RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 PIGLQ9Y2B2 252 aa11.95□□□□□ -0.5
USP49-201ENST00000373006 H3BMH7 237 aa11.95□□□□□ -0.5
USP49-201ENST00000373006 SPRY1O43609 319 aaPredicted RBP11.95□□□□□ -0.5
USP49-201ENST00000373006 ZNF728P0DKX0 622 aa11.95□□□□□ -0.5
USP49-201ENST00000373006 ZNF25P17030 456 aaPredicted RBP11.95□□□□□ -0.5
USP49-201ENST00000373006 ZNF43P17038 809 aa11.95□□□□□ -0.5
USP49-201ENST00000373006 SUMF1Q8NBK3 374 aa11.95□□□□□ -0.5
USP49-201ENST00000373006 SLC38A9Q8NBW4 561 aa11.95□□□□□ -0.5
USP49-201ENST00000373006 PARPBPQ9NWS1 579 aa11.95□□□□□ -0.5
USP49-201ENST00000373006 A0A087WZY1 265 aa11.95□□□□□ -0.5
USP49-201ENST00000373006 NSG1A0A0A6YYJ2 146 aa11.95□□□□□ -0.5
USP49-201ENST00000373006 CCDC163A0A0D9SF12 145 aa11.95□□□□□ -0.5
USP49-201ENST00000373006 OR5H15A6NDH6 313 aa11.95□□□□□ -0.5
USP49-201ENST00000373006 F10P00742 488 aa11.95□□□□□ -0.5
USP49-201ENST00000373006 DRD1P21728 446 aa11.95□□□□□ -0.5
USP49-201ENST00000373006 TAGLN2P37802 199 aaKnown RBP11.95□□□□□ -0.5
USP49-201ENST00000373006 AFF3P51826 1226 aaKnown RBP11.95□□□□□ -0.5
USP49-201ENST00000373006 LSM6P62312 80 aaKnown RBP11.95□□□□□ -0.5
USP49-201ENST00000373006 TMEM187Q14656 261 aa11.95□□□□□ -0.5
USP49-201ENST00000373006 PDCD1Q15116 288 aa11.95□□□□□ -0.5
USP49-201ENST00000373006 KHDC3LQ587J8 217 aa11.95□□□□□ -0.5
USP49-201ENST00000373006 MEX3BQ6ZN04 569 aaKnown RBP11.95□□□□□ -0.5
USP49-201ENST00000373006 CLEC1BQ9P126 229 aa11.95□□□□□ -0.5
USP49-201ENST00000373006 NPIPB13A6NJU9 1138 aa11.94□□□□□ -0.5
USP49-201ENST00000373006 NPIPB4C9JG80 1138 aa11.94□□□□□ -0.5
USP49-201ENST00000373006 H0YL77 283 aa11.94□□□□□ -0.5
USP49-201ENST00000373006 H3BQ15 152 aa11.94□□□□□ -0.5
USP49-201ENST00000373006 TRGC2P03986 189 aa11.94□□□□□ -0.5
USP49-201ENST00000373006 SOD3P08294 240 aa11.94□□□□□ -0.5
USP49-201ENST00000373006 DBHP09172 617 aa11.94□□□□□ -0.5
USP49-201ENST00000373006 CXCL1P09341 107 aa11.94□□□□□ -0.5
USP49-201ENST00000373006 OR1D5P58170 312 aa11.94□□□□□ -0.5
USP49-201ENST00000373006 TLE1Q04724 770 aa11.94□□□□□ -0.5
USP49-201ENST00000373006 OR2T2Q6IF00 324 aa11.94□□□□□ -0.5
USP49-201ENST00000373006 ZNF574Q6ZN55 896 aaPredicted RBP11.94□□□□□ -0.5
USP49-201ENST00000373006 REC114Q7Z4M0 266 aa11.94□□□□□ -0.5
USP49-201ENST00000373006 KDF1Q8NAX2 398 aaPredicted RBP11.94□□□□□ -0.5
USP49-201ENST00000373006 RAB39BQ96DA2 213 aa11.94□□□□□ -0.5
USP49-201ENST00000373006 NAA60Q9H7X0 242 aa11.94□□□□□ -0.5
USP49-201ENST00000373006 AK3Q9UIJ7 227 aa11.94□□□□□ -0.5
USP49-201ENST00000373006 FAM24AA6NFZ4 105 aa11.94□□□□□ -0.5
USP49-201ENST00000373006 TRAF3IP2O43734 574 aaPredicted RBP11.94□□□□□ -0.5
USP49-201ENST00000373006 CCL1P22362 96 aa11.94□□□□□ -0.5
USP49-201ENST00000373006 CDX1P47902 265 aaPredicted RBP11.94□□□□□ -0.5
USP49-201ENST00000373006 ZNF41P51814 821 aaPredicted RBP11.94□□□□□ -0.5
USP49-201ENST00000373006 MUCL1Q96DR8 90 aa11.94□□□□□ -0.5
USP49-201ENST00000373006 SNX22Q96L94 193 aa11.94□□□□□ -0.5
USP49-201ENST00000373006 ZNF700Q9H0M5 742 aa11.94□□□□□ -0.5
USP49-201ENST00000373006 CCDC187A0A096LP49 1063 aa11.93□□□□□ -0.5
USP49-201ENST00000373006 CSNK1A1P48729 337 aa11.93□□□□□ -0.5
USP49-201ENST00000373006 MRPS21P82921 87 aaKnown RBP11.93□□□□□ -0.5
USP49-201ENST00000373006 SLC25A47Q6Q0C1 308 aa11.93□□□□□ -0.5
USP49-201ENST00000373006 OR2G3Q8NGZ4 309 aa11.93□□□□□ -0.5
USP49-201ENST00000373006 Q8WTZ3 238 aa11.93□□□□□ -0.5
USP49-201ENST00000373006 YPEL4Q96NS1 127 aa11.93□□□□□ -0.5
USP49-201ENST00000373006 GPR173Q9NS66 373 aa11.93□□□□□ -0.5
USP49-201ENST00000373006 RALGAPA1Q6GYQ0 2036 aa11.93□□□□□ -0.5
USP49-201ENST00000373006 RBFOX3A6NFN3 312 aa11.93□□□□□ -0.5
USP49-201ENST00000373006 CCDC85CA6NKD9 419 aa11.93□□□□□ -0.5
USP49-201ENST00000373006 ST8SIA3O43173 380 aa11.93□□□□□ -0.5
USP49-201ENST00000373006 PHF1O43189 567 aaPredicted RBP11.93□□□□□ -0.5
USP49-201ENST00000373006 ONECUT2O95948 504 aa11.93□□□□□ -0.5
USP49-201ENST00000373006 APLNRP35414 380 aa11.93□□□□□ -0.5
USP49-201ENST00000373006 MTCP1P56278 107 aa11.93□□□□□ -0.5
USP49-201ENST00000373006 SPCS3P61009 180 aa11.93□□□□□ -0.5
USP49-201ENST00000373006 RAB1AP62820 205 aa11.93□□□□□ -0.5
USP49-201ENST00000373006 ANKRD39Q53RE8 183 aa11.93□□□□□ -0.5
USP49-201ENST00000373006 CHST5Q9GZS9 411 aa11.93□□□□□ -0.5
USP49-201ENST00000373006 NELFAQ9H3P2 528 aa11.93□□□□□ -0.5
USP49-201ENST00000373006 STRAPQ9Y3F4 350 aaKnown RBP11.93□□□□□ -0.5
USP49-201ENST00000373006 TGIF2-C20orf24A0A0A6YYL0 155 aa11.93□□□□□ -0.5
USP49-201ENST00000373006 FAM230AA0A1W2PPH8 454 aa11.93□□□□□ -0.5
USP49-201ENST00000373006 UBE2KP61086 200 aa11.93□□□□□ -0.5
USP49-201ENST00000373006 GPR157Q5UAW9 335 aa11.93□□□□□ -0.5
USP49-201ENST00000373006 POC1BQ8TC44 478 aa11.93□□□□□ -0.5
USP49-201ENST00000373006 SLC2A9Q9NRM0 540 aa11.93□□□□□ -0.5
USP49-201ENST00000373006 IL17BQ9UHF5 180 aa11.93□□□□□ -0.5
USP49-201ENST00000373006 LIPGQ9Y5X9 500 aa11.93□□□□□ -0.5
USP49-201ENST00000373006 ADAMTS9Q9P2N4 1935 aa11.92□□□□□ -0.5
USP49-201ENST00000373006 A0A1W2PPC4 97 aa11.92□□□□□ -0.5
USP49-201ENST00000373006 GEMIN2O14893 280 aaKnown RBP11.92□□□□□ -0.5
USP49-201ENST00000373006 EREGO14944 169 aa11.92□□□□□ -0.5
USP49-201ENST00000373006 SUCLG1P53597 346 aaKnown RBP11.92□□□□□ -0.5
USP49-201ENST00000373006 ERVFRD-1P60508 538 aa11.92□□□□□ -0.5
USP49-201ENST00000373006 RND3P61587 244 aa11.92□□□□□ -0.5
USP49-201ENST00000373006 RPP30P78346 268 aaKnown RBP11.92□□□□□ -0.5
USP49-201ENST00000373006 TMEM176BQ3YBM2 270 aaPredicted RBP11.92□□□□□ -0.5
USP49-201ENST00000373006 C1QL4Q86Z23 238 aa11.92□□□□□ -0.5
USP49-201ENST00000373006 BATF2Q8N1L9 274 aa11.92□□□□□ -0.5
USP49-201ENST00000373006 HAS2Q92819 552 aa11.92□□□□□ -0.5
USP49-201ENST00000373006 WFIKKN1Q96NZ8 548 aa11.92□□□□□ -0.5
USP49-201ENST00000373006 TM2D1Q9BX74 207 aa11.92□□□□□ -0.5
USP49-201ENST00000373006 MAGT1Q9H0U3 335 aa11.92□□□□□ -0.5
USP49-201ENST00000373006 MMP17Q9ULZ9 603 aa11.92□□□□□ -0.5
USP49-201ENST00000373006 FREM2Q5SZK8 3169 aa11.92□□□□□ -0.5
USP49-201ENST00000373006 A0A1B0GWJ7 208 aa11.92□□□□□ -0.5
USP49-201ENST00000373006 A0A1W2PNV4 684 aa11.92□□□□□ -0.5
USP49-201ENST00000373006 LILRA5A6NI73 299 aa11.92□□□□□ -0.5
USP49-201ENST00000373006 K7N7A8 449 aa11.92□□□□□ -0.5
USP49-201ENST00000373006 NXPH3O95157 252 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms