RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 FOLR1P15328 257 aa9.32□□□□□ -0.92
USP54-204ENST00000422491 EPHA1P21709 976 aa9.32□□□□□ -0.92
USP54-204ENST00000422491 ZNF133P52736 654 aaPredicted RBP9.32□□□□□ -0.92
USP54-204ENST00000422491 EFNA3P52797 238 aa9.32□□□□□ -0.92
USP54-204ENST00000422491 RPL23AP62750 156 aaKnown RBP9.32□□□□□ -0.92
USP54-204ENST00000422491 GABREP78334 506 aa9.32□□□□□ -0.92
USP54-204ENST00000422491 TNFRSF9Q07011 255 aa9.32□□□□□ -0.92
USP54-204ENST00000422491 PNRC1Q12796 327 aaPredicted RBP9.32□□□□□ -0.92
USP54-204ENST00000422491 THEM4Q5T1C6 240 aa9.32□□□□□ -0.92
USP54-204ENST00000422491 ODF3L1Q8IXM7 274 aa9.32□□□□□ -0.92
USP54-204ENST00000422491 OR4X1Q8NH49 305 aa9.32□□□□□ -0.92
USP54-204ENST00000422491 CA5BP1Q8WTZ4 195 aa9.32□□□□□ -0.92
USP54-204ENST00000422491 DNASE2BQ8WZ79 361 aa9.32□□□□□ -0.92
USP54-204ENST00000422491 LYZL4Q96KX0 146 aa9.32□□□□□ -0.92
USP54-204ENST00000422491 Q96M66 194 aa9.32□□□□□ -0.92
USP54-204ENST00000422491 NUDT22Q9BRQ3 303 aa9.32□□□□□ -0.92
USP54-204ENST00000422491 WWTR1Q9GZV5 400 aa9.32□□□□□ -0.92
USP54-204ENST00000422491 CALHM2Q9HA72 323 aa9.32□□□□□ -0.92
USP54-204ENST00000422491 SERINC1Q9NRX5 453 aa9.32□□□□□ -0.92
USP54-204ENST00000422491 GLRX2Q9NS18 164 aa9.32□□□□□ -0.92
USP54-204ENST00000422491 DKKL1Q9UK85 242 aa9.32□□□□□ -0.92
USP54-204ENST00000422491 COL5A1P20908 1838 aaPredicted RBP9.32□□□□□ -0.92
USP54-204ENST00000422491 MYO7BQ6PIF6 2116 aa9.32□□□□□ -0.92
USP54-204ENST00000422491 ZNF850A8MQ14 1090 aa9.31□□□□□ -0.92
USP54-204ENST00000422491 PROB1E7EW31 1015 aa9.31□□□□□ -0.92
USP54-204ENST00000422491 HSPA12AO43301 675 aa9.31□□□□□ -0.92
USP54-204ENST00000422491 CYTIPO60759 359 aa9.31□□□□□ -0.92
USP54-204ENST00000422491 GNRH1P01148 92 aa9.31□□□□□ -0.92
USP54-204ENST00000422491 NOVA1P51513 510 aaKnown RBP9.31□□□□□ -0.92
USP54-204ENST00000422491 FXYD4P59646 89 aa9.31□□□□□ -0.92
USP54-204ENST00000422491 H3F3AP84243 136 aa9.31□□□□□ -0.92
USP54-204ENST00000422491 SLC10A1Q14973 349 aa9.31□□□□□ -0.92
USP54-204ENST00000422491 TAF9Q16594 264 aa9.31□□□□□ -0.92
USP54-204ENST00000422491 DTX1Q86Y01 620 aa9.31□□□□□ -0.92
USP54-204ENST00000422491 TMEM252Q8N6L7 170 aa9.31□□□□□ -0.92
USP54-204ENST00000422491 OR11L1Q8NGX0 322 aa9.31□□□□□ -0.92
USP54-204ENST00000422491 CDCA3Q99618 268 aaPredicted RBP9.31□□□□□ -0.92
USP54-204ENST00000422491 SLC7A11Q9UPY5 501 aa9.31□□□□□ -0.92
USP54-204ENST00000422491 B3GALT1Q9Y5Z6 326 aa9.31□□□□□ -0.92
USP54-204ENST00000422491 SZT2Q5T011 3432 aa9.31□□□□□ -0.92
USP54-204ENST00000422491 TMEM150CB9EJG8 249 aa9.31□□□□□ -0.92
USP54-204ENST00000422491 PHF1O43189 567 aaPredicted RBP9.31□□□□□ -0.92
USP54-204ENST00000422491 FCGR2AP12318 317 aa9.31□□□□□ -0.92
USP54-204ENST00000422491 CEACAM1P13688 526 aa9.31□□□□□ -0.92
USP54-204ENST00000422491 OMGP23515 440 aa9.31□□□□□ -0.92
USP54-204ENST00000422491 AKT2P31751 481 aa9.31□□□□□ -0.92
USP54-204ENST00000422491 OPRM1P35372 400 aa9.31□□□□□ -0.92
USP54-204ENST00000422491 RNF4P78317 190 aa9.31□□□□□ -0.92
USP54-204ENST00000422491 RUNX1Q01196 453 aa9.31□□□□□ -0.92
USP54-204ENST00000422491 COA6Q5JTJ3 125 aaKnown RBP9.31□□□□□ -0.92
USP54-204ENST00000422491 HLA-DQA1Q5Y7H0 255 aa9.31□□□□□ -0.92
USP54-204ENST00000422491 Q6ZSR6 202 aa9.31□□□□□ -0.92
USP54-204ENST00000422491 P4HA3Q7Z4N8 544 aa9.31□□□□□ -0.92
USP54-204ENST00000422491 SLC22A18ASQ8N1D0 253 aa9.31□□□□□ -0.92
USP54-204ENST00000422491 OR5C1Q8NGR4 320 aa9.31□□□□□ -0.92
USP54-204ENST00000422491 TMEM234Q8WY98 164 aa9.31□□□□□ -0.92
USP54-204ENST00000422491 HAS2Q92819 552 aa9.31□□□□□ -0.92
USP54-204ENST00000422491 GABRG3Q99928 467 aa9.31□□□□□ -0.92
USP54-204ENST00000422491 ATG101Q9BSB4 218 aa9.31□□□□□ -0.92
USP54-204ENST00000422491 FAAP24Q9BTP7 215 aa9.31□□□□□ -0.92
USP54-204ENST00000422491 ANGPTL4Q9BY76 406 aa9.31□□□□□ -0.92
USP54-204ENST00000422491 PLEKHF2Q9H8W4 249 aa9.31□□□□□ -0.92
USP54-204ENST00000422491 ELL3Q9HB65 397 aaPredicted RBP9.31□□□□□ -0.92
USP54-204ENST00000422491 LYRM2Q9NU23 88 aaPredicted RBP9.31□□□□□ -0.92
USP54-204ENST00000422491 MMACHCQ9Y4U1 282 aa9.31□□□□□ -0.92
USP54-204ENST00000422491 RP1P56715 2156 aa9.31□□□□□ -0.92
USP54-204ENST00000422491 A0A1W2PNV4 684 aa9.3□□□□□ -0.92
USP54-204ENST00000422491 ONECUT2O95948 504 aa9.3□□□□□ -0.92
USP54-204ENST00000422491 TNFP01375 233 aa9.3□□□□□ -0.92
USP54-204ENST00000422491 HBE1P02100 147 aa9.3□□□□□ -0.92
USP54-204ENST00000422491 PGA3P0DJD8 388 aa9.3□□□□□ -0.92
USP54-204ENST00000422491 MDKP21741 143 aaPredicted RBP9.3□□□□□ -0.92
USP54-204ENST00000422491 NTSR1P30989 418 aa9.3□□□□□ -0.92
USP54-204ENST00000422491 YPEL5P62699 121 aa9.3□□□□□ -0.92
USP54-204ENST00000422491 TFF2Q03403 129 aa9.3□□□□□ -0.92
USP54-204ENST00000422491 ZNF542PQ5EBM4 170 aa9.3□□□□□ -0.92
USP54-204ENST00000422491 ZNF283Q8N7M2 679 aa9.3□□□□□ -0.92
USP54-204ENST00000422491 OR1P1Q8NH06 330 aa9.3□□□□□ -0.92
USP54-204ENST00000422491 GNPNAT1Q96EK6 184 aaPredicted RBP9.3□□□□□ -0.92
USP54-204ENST00000422491 TP53RKQ96S44 253 aa9.3□□□□□ -0.92
USP54-204ENST00000422491 ZNF581Q9P0T4 197 aa9.3□□□□□ -0.92
USP54-204ENST00000422491 ATG2AQ2TAZ0 1938 aa9.3□□□□□ -0.92
USP54-204ENST00000422491 NKX2-6A6NCS4 301 aa9.3□□□□□ -0.92
USP54-204ENST00000422491 LIPT2A6NK58 231 aa9.3□□□□□ -0.92
USP54-204ENST00000422491 CDS2O95674 445 aa9.3□□□□□ -0.92
USP54-204ENST00000422491 OPN1MWP04001 364 aa9.3□□□□□ -0.92
USP54-204ENST00000422491 OPN1MW2P0DN77 364 aa9.3□□□□□ -0.92
USP54-204ENST00000422491 OPN1MW3P0DN78 364 aa9.3□□□□□ -0.92
USP54-204ENST00000422491 DTYMKP23919 212 aa9.3□□□□□ -0.92
USP54-204ENST00000422491 TLE4Q04727 773 aa9.3□□□□□ -0.92
USP54-204ENST00000422491 C9orf50Q5SZB4 431 aa9.3□□□□□ -0.92
USP54-204ENST00000422491 C1orf53Q5VUE5 145 aa9.3□□□□□ -0.92
USP54-204ENST00000422491 LANCL3Q6ZV70 420 aa9.3□□□□□ -0.92
USP54-204ENST00000422491 CPEB2Q7Z5Q1 589 aaKnown RBP9.3□□□□□ -0.92
USP54-204ENST00000422491 ZNF441Q8N8Z8 693 aa9.3□□□□□ -0.92
USP54-204ENST00000422491 NAXEQ8NCW5 288 aa9.3□□□□□ -0.92
USP54-204ENST00000422491 NOXO1Q8NFA2 376 aa9.3□□□□□ -0.92
USP54-204ENST00000422491 CABLES2Q9BTV7 478 aa9.3□□□□□ -0.92
USP54-204ENST00000422491 SNHG12Q9BXW3 62 aa9.3□□□□□ -0.92
USP54-204ENST00000422491 METTL9Q9H1A3 318 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms