RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 MIA3Q5JRA6 1907 aa1.07□□□□□ -2.24
VPS13A-206ENST00000376646 ZNF879B4DU55 563 aa1.07□□□□□ -2.24
VPS13A-206ENST00000376646 COX7A2P2O60397 106 aa1.07□□□□□ -2.24
VPS13A-206ENST00000376646 PFN1P07737 140 aaKnown RBP1.07□□□□□ -2.24
VPS13A-206ENST00000376646 TEAD1P28347 426 aa1.07□□□□□ -2.24
VPS13A-206ENST00000376646 IMPA1P29218 277 aa1.07□□□□□ -2.24
VPS13A-206ENST00000376646 SLC6A1P30531 599 aa1.07□□□□□ -2.24
VPS13A-206ENST00000376646 RAB38P57729 211 aa1.07□□□□□ -2.24
VPS13A-206ENST00000376646 RPS11P62280 158 aaKnown RBP eCLIP1.07□□□□□ -2.24
VPS13A-206ENST00000376646 VSNL1P62760 191 aa1.07□□□□□ -2.24
VPS13A-206ENST00000376646 IL15RAQ13261 267 aa1.07□□□□□ -2.24
VPS13A-206ENST00000376646 LINC00303Q3SY05 128 aa1.07□□□□□ -2.24
VPS13A-206ENST00000376646 ZNF404Q494X3 552 aa1.07□□□□□ -2.24
VPS13A-206ENST00000376646 CLLU1OSQ5K130 101 aa1.07□□□□□ -2.24
VPS13A-206ENST00000376646 TMEM69Q5SWH9 247 aa1.07□□□□□ -2.24
VPS13A-206ENST00000376646 FA2HQ7L5A8 372 aa1.07□□□□□ -2.24
VPS13A-206ENST00000376646 SSX6Q7RTT6 188 aa1.07□□□□□ -2.24
VPS13A-206ENST00000376646 LINC00596Q86U02 117 aa1.07□□□□□ -2.24
VPS13A-206ENST00000376646 CDRT4Q8N9R6 151 aa1.07□□□□□ -2.24
VPS13A-206ENST00000376646 ZNF680Q8NEM1 530 aa1.07□□□□□ -2.24
VPS13A-206ENST00000376646 ZNF555Q8NEP9 628 aa1.07□□□□□ -2.24
VPS13A-206ENST00000376646 OR2K2Q8NGT1 345 aa1.07□□□□□ -2.24
VPS13A-206ENST00000376646 OR8K3Q8NH51 312 aa1.07□□□□□ -2.24
VPS13A-206ENST00000376646 OR2AE1Q8NHA4 323 aa1.07□□□□□ -2.24
VPS13A-206ENST00000376646 PPP1R36Q96LQ0 422 aa1.07□□□□□ -2.24
VPS13A-206ENST00000376646 LHX5Q9H2C1 402 aa1.07□□□□□ -2.24
VPS13A-206ENST00000376646 POMKQ9H5K3 350 aa1.07□□□□□ -2.24
VPS13A-206ENST00000376646 VSIRQ9H7M9 311 aa1.07□□□□□ -2.24
VPS13A-206ENST00000376646 HMGXB4Q9UGU5 601 aa1.07□□□□□ -2.24
VPS13A-206ENST00000376646 CYB5R1Q9UHQ9 305 aa1.07□□□□□ -2.24
VPS13A-206ENST00000376646 POFUT2Q9Y2G5 429 aa1.07□□□□□ -2.24
VPS13A-206ENST00000376646 ZNF780BQ9Y6R6 833 aa1.07□□□□□ -2.24
VPS13A-206ENST00000376646 KIR2DS1A0A191URI9 304 aa1.06□□□□□ -2.24
VPS13A-206ENST00000376646 OR6C70A6NIJ9 312 aa1.06□□□□□ -2.24
VPS13A-206ENST00000376646 C9JQL5 133 aa1.06□□□□□ -2.24
VPS13A-206ENST00000376646 RGS5O15539 181 aa1.06□□□□□ -2.24
VPS13A-206ENST00000376646 CST4P01036 141 aa1.06□□□□□ -2.24
VPS13A-206ENST00000376646 IGKV5-2P06315 115 aa1.06□□□□□ -2.24
VPS13A-206ENST00000376646 SNRPAP09012 282 aaKnown RBP1.06□□□□□ -2.24
VPS13A-206ENST00000376646 RNASE2P10153 161 aaKnown RBP1.06□□□□□ -2.24
VPS13A-206ENST00000376646 NUDT2P50583 147 aa1.06□□□□□ -2.24
VPS13A-206ENST00000376646 CCL23P55773 120 aa1.06□□□□□ -2.24
VPS13A-206ENST00000376646 PRKCDQ05655 676 aa1.06□□□□□ -2.24
VPS13A-206ENST00000376646 STX3Q13277 289 aa1.06□□□□□ -2.24
VPS13A-206ENST00000376646 TMEM241Q24JQ0 296 aa1.06□□□□□ -2.24
VPS13A-206ENST00000376646 ATP6AP1LQ52LC2 224 aa1.06□□□□□ -2.24
VPS13A-206ENST00000376646 UBE2NLQ5JXB2 153 aa1.06□□□□□ -2.24
VPS13A-206ENST00000376646 FAM104BQ5XKR9 115 aa1.06□□□□□ -2.24
VPS13A-206ENST00000376646 HBMQ6B0K9 141 aa1.06□□□□□ -2.24
VPS13A-206ENST00000376646 ZNF773Q6PK81 442 aa1.06□□□□□ -2.24
VPS13A-206ENST00000376646 CYP4Z1Q86W10 505 aa1.06□□□□□ -2.24
VPS13A-206ENST00000376646 TCAIMQ8N3R3 496 aa1.06□□□□□ -2.24
VPS13A-206ENST00000376646 SPERTQ8NA61 448 aa1.06□□□□□ -2.24
VPS13A-206ENST00000376646 ZFP62Q8NB50 900 aaPredicted RBP1.06□□□□□ -2.24
VPS13A-206ENST00000376646 C1orf64Q8NEQ6 169 aa1.06□□□□□ -2.24
VPS13A-206ENST00000376646 OR6K3Q8NGY3 331 aa1.06□□□□□ -2.24
VPS13A-206ENST00000376646 UBA3Q8TBC4 463 aa1.06□□□□□ -2.24
VPS13A-206ENST00000376646 CATSPER2Q96P56 530 aa1.06□□□□□ -2.24
VPS13A-206ENST00000376646 PEBP4Q96S96 227 aa1.06□□□□□ -2.24
VPS13A-206ENST00000376646 SHANK2-AS3Q9BTD1 123 aa1.06□□□□□ -2.24
VPS13A-206ENST00000376646 THTPAQ9BU02 230 aa1.06□□□□□ -2.24
VPS13A-206ENST00000376646 ANGPTL4Q9BY76 406 aa1.06□□□□□ -2.24
VPS13A-206ENST00000376646 RDH14Q9HBH5 336 aa1.06□□□□□ -2.24
VPS13A-206ENST00000376646 FAM60AQ9NP50 221 aa1.06□□□□□ -2.24
VPS13A-206ENST00000376646 IFT46Q9NQC8 304 aa1.06□□□□□ -2.24
VPS13A-206ENST00000376646 DNAJC27Q9NZQ0 273 aa1.06□□□□□ -2.24
VPS13A-206ENST00000376646 RBM12B-AS1Q9P1G2 102 aa1.06□□□□□ -2.24
VPS13A-206ENST00000376646 MRM2Q9UI43 246 aaKnown RBP1.06□□□□□ -2.24
VPS13A-206ENST00000376646 DYSFO75923 2080 aa1.06□□□□□ -2.24
VPS13A-206ENST00000376646 ERICH4A6NGS2 130 aa1.06□□□□□ -2.24
VPS13A-206ENST00000376646 ZNF233A6NK53 670 aa1.06□□□□□ -2.24
VPS13A-206ENST00000376646 UPK2O00526 184 aa1.06□□□□□ -2.24
VPS13A-206ENST00000376646 FFAR1O14842 300 aa1.06□□□□□ -2.24
VPS13A-206ENST00000376646 KCNK2O95069 426 aa1.06□□□□□ -2.24
VPS13A-206ENST00000376646 IL12BP29460 328 aa1.06□□□□□ -2.24
VPS13A-206ENST00000376646 MAGEA3P43357 314 aa1.06□□□□□ -2.24
VPS13A-206ENST00000376646 KRTAP12-3P60328 96 aa1.06□□□□□ -2.24
VPS13A-206ENST00000376646 FMODQ06828 376 aa1.06□□□□□ -2.24
VPS13A-206ENST00000376646 BNIP2Q12982 314 aa1.06□□□□□ -2.24
VPS13A-206ENST00000376646 TRAM1Q15629 374 aa1.06□□□□□ -2.24
VPS13A-206ENST00000376646 Q6ZT83 130 aa1.06□□□□□ -2.24
VPS13A-206ENST00000376646 AHSA2Q719I0 299 aa1.06□□□□□ -2.24
VPS13A-206ENST00000376646 TMEM144Q7Z5S9 345 aa1.06□□□□□ -2.24
VPS13A-206ENST00000376646 GALNT10Q86SR1 603 aa1.06□□□□□ -2.24
VPS13A-206ENST00000376646 NELFBQ8WX92 580 aa1.06□□□□□ -2.24
VPS13A-206ENST00000376646 CCDC124Q96CT7 223 aaKnown RBP1.06□□□□□ -2.24
VPS13A-206ENST00000376646 ZMYND19Q96E35 227 aaPredicted RBP1.06□□□□□ -2.24
VPS13A-206ENST00000376646 CFAP53Q96M91 514 aa1.06□□□□□ -2.24
VPS13A-206ENST00000376646 ZNF436Q9C0F3 470 aaPredicted RBP1.06□□□□□ -2.24
VPS13A-206ENST00000376646 DIABLOQ9NR28 239 aa1.06□□□□□ -2.24
VPS13A-206ENST00000376646 INIPQ9NRY2 104 aa1.06□□□□□ -2.24
VPS13A-206ENST00000376646 TAC3Q9UHF0 121 aa1.06□□□□□ -2.24
VPS13A-206ENST00000376646 ENPP5Q9UJA9 477 aa1.06□□□□□ -2.24
VPS13A-206ENST00000376646 SLC22A14Q9Y267 594 aa1.06□□□□□ -2.24
VPS13A-206ENST00000376646 PLXNB3Q9ULL4 1909 aa1.06□□□□□ -2.24
VPS13A-206ENST00000376646 SHANK1Q9Y566 2161 aa1.06□□□□□ -2.24
VPS13A-206ENST00000376646 GOLGA8QA0A0J9YX86 632 aa1.05□□□□□ -2.24
VPS13A-206ENST00000376646 A0A1B0GXF2 115 aa1.05□□□□□ -2.24
VPS13A-206ENST00000376646 VGLL3A8MV65 326 aa1.05□□□□□ -2.24
VPS13A-206ENST00000376646 H3BP45 60 aa1.05□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms