RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 CPEB3Q8NE35 698 aaKnown RBP10.54□□□□□ -0.72
HMGB1-206ENST00000405805 HLA-CQ95604 372 aa10.54□□□□□ -0.72
HMGB1-206ENST00000405805 MCHR2Q969V1 340 aa10.54□□□□□ -0.72
HMGB1-206ENST00000405805 GNRHR2Q96P88 292 aa10.54□□□□□ -0.72
HMGB1-206ENST00000405805 SERTAD4Q9NUC0 356 aa10.54□□□□□ -0.72
HMGB1-206ENST00000405805 MYOTQ9UBF9 498 aa10.54□□□□□ -0.72
HMGB1-206ENST00000405805 PADI1Q9ULC6 663 aa10.54□□□□□ -0.72
HMGB1-206ENST00000405805 NPTNQ9Y639 398 aa10.54□□□□□ -0.72
HMGB1-206ENST00000405805 DNAH14Q0VDD8 3507 aa10.54□□□□□ -0.72
HMGB1-206ENST00000405805 MEX3AA1L020 520 aaKnown RBP10.54□□□□□ -0.72
HMGB1-206ENST00000405805 K7ERU9 68 aa10.54□□□□□ -0.72
HMGB1-206ENST00000405805 JTBO76095 146 aa10.54□□□□□ -0.72
HMGB1-206ENST00000405805 CST7O76096 145 aa10.54□□□□□ -0.72
HMGB1-206ENST00000405805 TOX4O94842 621 aa10.54□□□□□ -0.72
HMGB1-206ENST00000405805 ZNF728P0DKX0 622 aa10.54□□□□□ -0.72
HMGB1-206ENST00000405805 TAS2R46P59540 309 aa10.54□□□□□ -0.72
HMGB1-206ENST00000405805 LPAL2Q16609 132 aa10.54□□□□□ -0.72
HMGB1-206ENST00000405805 TRIM61Q5EBN2 209 aa10.54□□□□□ -0.72
HMGB1-206ENST00000405805 ADPRHL1Q8NDY3 354 aa10.54□□□□□ -0.72
HMGB1-206ENST00000405805 OR14L1PQ8NHC6 308 aa10.54□□□□□ -0.72
HMGB1-206ENST00000405805 RAB24Q969Q5 203 aa10.54□□□□□ -0.72
HMGB1-206ENST00000405805 HIST1H2AAQ96QV6 131 aa10.54□□□□□ -0.72
HMGB1-206ENST00000405805 GPHA2Q96T91 129 aa10.54□□□□□ -0.72
HMGB1-206ENST00000405805 DUSP15Q9H1R2 295 aaPredicted RBP10.54□□□□□ -0.72
HMGB1-206ENST00000405805 LHX6Q9UPM6 363 aa10.54□□□□□ -0.72
HMGB1-206ENST00000405805 COL4A4P53420 1690 aaPredicted RBP10.54□□□□□ -0.72
HMGB1-206ENST00000405805 A0A1B0GX78 115 aa10.53□□□□□ -0.72
HMGB1-206ENST00000405805 ALG1L2C9J202 215 aa10.53□□□□□ -0.72
HMGB1-206ENST00000405805 G3V3Q6 166 aa10.53□□□□□ -0.72
HMGB1-206ENST00000405805 ABHD16AO95870 558 aa10.53□□□□□ -0.72
HMGB1-206ENST00000405805 ACTL6AO96019 429 aa10.53□□□□□ -0.72
HMGB1-206ENST00000405805 HINT1P49773 126 aaPredicted RBP10.53□□□□□ -0.72
HMGB1-206ENST00000405805 KHDC3LQ587J8 217 aa10.53□□□□□ -0.72
HMGB1-206ENST00000405805 ZNF343Q6P1L6 599 aa10.53□□□□□ -0.72
HMGB1-206ENST00000405805 ZNF880Q6PDB4 577 aa10.53□□□□□ -0.72
HMGB1-206ENST00000405805 SLC25A42Q86VD7 318 aa10.53□□□□□ -0.72
HMGB1-206ENST00000405805 C2orf50Q96LR7 162 aa10.53□□□□□ -0.72
HMGB1-206ENST00000405805 FBXL17Q9UF56 701 aa10.53□□□□□ -0.72
HMGB1-206ENST00000405805 KCNS2Q9ULS6 477 aa10.53□□□□□ -0.72
HMGB1-206ENST00000405805 NBASA2RRP1 2371 aa10.53□□□□□ -0.72
HMGB1-206ENST00000405805 ELOA3CA0A087WX78 387 aaPredicted RBP10.53□□□□□ -0.72
HMGB1-206ENST00000405805 TRBV5-7A0A0A0MS05 114 aa10.53□□□□□ -0.72
HMGB1-206ENST00000405805 PMS2P1A4D2B8 440 aa10.53□□□□□ -0.72
HMGB1-206ENST00000405805 TP53I11O14683 189 aa10.53□□□□□ -0.72
HMGB1-206ENST00000405805 SMPD2O60906 423 aa10.53□□□□□ -0.72
HMGB1-206ENST00000405805 HIST1H1BP16401 226 aaKnown RBP10.53□□□□□ -0.72
HMGB1-206ENST00000405805 HIST1H1DP16402 221 aaKnown RBP10.53□□□□□ -0.72
HMGB1-206ENST00000405805 HTR5AP47898 357 aa10.53□□□□□ -0.72
HMGB1-206ENST00000405805 KISS1Q15726 138 aa10.53□□□□□ -0.72
HMGB1-206ENST00000405805 TEX30Q5JUR7 227 aa10.53□□□□□ -0.72
HMGB1-206ENST00000405805 LY6G6FQ5SQ64 297 aa10.53□□□□□ -0.72
HMGB1-206ENST00000405805 DRAM2Q6UX65 266 aa10.53□□□□□ -0.72
HMGB1-206ENST00000405805 VN1R17PQ8TDU5 208 aa10.53□□□□□ -0.72
HMGB1-206ENST00000405805 REG4Q9BYZ8 158 aa10.53□□□□□ -0.72
HMGB1-206ENST00000405805 LPAR3Q9UBY5 353 aa10.53□□□□□ -0.72
HMGB1-206ENST00000405805 EFSO43281 561 aa10.53□□□□□ -0.72
HMGB1-206ENST00000405805 MMP9P14780 707 aa10.53□□□□□ -0.72
HMGB1-206ENST00000405805 MST1P26927 711 aa10.53□□□□□ -0.72
HMGB1-206ENST00000405805 ARL6IP1Q15041 203 aa10.53□□□□□ -0.72
HMGB1-206ENST00000405805 RNF144BQ7Z419 303 aa10.53□□□□□ -0.72
HMGB1-206ENST00000405805 OR1N1Q8NGS0 311 aa10.53□□□□□ -0.72
HMGB1-206ENST00000405805 OR8U1Q8NH10 309 aa10.53□□□□□ -0.72
HMGB1-206ENST00000405805 PIK3IP1Q96FE7 263 aa10.53□□□□□ -0.72
HMGB1-206ENST00000405805 PPP1R14DQ9NXH3 145 aa10.53□□□□□ -0.72
HMGB1-206ENST00000405805 PTRH2Q9Y3E5 179 aaKnown RBP10.53□□□□□ -0.72
HMGB1-206ENST00000405805 WSB1Q9Y6I7 421 aa10.53□□□□□ -0.72
HMGB1-206ENST00000405805 CD27P26842 260 aa10.52□□□□□ -0.72
HMGB1-206ENST00000405805 PLCXD3Q63HM9 321 aa10.52□□□□□ -0.72
HMGB1-206ENST00000405805 OR10AD1Q8NGE0 317 aa10.52□□□□□ -0.72
HMGB1-206ENST00000405805 OR8B12Q8NGG6 310 aa10.52□□□□□ -0.72
HMGB1-206ENST00000405805 ZFAND5O76080 213 aa10.52□□□□□ -0.73
HMGB1-206ENST00000405805 SOD3P08294 240 aa10.52□□□□□ -0.73
HMGB1-206ENST00000405805 PNLIPRP2P54317 469 aa10.52□□□□□ -0.73
HMGB1-206ENST00000405805 TMEM33P57088 247 aa10.52□□□□□ -0.73
HMGB1-206ENST00000405805 SIGLECL1Q8N7X8 197 aa10.52□□□□□ -0.73
HMGB1-206ENST00000405805 ZNF524Q96C55 264 aa10.52□□□□□ -0.73
HMGB1-206ENST00000405805 RBMXL1Q96E39 390 aaKnown RBP10.52□□□□□ -0.73
HMGB1-206ENST00000405805 OR10C1Q96KK4 312 aa10.52□□□□□ -0.73
HMGB1-206ENST00000405805 SYT3Q9BQG1 590 aa10.52□□□□□ -0.73
HMGB1-206ENST00000405805 ZDHHC11Q9H8X9 412 aa10.52□□□□□ -0.73
HMGB1-206ENST00000405805 ZNF586Q9NXT0 402 aa10.52□□□□□ -0.73
HMGB1-206ENST00000405805 BET1LQ9NYM9 111 aa10.52□□□□□ -0.73
HMGB1-206ENST00000405805 OR6C3Q9NZP0 311 aa10.52□□□□□ -0.73
HMGB1-206ENST00000405805 RCL1Q9Y2P8 373 aaKnown RBP10.52□□□□□ -0.73
HMGB1-206ENST00000405805 DENND4CQ5VZ89 1909 aa10.52□□□□□ -0.73
HMGB1-206ENST00000405805 F6UZH7 168 aa10.52□□□□□ -0.73
HMGB1-206ENST00000405805 ONECUT2O95948 504 aa10.52□□□□□ -0.73
HMGB1-206ENST00000405805 PMCHP20382 165 aa10.52□□□□□ -0.73
HMGB1-206ENST00000405805 ZBTB25P24278 435 aa10.52□□□□□ -0.73
HMGB1-206ENST00000405805 FHITP49789 147 aa10.52□□□□□ -0.73
HMGB1-206ENST00000405805 NUBP1P53384 320 aa10.52□□□□□ -0.73
HMGB1-206ENST00000405805 NUTF2P61970 127 aaKnown RBP10.52□□□□□ -0.73
HMGB1-206ENST00000405805 ZNF92Q03936 586 aa10.52□□□□□ -0.73
HMGB1-206ENST00000405805 HERPUD1Q15011 391 aa10.52□□□□□ -0.73
HMGB1-206ENST00000405805 TMEM183BQ1AE95 376 aa10.52□□□□□ -0.73
HMGB1-206ENST00000405805 PLAC9Q5JTB6 97 aa10.52□□□□□ -0.73
HMGB1-206ENST00000405805 CLEC2AQ6UVW9 174 aa10.52□□□□□ -0.73
HMGB1-206ENST00000405805 PLXDC2Q6UX71 529 aa10.52□□□□□ -0.73
HMGB1-206ENST00000405805 VASH2Q86V25 355 aa10.52□□□□□ -0.73
HMGB1-206ENST00000405805 CMTM1Q8IZ96 169 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 80.8 ms