNF100Q8IYN0 542 aa10.34□□□□□ -0.75
MSH6-204ENST00000445503 RARRES2Q99969 163 aa10.34□□□□□ -0.75
MSH6-204ENST00000445503 LIPGQ9Y5X9 500 aa10.34□□□□□ -0.75
MSH6-204ENST00000445503 C3orf85A0A1B0GTC6 90 aa10.34□□□□□ -0.75
MSH6-204ENST00000445503 CD300LBA8K4G0 201 aa10.34□□□□□ -0.75
MSH6-204ENST00000445503 ACKR3P25106 362 aa10.34□□□□□ -0.75
MSH6-204ENST00000445503 DSCR4P56555 118 aaPredicted RBP10.34□□□□□ -0.75
MSH6-204ENST00000445503 PCBD1P61457 104 aa10.34□□□□□ -0.75
MSH6-204ENST00000445503 RUNX1Q01196 453 aa10.34□□□□□ -0.75
MSH6-204ENST00000445503 NFAM1Q8NET5 270 aaPredicted RBP10.34□□□□□ -0.75
MSH6-204ENST00000445503 HIST1H2BAQ96A08 127 aa10.34□□□□□ -0.75
MSH6-204ENST00000445503 TCEAL7Q9BRU2 100 aa10.34□□□□□ -0.75
MSH6-204ENST00000445503 IGHV5-10-1A0A0J9YXX1 117 aa10.34□□□□□ -0.75
MSH6-204ENST00000445503 CRYM-AS1A6NIL9 109 aa10.34□□□□□ -0.75
MSH6-204ENST00000445503 DBX1A6NMT0 343 aa10.34□□□□□ -0.75
MSH6-204ENST00000445503 ELLP55199 621 aaPredicted RBP10.34□□□□□ -0.75
MSH6-204ENST00000445503 MIOXQ9UGB7 285 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms