RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 SURF2Q15527 256 aaPredicted RBP11.53□□□□□ -0.56
CCDC3-202ENST00000378839 FOXRED2Q8IWF2 684 aa11.53□□□□□ -0.56
CCDC3-202ENST00000378839 ZNF611Q8N823 705 aa11.53□□□□□ -0.56
CCDC3-202ENST00000378839 BPIFCQ8NFQ6 507 aa11.53□□□□□ -0.56
CCDC3-202ENST00000378839 OR56B2PQ8NGI1 322 aa11.53□□□□□ -0.56
CCDC3-202ENST00000378839 PHYHIPLQ96FC7 376 aa11.53□□□□□ -0.56
CCDC3-202ENST00000378839 PRDM14Q9GZV8 571 aa11.53□□□□□ -0.56
CCDC3-202ENST00000378839 PLA2G2EQ9NZK7 142 aa11.53□□□□□ -0.56
CCDC3-202ENST00000378839 TRBV23-1A0A0A0MS06 115 aa11.52□□□□□ -0.57
CCDC3-202ENST00000378839 ZNF816-ZNF321PA0A0X1KG74 233 aa11.52□□□□□ -0.57
CCDC3-202ENST00000378839 C5orf49A4QMS7 147 aa11.52□□□□□ -0.57
CCDC3-202ENST00000378839 KRBOX1C9JBD0 128 aa11.52□□□□□ -0.57
CCDC3-202ENST00000378839 CTSDP07339 412 aaPredicted RBP11.52□□□□□ -0.57
CCDC3-202ENST00000378839 FAM157CP0CG43 387 aa11.52□□□□□ -0.57
CCDC3-202ENST00000378839 CTAG1AP78358 180 aa11.52□□□□□ -0.57
CCDC3-202ENST00000378839 OR2A2Q6IF42 318 aa11.52□□□□□ -0.57
CCDC3-202ENST00000378839 SLC25A26Q70HW3 274 aa11.52□□□□□ -0.57
CCDC3-202ENST00000378839 OR11L1Q8NGX0 322 aa11.52□□□□□ -0.57
CCDC3-202ENST00000378839 SCGB3A2Q96PL1 93 aa11.52□□□□□ -0.57
CCDC3-202ENST00000378839 GPR87Q9BY21 358 aa11.52□□□□□ -0.57
CCDC3-202ENST00000378839 PCDHB10Q9UN67 800 aa11.52□□□□□ -0.57
CCDC3-202ENST00000378839 DNAJC13O75165 2243 aa11.52□□□□□ -0.57
CCDC3-202ENST00000378839 FGF16O43320 207 aa11.52□□□□□ -0.57
CCDC3-202ENST00000378839 RBM11P57052 281 aaKnown RBP11.52□□□□□ -0.57
CCDC3-202ENST00000378839 B2MP61769 119 aa11.52□□□□□ -0.57
CCDC3-202ENST00000378839 SLC22A25Q6T423 547 aa11.52□□□□□ -0.57
CCDC3-202ENST00000378839 TFAP2EQ6VUC0 442 aa11.52□□□□□ -0.57
CCDC3-202ENST00000378839 SLC30A7Q8NEW0 376 aa11.52□□□□□ -0.57
CCDC3-202ENST00000378839 TMED6Q8WW62 240 aa11.52□□□□□ -0.57
CCDC3-202ENST00000378839 TOMM40LQ969M1 308 aa11.52□□□□□ -0.57
CCDC3-202ENST00000378839 REPIN1Q9BWE0 567 aaKnown RBP11.52□□□□□ -0.57
CCDC3-202ENST00000378839 SLC5A7Q9GZV3 580 aa11.52□□□□□ -0.57
CCDC3-202ENST00000378839 RGCCQ9H4X1 137 aa11.52□□□□□ -0.57
CCDC3-202ENST00000378839 IL36GQ9NZH8 169 aa11.52□□□□□ -0.57
CCDC3-202ENST00000378839 ZNF175Q9Y473 711 aa11.52□□□□□ -0.57
CCDC3-202ENST00000378839 SHANK1Q9Y566 2161 aa11.52□□□□□ -0.57
CCDC3-202ENST00000378839 PIGPP57054 158 aa11.51□□□□□ -0.57
CCDC3-202ENST00000378839 CYCSP99999 105 aaKnown RBP11.51□□□□□ -0.57
CCDC3-202ENST00000378839 RNFT1Q5M7Z0 435 aa11.51□□□□□ -0.57
CCDC3-202ENST00000378839 LINC00470Q9BZP3 86 aa11.51□□□□□ -0.57
CCDC3-202ENST00000378839 C14orf166Q9Y224 244 aaKnown RBP11.51□□□□□ -0.57
CCDC3-202ENST00000378839 BCL3P20749 454 aa11.51□□□□□ -0.57
CCDC3-202ENST00000378839 FXYD4P59646 89 aa11.51□□□□□ -0.57
CCDC3-202ENST00000378839 S100A10P60903 97 aa11.51□□□□□ -0.57
CCDC3-202ENST00000378839 SLC16A13Q7RTY0 426 aa11.51□□□□□ -0.57
CCDC3-202ENST00000378839 CBLN2Q8IUK8 224 aa11.51□□□□□ -0.57
CCDC3-202ENST00000378839 NANPQ8TBE9 248 aa11.51□□□□□ -0.57
CCDC3-202ENST00000378839 BSCL2Q96G97 398 aaPredicted RBP11.51□□□□□ -0.57
CCDC3-202ENST00000378839 AQP10Q96PS8 301 aa11.51□□□□□ -0.57
CCDC3-202ENST00000378839 TMEM100Q9NV29 134 aa11.51□□□□□ -0.57
CCDC3-202ENST00000378839 TAS2R3Q9NYW6 316 aa11.51□□□□□ -0.57
CCDC3-202ENST00000378839 PRSS50Q9UI38 385 aa11.51□□□□□ -0.57
CCDC3-202ENST00000378839 STARD10Q9Y365 291 aa11.51□□□□□ -0.57
CCDC3-202ENST00000378839 PQLC2LA1A4F0 135 aa11.51□□□□□ -0.57
CCDC3-202ENST00000378839 C21orf140B9A014 251 aa11.51□□□□□ -0.57
CCDC3-202ENST00000378839 RPL36A-HNRNPH2H7BZ11 118 aa11.51□□□□□ -0.57
CCDC3-202ENST00000378839 WISP2O76076 250 aa11.51□□□□□ -0.57
CCDC3-202ENST00000378839 HKR1P10072 659 aa11.51□□□□□ -0.57
CCDC3-202ENST00000378839 RCC1P18754 421 aaPredicted RBP11.51□□□□□ -0.57
CCDC3-202ENST00000378839 DTYMKP23919 212 aa11.51□□□□□ -0.57
CCDC3-202ENST00000378839 MST1LQ2TV78 715 aa11.51□□□□□ -0.57
CCDC3-202ENST00000378839 GGNBP1Q5YKI7 109 aa11.51□□□□□ -0.57
CCDC3-202ENST00000378839 CLEC9AQ6UXN8 241 aa11.51□□□□□ -0.57
CCDC3-202ENST00000378839 SLAMF9Q96A28 289 aa11.51□□□□□ -0.57
CCDC3-202ENST00000378839 ASF1BQ9NVP2 202 aa11.51□□□□□ -0.57
CCDC3-202ENST00000378839 KNTC1P50748 2209 aa11.5□□□□□ -0.57
CCDC3-202ENST00000378839 XRCC2O43543 280 aa11.5□□□□□ -0.57
CCDC3-202ENST00000378839 SS18L1O75177 396 aaPredicted RBP11.5□□□□□ -0.57
CCDC3-202ENST00000378839 TNFSF15O95150 251 aa11.5□□□□□ -0.57
CCDC3-202ENST00000378839 OR5AC1P0C628 307 aa11.5□□□□□ -0.57
CCDC3-202ENST00000378839 ZNF806P0C7X5 589 aa11.5□□□□□ -0.57
CCDC3-202ENST00000378839 FCGR2CP31995 323 aa11.5□□□□□ -0.57
CCDC3-202ENST00000378839 ARL6IP1Q15041 203 aa11.5□□□□□ -0.57
CCDC3-202ENST00000378839 IAH1Q2TAA2 248 aaPredicted RBP11.5□□□□□ -0.57
CCDC3-202ENST00000378839 PHLDA2Q53GA4 152 aa11.5□□□□□ -0.57
CCDC3-202ENST00000378839 FAM209BQ5JX69 171 aa11.5□□□□□ -0.57
CCDC3-202ENST00000378839 RTL6Q6ICC9 239 aa11.5□□□□□ -0.57
CCDC3-202ENST00000378839 BAP18Q8IXM2 172 aa11.5□□□□□ -0.57
CCDC3-202ENST00000378839 MDS2Q8NDY4 140 aa11.5□□□□□ -0.57
CCDC3-202ENST00000378839 BCO1Q9HAY6 547 aa11.5□□□□□ -0.57
CCDC3-202ENST00000378839 NECAP2Q9NVZ3 263 aa11.5□□□□□ -0.57
CCDC3-202ENST00000378839 ZNF391Q9UJN7 358 aa11.5□□□□□ -0.57
CCDC3-202ENST00000378839 DOCK7Q96N67 2140 aa11.5□□□□□ -0.57
CCDC3-202ENST00000378839 GPR31O00270 319 aa11.5□□□□□ -0.57
CCDC3-202ENST00000378839 FARS2O95363 451 aaKnown RBP11.5□□□□□ -0.57
CCDC3-202ENST00000378839 ACTL6AO96019 429 aa11.5□□□□□ -0.57
CCDC3-202ENST00000378839 CD79AP11912 226 aa11.5□□□□□ -0.57
CCDC3-202ENST00000378839 MEOX1P50221 254 aa11.5□□□□□ -0.57
CCDC3-202ENST00000378839 GPM6AP51674 278 aa11.5□□□□□ -0.57
CCDC3-202ENST00000378839 PRDX4Q13162 271 aa11.5□□□□□ -0.57
CCDC3-202ENST00000378839 TMEM187Q14656 261 aa11.5□□□□□ -0.57
CCDC3-202ENST00000378839 TGIF1Q15583 401 aa11.5□□□□□ -0.57
CCDC3-202ENST00000378839 NRN1LQ496H8 165 aa11.5□□□□□ -0.57
CCDC3-202ENST00000378839 HES3Q5TGS1 186 aa11.5□□□□□ -0.57
CCDC3-202ENST00000378839 PAPOLGQ9BWT3 736 aaKnown RBP11.5□□□□□ -0.57
CCDC3-202ENST00000378839 DNTTIP1Q9H147 329 aa11.5□□□□□ -0.57
CCDC3-202ENST00000378839 ZNF552Q9H707 407 aaPredicted RBP11.5□□□□□ -0.57
CCDC3-202ENST00000378839 SLC7A11Q9UPY5 501 aa11.5□□□□□ -0.57
CCDC3-202ENST00000378839 LINC00587B1AMM8 73 aa11.49□□□□□ -0.57
CCDC3-202ENST00000378839 PDCD6O75340 191 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms