RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 NDUFS6O75380 124 aaKnown RBP18.38■□□□□ 0.53
UPF3A-202ENST00000375299 ATP6V0CP27449 155 aa18.38■□□□□ 0.53
UPF3A-202ENST00000375299 OTX1P32242 354 aaPredicted RBP18.38■□□□□ 0.53
UPF3A-202ENST00000375299 TMEM176BQ3YBM2 270 aaPredicted RBP18.38■□□□□ 0.53
UPF3A-202ENST00000375299 C9orf152Q5JTZ5 239 aa18.38■□□□□ 0.53
UPF3A-202ENST00000375299 OR2C3Q8N628 320 aa18.38■□□□□ 0.53
UPF3A-202ENST00000375299 OR11L1Q8NGX0 322 aa18.38■□□□□ 0.53
UPF3A-202ENST00000375299 DYRK2Q92630 601 aa18.38■□□□□ 0.53
UPF3A-202ENST00000375299 ZNF799Q96GE5 643 aa18.38■□□□□ 0.53
UPF3A-202ENST00000375299 DOK5Q9P104 306 aa18.38■□□□□ 0.53
UPF3A-202ENST00000375299 A0A087WWC5 75 aa18.37■□□□□ 0.53
UPF3A-202ENST00000375299 DUX1O43812 170 aa18.37■□□□□ 0.53
UPF3A-202ENST00000375299 RSPO4Q2I0M5 234 aaPredicted RBP18.37■□□□□ 0.53
UPF3A-202ENST00000375299 FAM69BQ5VUD6 431 aa18.37■□□□□ 0.53
UPF3A-202ENST00000375299 SLC35G3Q8N808 338 aa18.37■□□□□ 0.53
UPF3A-202ENST00000375299 OR14L1PQ8NHC6 308 aa18.37■□□□□ 0.53
UPF3A-202ENST00000375299 SLAMF9Q96A28 289 aa18.37■□□□□ 0.53
UPF3A-202ENST00000375299 SPSB1Q96BD6 273 aa18.37■□□□□ 0.53
UPF3A-202ENST00000375299 C11orf1Q9H5F2 150 aa18.37■□□□□ 0.53
UPF3A-202ENST00000375299 OPA3Q9H6K4 179 aa18.37■□□□□ 0.53
UPF3A-202ENST00000375299 GAR1Q9NY12 217 aaKnown RBP18.37■□□□□ 0.53
UPF3A-202ENST00000375299 RFNGQ9Y644 331 aa18.37■□□□□ 0.53
UPF3A-202ENST00000375299 ADAMTS20P59510 1910 aa18.37■□□□□ 0.53
UPF3A-202ENST00000375299 BTBD17A6NE02 478 aa18.37■□□□□ 0.53
UPF3A-202ENST00000375299 FAM24AA6NFZ4 105 aa18.37■□□□□ 0.53
UPF3A-202ENST00000375299 SRP19P09132 144 aaKnown RBP18.37■□□□□ 0.53
UPF3A-202ENST00000375299 DBHP09172 617 aa18.37■□□□□ 0.53
UPF3A-202ENST00000375299 TAGLN2P37802 199 aaKnown RBP18.37■□□□□ 0.53
UPF3A-202ENST00000375299 HIST1H3AP68431 136 aa18.37■□□□□ 0.53
UPF3A-202ENST00000375299 ZNF674Q2M3X9 581 aa18.37■□□□□ 0.53
UPF3A-202ENST00000375299 PHYHD1Q5SRE7 291 aa18.37■□□□□ 0.53
UPF3A-202ENST00000375299 C10orf128Q5T292 105 aa18.37■□□□□ 0.53
UPF3A-202ENST00000375299 HIST2H3PS2Q5TEC6 136 aa18.37■□□□□ 0.53
UPF3A-202ENST00000375299 CCDC71LQ8N9Z2 235 aa18.37■□□□□ 0.53
UPF3A-202ENST00000375299 ZFP62Q8NB50 900 aaPredicted RBP18.37■□□□□ 0.53
UPF3A-202ENST00000375299 MOB3AQ96BX8 217 aa18.37■□□□□ 0.53
UPF3A-202ENST00000375299 ABHD14AQ9BUJ0 271 aa18.37■□□□□ 0.53
UPF3A-202ENST00000375299 KIAA1456Q9P272 454 aa18.37■□□□□ 0.53
UPF3A-202ENST00000375299 HSD17B6O14756 317 aa18.36■□□□□ 0.53
UPF3A-202ENST00000375299 PITX3O75364 302 aa18.36■□□□□ 0.53
UPF3A-202ENST00000375299 UCP3P55916 312 aa18.36■□□□□ 0.53
UPF3A-202ENST00000375299 RND3P61587 244 aa18.36■□□□□ 0.53
UPF3A-202ENST00000375299 ELOBQ15370 118 aa18.36■□□□□ 0.53
UPF3A-202ENST00000375299 C20orf196Q8IYI0 205 aa18.36■□□□□ 0.53
UPF3A-202ENST00000375299 FBXL14Q8N1E6 418 aa18.36■□□□□ 0.53
UPF3A-202ENST00000375299 ZNF610Q8N9Z0 462 aa18.36■□□□□ 0.53
UPF3A-202ENST00000375299 Q8WTZ3 238 aa18.36■□□□□ 0.53
UPF3A-202ENST00000375299 NABP1Q96AH0 204 aa18.36■□□□□ 0.53
UPF3A-202ENST00000375299 CDRT15L2A8MXV6 281 aa18.35■□□□□ 0.53
UPF3A-202ENST00000375299 CXCL1P09341 107 aa18.35■□□□□ 0.53
UPF3A-202ENST00000375299 UBE2KP61086 200 aa18.35■□□□□ 0.53
UPF3A-202ENST00000375299 HNRNPKP61978 463 aaKnown RBP eCLIP18.35■□□□□ 0.53
UPF3A-202ENST00000375299 SNAI3Q3KNW1 292 aa18.35■□□□□ 0.53
UPF3A-202ENST00000375299 FOXL2NBQ6ZUU3 175 aa18.35■□□□□ 0.53
UPF3A-202ENST00000375299 OR5L2Q8NGL0 311 aa18.35■□□□□ 0.53
UPF3A-202ENST00000375299 WDR77Q9BQA1 342 aaPredicted RBP18.35■□□□□ 0.53
UPF3A-202ENST00000375299 PARPBPQ9NWS1 579 aa18.35■□□□□ 0.53
UPF3A-202ENST00000375299 SEMA5BQ9P283 1151 aa18.35■□□□□ 0.53
UPF3A-202ENST00000375299 FAM230AA0A1W2PPH8 454 aa18.35■□□□□ 0.53
UPF3A-202ENST00000375299 IGSF23A1L1A6 192 aa18.35■□□□□ 0.53
UPF3A-202ENST00000375299 HAGHQ16775 308 aa18.35■□□□□ 0.53
UPF3A-202ENST00000375299 ZNF343Q6P1L6 599 aa18.35■□□□□ 0.53
UPF3A-202ENST00000375299 MEX3BQ6ZN04 569 aaKnown RBP18.35■□□□□ 0.53
UPF3A-202ENST00000375299 TMEM54Q969K7 222 aa18.35■□□□□ 0.53
UPF3A-202ENST00000375299 SGK3Q96BR1 496 aa18.35■□□□□ 0.53
UPF3A-202ENST00000375299 ZNF286AQ9HBT8 521 aa18.35■□□□□ 0.53
UPF3A-202ENST00000375299 SPEGQ15772 3267 aa18.35■□□□□ 0.53
UPF3A-202ENST00000375299 ZNF383Q8NA42 475 aa18.34■□□□□ 0.53
UPF3A-202ENST00000375299 UNC13CQ8NB66 2214 aa18.34■□□□□ 0.53
UPF3A-202ENST00000375299 TP53RKQ96S44 253 aa18.34■□□□□ 0.53
UPF3A-202ENST00000375299 IGLV3-12A0A075B6K2 115 aa18.34■□□□□ 0.53
UPF3A-202ENST00000375299 IGKV1-27A0A075B6S5 117 aa18.34■□□□□ 0.53
UPF3A-202ENST00000375299 FAM221AA4D161 298 aa18.34■□□□□ 0.53
UPF3A-202ENST00000375299 ZNF724A8MTY0 619 aa18.34■□□□□ 0.53
UPF3A-202ENST00000375299 H0YL77 283 aa18.34■□□□□ 0.53
UPF3A-202ENST00000375299 CDS2O95674 445 aa18.34■□□□□ 0.53
UPF3A-202ENST00000375299 SPTSSAQ969W0 71 aa18.34■□□□□ 0.53
UPF3A-202ENST00000375299 INTS12Q96CB8 462 aaKnown RBP18.34■□□□□ 0.53
UPF3A-202ENST00000375299 BCO1Q9HAY6 547 aa18.34■□□□□ 0.53
UPF3A-202ENST00000375299 PLEK2Q9NYT0 353 aa18.34■□□□□ 0.53
UPF3A-202ENST00000375299 LIPGQ9Y5X9 500 aa18.34■□□□□ 0.53
UPF3A-202ENST00000375299 ASXL3Q9C0F0 2248 aa18.33■□□□□ 0.53
UPF3A-202ENST00000375299 CEBPGP53567 150 aa18.33■□□□□ 0.53
UPF3A-202ENST00000375299 DLK1P80370 383 aa18.33■□□□□ 0.53
UPF3A-202ENST00000375299 SHBQ15464 509 aa18.33■□□□□ 0.53
UPF3A-202ENST00000375299 CDPF1Q6NVV7 123 aa18.33■□□□□ 0.53
UPF3A-202ENST00000375299 BRICD5Q6PL45 260 aa18.33■□□□□ 0.53
UPF3A-202ENST00000375299 OR10AD1Q8NGE0 317 aa18.33■□□□□ 0.53
UPF3A-202ENST00000375299 ZNF700Q9H0M5 742 aa18.33■□□□□ 0.53
UPF3A-202ENST00000375299 TCFL5Q9UL49 500 aa18.33■□□□□ 0.53
UPF3A-202ENST00000375299 NKX2-6A6NCS4 301 aa18.33■□□□□ 0.52
UPF3A-202ENST00000375299 TERTO14746 1132 aaKnown RBP18.33■□□□□ 0.52
UPF3A-202ENST00000375299 GEMIN2O14893 280 aaKnown RBP18.33■□□□□ 0.52
UPF3A-202ENST00000375299 GPX4P36969 197 aaPredicted RBP18.33■□□□□ 0.52
UPF3A-202ENST00000375299 NOVA1P51513 510 aaKnown RBP18.33■□□□□ 0.52
UPF3A-202ENST00000375299 HERV-K104P61576 105 aa18.33■□□□□ 0.52
UPF3A-202ENST00000375299 CNN3Q15417 329 aaKnown RBP18.33■□□□□ 0.52
UPF3A-202ENST00000375299 RHBDD2Q6NTF9 364 aa18.33■□□□□ 0.52
UPF3A-202ENST00000375299 ZNF429Q86V71 674 aa18.33■□□□□ 0.52
UPF3A-202ENST00000375299 JSRP1Q96MG2 331 aaPredicted RBP18.33■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms