RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 PRR13Q9NZ81 148 aa13.64□□□□□ -0.23
PTPRF-206ENST00000429895 ZNF680Q8NEM1 530 aa13.64□□□□□ -0.23
PTPRF-206ENST00000429895 MOGAT1Q96PD6 335 aa13.64□□□□□ -0.23
PTPRF-206ENST00000429895 KCNMB2Q9Y691 235 aa13.64□□□□□ -0.23
PTPRF-206ENST00000429895 AANATQ16613 207 aa13.63□□□□□ -0.23
PTPRF-206ENST00000429895 GVQW1Q8N7I0 195 aa13.63□□□□□ -0.23
PTPRF-206ENST00000429895 GABRG3Q99928 467 aa13.63□□□□□ -0.23
PTPRF-206ENST00000429895 PATE3B3GLJ2 98 aa13.63□□□□□ -0.23
PTPRF-206ENST00000429895 PDCD6O75340 191 aa13.63□□□□□ -0.23
PTPRF-206ENST00000429895 ZFPL1O95159 310 aa13.63□□□□□ -0.23
PTPRF-206ENST00000429895 CSN3P07498 182 aa13.63□□□□□ -0.23
PTPRF-206ENST00000429895 RAB32Q13637 225 aa13.63□□□□□ -0.23
PTPRF-206ENST00000429895 GGNBP1Q5YKI7 109 aa13.63□□□□□ -0.23
PTPRF-206ENST00000429895 NUFIP2Q7Z417 695 aaKnown RBP13.63□□□□□ -0.23
PTPRF-206ENST00000429895 RAB40CQ96S21 281 aa13.63□□□□□ -0.23
PTPRF-206ENST00000429895 AUP1Q9Y679 476 aa13.63□□□□□ -0.23
PTPRF-206ENST00000429895 CTLA4P16410 223 aa13.63□□□□□ -0.23
PTPRF-206ENST00000429895 NAAAQ02083 359 aa13.63□□□□□ -0.23
PTPRF-206ENST00000429895 OR10G4Q8NGN3 311 aa13.63□□□□□ -0.23
PTPRF-206ENST00000429895 OR10G9Q8NGN4 311 aa13.63□□□□□ -0.23
PTPRF-206ENST00000429895 OR10G7Q8NGN6 311 aa13.63□□□□□ -0.23
PTPRF-206ENST00000429895 TMUB1Q9BVT8 246 aa13.63□□□□□ -0.23
PTPRF-206ENST00000429895 NAA60Q9H7X0 242 aa13.63□□□□□ -0.23
PTPRF-206ENST00000429895 MGPP08493 103 aa13.63□□□□□ -0.23
PTPRF-206ENST00000429895 PGA3P0DJD8 388 aa13.63□□□□□ -0.23
PTPRF-206ENST00000429895 OR8B12Q8NGG6 310 aa13.63□□□□□ -0.23
PTPRF-206ENST00000429895 ASB10Q8WXI3 467 aa13.63□□□□□ -0.23
PTPRF-206ENST00000429895 GNG7O60262 68 aa13.63□□□□□ -0.23
PTPRF-206ENST00000429895 MOGAT2Q3SYC2 334 aa13.63□□□□□ -0.23
PTPRF-206ENST00000429895 CTGFP29279 349 aa13.62□□□□□ -0.23
PTPRF-206ENST00000429895 ZNF561Q8N587 486 aa13.62□□□□□ -0.23
PTPRF-206ENST00000429895 FLYWCH2Q96CP2 140 aaKnown RBP13.62□□□□□ -0.23
PTPRF-206ENST00000429895 ZNF275Q9NSD4 429 aaPredicted RBP13.62□□□□□ -0.23
PTPRF-206ENST00000429895 TINAGQ9UJW2 476 aa13.62□□□□□ -0.23
PTPRF-206ENST00000429895 EVPLQ92817 2033 aa13.62□□□□□ -0.23
PTPRF-206ENST00000429895 ECSCRQ19T08 205 aa13.62□□□□□ -0.23
PTPRF-206ENST00000429895 C19orf35Q6ZS72 473 aa13.62□□□□□ -0.23
PTPRF-206ENST00000429895 ZDHHC22Q8N966 263 aa13.62□□□□□ -0.23
PTPRF-206ENST00000429895 ZNF707Q96C28 371 aaPredicted RBP13.62□□□□□ -0.23
PTPRF-206ENST00000429895 RABAC1Q9UI14 185 aa13.62□□□□□ -0.23
PTPRF-206ENST00000429895 TRAV34A0A0B4J273 112 aa13.62□□□□□ -0.23
PTPRF-206ENST00000429895 ASPDHA6ND91 283 aa13.62□□□□□ -0.23
PTPRF-206ENST00000429895 CCL21O00585 134 aa13.62□□□□□ -0.23
PTPRF-206ENST00000429895 FCN1O00602 326 aa13.62□□□□□ -0.23
PTPRF-206ENST00000429895 CTAG2O75638 210 aa13.62□□□□□ -0.23
PTPRF-206ENST00000429895 RPL30P62888 115 aaKnown RBP13.62□□□□□ -0.23
PTPRF-206ENST00000429895 R3HDM4Q96D70 268 aa13.62□□□□□ -0.23
PTPRF-206ENST00000429895 AP5S1Q9NUS5 200 aa13.62□□□□□ -0.23
PTPRF-206ENST00000429895 MAST2Q6P0Q8 1798 aa13.62□□□□□ -0.23
PTPRF-206ENST00000429895 C9orf170A2RU37 121 aa13.62□□□□□ -0.23
PTPRF-206ENST00000429895 HAND1O96004 215 aa13.62□□□□□ -0.23
PTPRF-206ENST00000429895 UBE2L3P68036 154 aaKnown RBP13.62□□□□□ -0.23
PTPRF-206ENST00000429895 HIKESHIQ53FT3 197 aa13.62□□□□□ -0.23
PTPRF-206ENST00000429895 PDPNQ86YL7 162 aa13.62□□□□□ -0.23
PTPRF-206ENST00000429895 VSTM2LQ96N03 204 aa13.62□□□□□ -0.23
PTPRF-206ENST00000429895 NPY1RP25929 384 aa13.62□□□□□ -0.23
PTPRF-206ENST00000429895 COL19A1Q14993 1142 aa13.62□□□□□ -0.23
PTPRF-206ENST00000429895 THSD4Q6ZMP0 1018 aa13.62□□□□□ -0.23
PTPRF-206ENST00000429895 C5orf17Q8NAS9 161 aa13.62□□□□□ -0.23
PTPRF-206ENST00000429895 IGHV3-21A0A0B4J1V1 117 aa13.61□□□□□ -0.23
PTPRF-206ENST00000429895 PRSS44E7EML9 344 aa13.61□□□□□ -0.23
PTPRF-206ENST00000429895 ACP1P24666 158 aa13.61□□□□□ -0.23
PTPRF-206ENST00000429895 TMEM241Q24JQ0 296 aa13.61□□□□□ -0.23
PTPRF-206ENST00000429895 OR10A7Q8NGE5 316 aa13.61□□□□□ -0.23
PTPRF-206ENST00000429895 PIK3IP1Q96FE7 263 aa13.61□□□□□ -0.23
PTPRF-206ENST00000429895 SH2D2AQ9NP31 389 aa13.61□□□□□ -0.23
PTPRF-206ENST00000429895 GPR27Q9NS67 375 aa13.61□□□□□ -0.23
PTPRF-206ENST00000429895 FXYD1O00168 92 aa13.61□□□□□ -0.23
PTPRF-206ENST00000429895 CDIPTO14735 213 aa13.61□□□□□ -0.23
PTPRF-206ENST00000429895 PEX11BO96011 259 aa13.61□□□□□ -0.23
PTPRF-206ENST00000429895 CSF2RBP32927 897 aa13.61□□□□□ -0.23
PTPRF-206ENST00000429895 SPCS3P61009 180 aa13.61□□□□□ -0.23
PTPRF-206ENST00000429895 HOXA4Q00056 320 aaPredicted RBP13.61□□□□□ -0.23
PTPRF-206ENST00000429895 DHRS11Q6UWP2 260 aa13.61□□□□□ -0.23
PTPRF-206ENST00000429895 RASL10BQ96S79 203 aa13.61□□□□□ -0.23
PTPRF-206ENST00000429895 LIPGQ9Y5X9 500 aa13.61□□□□□ -0.23
PTPRF-206ENST00000429895 A0A1B0GTQ1 180 aa13.61□□□□□ -0.23
PTPRF-206ENST00000429895 NTN1O95631 604 aa13.61□□□□□ -0.23
PTPRF-206ENST00000429895 SELENOPP49908 381 aa13.61□□□□□ -0.23
PTPRF-206ENST00000429895 HLXQ14774 488 aaPredicted RBP13.61□□□□□ -0.23
PTPRF-206ENST00000429895 ZNF141Q15928 474 aa13.61□□□□□ -0.23
PTPRF-206ENST00000429895 TSPO2Q5TGU0 170 aa13.61□□□□□ -0.23
PTPRF-206ENST00000429895 DUSP18Q8NEJ0 188 aa13.61□□□□□ -0.23
PTPRF-206ENST00000429895 OR4S2Q8NH73 311 aa13.61□□□□□ -0.23
PTPRF-206ENST00000429895 A0A1B0GUL6 1792 aa13.61□□□□□ -0.23
PTPRF-206ENST00000429895 ATXN7O15265 892 aaPredicted RBP13.61□□□□□ -0.23
PTPRF-206ENST00000429895 CST4P01036 141 aa13.61□□□□□ -0.23
PTPRF-206ENST00000429895 PNLIPP16233 465 aa13.61□□□□□ -0.23
PTPRF-206ENST00000429895 MUC20Q8N307 709 aaPredicted RBP13.61□□□□□ -0.23
PTPRF-206ENST00000429895 CD1BP29016 333 aa13.61□□□□□ -0.23
PTPRF-206ENST00000429895 DRD3P35462 400 aa13.61□□□□□ -0.23
PTPRF-206ENST00000429895 WNT3P56703 355 aa13.61□□□□□ -0.23
PTPRF-206ENST00000429895 TBC1D26Q86UD7 250 aa13.61□□□□□ -0.23
PTPRF-206ENST00000429895 TMEM116Q8NCL8 245 aa13.61□□□□□ -0.23
PTPRF-206ENST00000429895 PCGF1Q9BSM1 259 aa13.61□□□□□ -0.23
PTPRF-206ENST00000429895 SLC7A10Q9NS82 523 aa13.61□□□□□ -0.23
PTPRF-206ENST00000429895 RHBDD2Q6NTF9 364 aa13.6□□□□□ -0.23
PTPRF-206ENST00000429895 LILRA6Q6PI73 481 aa13.6□□□□□ -0.23
PTPRF-206ENST00000429895 ASCL3Q9NQ33 180 aa13.6□□□□□ -0.23
PTPRF-206ENST00000429895 SIRT3Q9NTG7 399 aaPredicted RBP13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 909.4 ms