RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 LRRC18Q8N456 261 aa3.21□□□□□ -1.9
HMGB1-204ENST00000399489 BEST4Q8NFU0 473 aa3.21□□□□□ -1.9
HMGB1-204ENST00000399489 OR4F15Q8NGB8 312 aa3.21□□□□□ -1.9
HMGB1-204ENST00000399489 OR4C13Q8NGP0 309 aa3.21□□□□□ -1.9
HMGB1-204ENST00000399489 OR2A12Q8NGT7 310 aa3.21□□□□□ -1.9
HMGB1-204ENST00000399489 C11orf40Q8WZ69 217 aa3.21□□□□□ -1.9
HMGB1-204ENST00000399489 MRPL48Q96GC5 212 aaKnown RBP3.21□□□□□ -1.9
HMGB1-204ENST00000399489 CLEC7AQ9BXN2 247 aa3.21□□□□□ -1.9
HMGB1-204ENST00000399489 DKKL1Q9UK85 242 aa3.21□□□□□ -1.9
HMGB1-204ENST00000399489 HSPB11Q9Y547 144 aa3.21□□□□□ -1.9
HMGB1-204ENST00000399489 ALG5Q9Y673 324 aa3.21□□□□□ -1.9
HMGB1-204ENST00000399489 PLEKHG1Q9ULL1 1385 aa3.21□□□□□ -1.9
HMGB1-204ENST00000399489 ATRNO75882 1429 aa3.21□□□□□ -1.9
HMGB1-204ENST00000399489 FYCO1Q9BQS8 1478 aa3.21□□□□□ -1.9
HMGB1-204ENST00000399489 KDM5AP29375 1690 aaKnown RBP3.21□□□□□ -1.9
HMGB1-204ENST00000399489 EFCAB6Q5THR3 1501 aa3.2□□□□□ -1.9
HMGB1-204ENST00000399489 BLMP54132 1417 aaPredicted RBP3.2□□□□□ -1.9
HMGB1-204ENST00000399489 IGLV1-36A0A0B4J1U3 117 aa3.2□□□□□ -1.9
HMGB1-204ENST00000399489 A0A0B4J2A0 478 aa3.2□□□□□ -1.9
HMGB1-204ENST00000399489 A0A1B0GVG6 124 aa3.2□□□□□ -1.9
HMGB1-204ENST00000399489 PQLC2LA1A4F0 135 aa3.2□□□□□ -1.9
HMGB1-204ENST00000399489 SMIM9A6NGZ8 99 aa3.2□□□□□ -1.9
HMGB1-204ENST00000399489 F5H5K5 113 aa3.2□□□□□ -1.9
HMGB1-204ENST00000399489 UGT2B11O75310 529 aa3.2□□□□□ -1.9
HMGB1-204ENST00000399489 RP2O75695 350 aa3.2□□□□□ -1.9
HMGB1-204ENST00000399489 KLF8O95600 359 aaPredicted RBP3.2□□□□□ -1.9
HMGB1-204ENST00000399489 SEMA4FO95754 770 aa3.2□□□□□ -1.9
HMGB1-204ENST00000399489 RENP00797 406 aa3.2□□□□□ -1.9
HMGB1-204ENST00000399489 FBP1P09467 338 aa3.2□□□□□ -1.9
HMGB1-204ENST00000399489 SMIM6P0DI80 62 aa3.2□□□□□ -1.9
HMGB1-204ENST00000399489 IGLL1P15814 213 aa3.2□□□□□ -1.9
HMGB1-204ENST00000399489 VDAC1P21796 283 aa3.2□□□□□ -1.9
HMGB1-204ENST00000399489 F2RP25116 425 aa3.2□□□□□ -1.9
HMGB1-204ENST00000399489 S100GP29377 79 aa3.2□□□□□ -1.9
HMGB1-204ENST00000399489 ERP29P30040 261 aaKnown RBP3.2□□□□□ -1.9
HMGB1-204ENST00000399489 CCR7P32248 378 aa3.2□□□□□ -1.9
HMGB1-204ENST00000399489 CA5AP35218 305 aa3.2□□□□□ -1.9
HMGB1-204ENST00000399489 KRTAP10-5P60370 271 aa3.2□□□□□ -1.9
HMGB1-204ENST00000399489 CYCSP99999 105 aaKnown RBP3.2□□□□□ -1.9
HMGB1-204ENST00000399489 SLC10A1Q14973 349 aa3.2□□□□□ -1.9
HMGB1-204ENST00000399489 ZNF146Q15072 292 aa3.2□□□□□ -1.9
HMGB1-204ENST00000399489 ZNF774Q6NX45 483 aa3.2□□□□□ -1.9
HMGB1-204ENST00000399489 OLIG3Q7RTU3 272 aa3.2□□□□□ -1.9
HMGB1-204ENST00000399489 DEFB132Q7Z7B7 95 aa3.2□□□□□ -1.9
HMGB1-204ENST00000399489 THOC6Q86W42 341 aaKnown RBP3.2□□□□□ -1.9
HMGB1-204ENST00000399489 C17orf82Q86X59 251 aaPredicted RBP3.2□□□□□ -1.9
HMGB1-204ENST00000399489 NIT1Q86X76 327 aa3.2□□□□□ -1.9
HMGB1-204ENST00000399489 GPD1LQ8N335 351 aa3.2□□□□□ -1.9
HMGB1-204ENST00000399489 ZADH2Q8N4Q0 377 aa3.2□□□□□ -1.9
HMGB1-204ENST00000399489 RFLNBQ8N5W9 214 aa3.2□□□□□ -1.9
HMGB1-204ENST00000399489 GPR32P1Q8NGA4 272 aa3.2□□□□□ -1.9
HMGB1-204ENST00000399489 OR10G3Q8NGC4 313 aa3.2□□□□□ -1.9
HMGB1-204ENST00000399489 HAUS1Q96CS2 278 aa3.2□□□□□ -1.9
HMGB1-204ENST00000399489 DOK1Q99704 481 aa3.2□□□□□ -1.9
HMGB1-204ENST00000399489 TCEAL7Q9BRU2 100 aa3.2□□□□□ -1.9
HMGB1-204ENST00000399489 RIOK2Q9BVS4 552 aaKnown RBP3.2□□□□□ -1.9
HMGB1-204ENST00000399489 OCR1Q9BZK8 76 aa3.2□□□□□ -1.9
HMGB1-204ENST00000399489 MS4A6AQ9H2W1 248 aa3.2□□□□□ -1.9
HMGB1-204ENST00000399489 PARLQ9H300 379 aa3.2□□□□□ -1.9
HMGB1-204ENST00000399489 RPF2Q9H7B2 306 aaKnown RBP3.2□□□□□ -1.9
HMGB1-204ENST00000399489 EXOSC4Q9NPD3 245 aaKnown RBP3.2□□□□□ -1.9
HMGB1-204ENST00000399489 FAM206AQ9NX38 181 aa3.2□□□□□ -1.9
HMGB1-204ENST00000399489 THAP10Q9P2Z0 257 aaPredicted RBP3.2□□□□□ -1.9
HMGB1-204ENST00000399489 SHPKQ9UHJ6 478 aa3.2□□□□□ -1.9
HMGB1-204ENST00000399489 SLC7A11Q9UPY5 501 aa3.2□□□□□ -1.9
HMGB1-204ENST00000399489 C14orf166Q9Y224 244 aaKnown RBP3.2□□□□□ -1.9
HMGB1-204ENST00000399489 UBIAD1Q9Y5Z9 338 aa3.2□□□□□ -1.9
HMGB1-204ENST00000399489 GOLGB1Q14789 3259 aaKnown RBP3.2□□□□□ -1.9
HMGB1-204ENST00000399489 ASXL1Q8IXJ9 1541 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 DCCP43146 1447 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 OR6C6A6NF89 314 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 FAM189A1O60320 539 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 CRLF1O75462 422 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 CGAP01215 116 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 CD48P09326 243 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 OR10J4P0C629 311 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 C1GALT1C1LP0DN25 315 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 ANOS1P23352 680 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 GABRR1P24046 479 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 TALDO1P37837 337 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 SULT1A1P50225 295 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 SULT1A2P50226 295 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 NDUFV3P56181 108 aaKnown RBP3.19□□□□□ -1.9
HMGB1-204ENST00000399489 TCL1AP56279 114 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 RAB25P57735 213 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 IL5RAQ01344 420 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 BAXQ07812 192 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 ZNF763Q0D2J5 394 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 SYT6Q5T7P8 510 aaPredicted RBP3.19□□□□□ -1.9
HMGB1-204ENST00000399489 ANGPTL5Q86XS5 388 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 GATD1Q8NB37 220 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 OR52E4Q8NGH9 312 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 OR10A6Q8NH74 314 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 NT5CQ8TCD5 201 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 SDR42E1Q8WUS8 393 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 TNFAIP8L1Q8WVP5 186 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 DDIT4LQ96D03 193 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 L3HYPDHQ96EM0 354 aa3.19□□□□□ -1.9
HMGB1-204ENST00000399489 CPNE2Q96FN4 548 aaPredicted RBP3.19□□□□□ -1.9
HMGB1-204ENST00000399489 OR10C1Q96KK4 312 aa3.19□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms