RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 VSIG8P0DPA2 414 aa7.78□□□□□ -1.16
USP4-202ENST00000351842 PTBP1P26599 531 aaKnown RBP eCLIP7.78□□□□□ -1.16
USP4-202ENST00000351842 RFX2P48378 723 aa7.78□□□□□ -1.16
USP4-202ENST00000351842 ASAH1Q13510 395 aa7.78□□□□□ -1.16
USP4-202ENST00000351842 IGSF11Q5DX21 431 aa7.78□□□□□ -1.16
USP4-202ENST00000351842 SPANXN2Q5MJ10 180 aa7.78□□□□□ -1.16
USP4-202ENST00000351842 MBNL2Q5VZF2 373 aaKnown RBP7.78□□□□□ -1.16
USP4-202ENST00000351842 FAM131AQ6UXB0 335 aa7.78□□□□□ -1.16
USP4-202ENST00000351842 MKXQ8IYA7 352 aa7.78□□□□□ -1.16
USP4-202ENST00000351842 FAM169BQ8N8A8 192 aa7.78□□□□□ -1.16
USP4-202ENST00000351842 NUP37Q8NFH4 326 aa7.78□□□□□ -1.16
USP4-202ENST00000351842 OR4M1Q8NGD0 313 aa7.78□□□□□ -1.16
USP4-202ENST00000351842 OR6F1Q8NGZ6 308 aa7.78□□□□□ -1.16
USP4-202ENST00000351842 CXXC4Q9H2H0 198 aa7.78□□□□□ -1.16
USP4-202ENST00000351842 MS4A5Q9H3V2 200 aa7.78□□□□□ -1.16
USP4-202ENST00000351842 STEAP1Q9UHE8 339 aa7.78□□□□□ -1.16
USP4-202ENST00000351842 ZFHX3Q15911 3703 aa7.78□□□□□ -1.16
USP4-202ENST00000351842 TMEM272A0A1B0GTI8 110 aa7.78□□□□□ -1.16
USP4-202ENST00000351842 RFPL4AA6NLU0 287 aa7.78□□□□□ -1.16
USP4-202ENST00000351842 RFPL4AL1F8VTS6 287 aa7.78□□□□□ -1.16
USP4-202ENST00000351842 TMPRSS2O15393 492 aa7.78□□□□□ -1.16
USP4-202ENST00000351842 IGLV3-1P01715 115 aa7.78□□□□□ -1.16
USP4-202ENST00000351842 GNB3P16520 340 aa7.78□□□□□ -1.16
USP4-202ENST00000351842 IGFBP2P18065 325 aa7.78□□□□□ -1.16
USP4-202ENST00000351842 ELK1P19419 428 aa7.78□□□□□ -1.16
USP4-202ENST00000351842 GALP22466 123 aa7.78□□□□□ -1.16
USP4-202ENST00000351842 NKX2-5P52952 324 aaPredicted RBP7.78□□□□□ -1.16
USP4-202ENST00000351842 ATXN7L3Q14CW9 347 aaPredicted RBP7.78□□□□□ -1.16
USP4-202ENST00000351842 FIP1L1Q6UN15 594 aaKnown RBP7.78□□□□□ -1.16
USP4-202ENST00000351842 LHFPL2Q6ZUX7 228 aa7.78□□□□□ -1.16
USP4-202ENST00000351842 C6orf201Q7Z4U5 140 aa7.78□□□□□ -1.16
USP4-202ENST00000351842 ZNF573Q86YE8 665 aa7.78□□□□□ -1.16
USP4-202ENST00000351842 ZNRF1Q8ND25 227 aa7.78□□□□□ -1.16
USP4-202ENST00000351842 CCDC107Q8WV48 283 aa7.78□□□□□ -1.16
USP4-202ENST00000351842 EGLN1Q9GZT9 426 aa7.78□□□□□ -1.16
USP4-202ENST00000351842 PPA2Q9H2U2 334 aa7.78□□□□□ -1.16
USP4-202ENST00000351842 GCM1Q9NP62 436 aa7.78□□□□□ -1.16
USP4-202ENST00000351842 C14orf119Q9NWQ9 140 aa7.78□□□□□ -1.16
USP4-202ENST00000351842 SLC17A2O00624 439 aa7.78□□□□□ -1.16
USP4-202ENST00000351842 SOCS1O15524 211 aa7.78□□□□□ -1.16
USP4-202ENST00000351842 ALX3O95076 343 aa7.78□□□□□ -1.16
USP4-202ENST00000351842 IGFBP3P17936 291 aaPredicted RBP7.78□□□□□ -1.16
USP4-202ENST00000351842 CD53P19397 219 aa7.78□□□□□ -1.16
USP4-202ENST00000351842 KITLGP21583 273 aa7.78□□□□□ -1.16
USP4-202ENST00000351842 LOXP28300 417 aaPredicted RBP7.78□□□□□ -1.16
USP4-202ENST00000351842 BLVRBP30043 206 aaPredicted RBP7.78□□□□□ -1.16
USP4-202ENST00000351842 PITPNBP48739 271 aa7.78□□□□□ -1.16
USP4-202ENST00000351842 GNG2P59768 71 aa7.78□□□□□ -1.16
USP4-202ENST00000351842 HFEQ30201 348 aa7.78□□□□□ -1.16
USP4-202ENST00000351842 CNIH2Q6PI25 160 aa7.78□□□□□ -1.16
USP4-202ENST00000351842 OR6M1Q8NGM8 313 aa7.78□□□□□ -1.16
USP4-202ENST00000351842 SPSB1Q96BD6 273 aa7.78□□□□□ -1.16
USP4-202ENST00000351842 PSMG3-AS1Q96PY0 264 aa7.78□□□□□ -1.16
USP4-202ENST00000351842 HDHD3Q9BSH5 251 aaPredicted RBP7.78□□□□□ -1.16
USP4-202ENST00000351842 TRAF4Q9BUZ4 470 aaPredicted RBP7.78□□□□□ -1.16
USP4-202ENST00000351842 ZNF442Q9H7R0 627 aa7.78□□□□□ -1.16
USP4-202ENST00000351842 CBLN4Q9NTU7 201 aa7.78□□□□□ -1.16
USP4-202ENST00000351842 FOXJ3Q9UPW0 622 aa7.78□□□□□ -1.16
USP4-202ENST00000351842 KLF2Q9Y5W3 355 aaPredicted RBP7.78□□□□□ -1.16
USP4-202ENST00000351842 IGLV3-9A0A075B6K5 115 aa7.77□□□□□ -1.17
USP4-202ENST00000351842 TRAV1-2A0A0B4J238 106 aa7.77□□□□□ -1.17
USP4-202ENST00000351842 MEGF11A6BM72 1044 aa7.77□□□□□ -1.17
USP4-202ENST00000351842 FAM172BPA6NC97 362 aa7.77□□□□□ -1.17
USP4-202ENST00000351842 TMEM235A6NFC5 223 aa7.77□□□□□ -1.17
USP4-202ENST00000351842 PMELP40967 661 aa7.77□□□□□ -1.17
USP4-202ENST00000351842 NR4A2P43354 598 aa7.77□□□□□ -1.17
USP4-202ENST00000351842 SRP9P49458 86 aaKnown RBP7.77□□□□□ -1.17
USP4-202ENST00000351842 EDDM3BP56851 147 aa7.77□□□□□ -1.17
USP4-202ENST00000351842 GUCA2AQ02747 115 aa7.77□□□□□ -1.17
USP4-202ENST00000351842 UNC119Q13432 240 aa7.77□□□□□ -1.17
USP4-202ENST00000351842 ARFRP1Q13795 201 aa7.77□□□□□ -1.17
USP4-202ENST00000351842 CMTM4Q8IZR5 234 aa7.77□□□□□ -1.17
USP4-202ENST00000351842 OR8H2Q8N162 312 aa7.77□□□□□ -1.17
USP4-202ENST00000351842 TMEM185AQ8NFB2 350 aa7.77□□□□□ -1.17
USP4-202ENST00000351842 OR5A2Q8NGI9 324 aa7.77□□□□□ -1.17
USP4-202ENST00000351842 CCL13Q99616 98 aa7.77□□□□□ -1.17
USP4-202ENST00000351842 METTL9Q9H1A3 318 aa7.77□□□□□ -1.17
USP4-202ENST00000351842 MIXL1Q9H2W2 232 aa7.77□□□□□ -1.17
USP4-202ENST00000351842 OPA3Q9H6K4 179 aa7.77□□□□□ -1.17
USP4-202ENST00000351842 METRNQ9UJH8 293 aa7.77□□□□□ -1.17
USP4-202ENST00000351842 IGHV1-69-2A0A0G2JMI3 117 aa7.77□□□□□ -1.17
USP4-202ENST00000351842 LOC390937A0A1W2PQ73 354 aa7.77□□□□□ -1.17
USP4-202ENST00000351842 LRP5LA4QPB2 252 aa7.77□□□□□ -1.17
USP4-202ENST00000351842 PTBP3O95758 552 aaKnown RBP7.77□□□□□ -1.17
USP4-202ENST00000351842 CST4P01036 141 aa7.77□□□□□ -1.17
USP4-202ENST00000351842 DAOP14920 347 aa7.77□□□□□ -1.17
USP4-202ENST00000351842 M6PRP20645 277 aa7.77□□□□□ -1.17
USP4-202ENST00000351842 TALDO1P37837 337 aa7.77□□□□□ -1.17
USP4-202ENST00000351842 PYDC2Q56P42 97 aa7.77□□□□□ -1.17
USP4-202ENST00000351842 WDR82Q6UXN9 313 aa7.77□□□□□ -1.17
USP4-202ENST00000351842 NKAIN3Q8N8D7 197 aa7.77□□□□□ -1.17
USP4-202ENST00000351842 ANGPTL6Q8NI99 470 aa7.77□□□□□ -1.17
USP4-202ENST00000351842 NUDCD2Q8WVJ2 157 aa7.77□□□□□ -1.17
USP4-202ENST00000351842 AQP3Q92482 292 aa7.77□□□□□ -1.17
USP4-202ENST00000351842 AP3S1Q92572 193 aa7.77□□□□□ -1.17
USP4-202ENST00000351842 ZNF486Q96H40 463 aaPredicted RBP7.77□□□□□ -1.17
USP4-202ENST00000351842 RAB1BQ9H0U4 201 aa7.77□□□□□ -1.17
USP4-202ENST00000351842 ZNF701Q9NV72 531 aaPredicted RBP7.77□□□□□ -1.17
USP4-202ENST00000351842 NIPBLQ6KC79 2804 aaeCLIP7.77□□□□□ -1.17
USP4-202ENST00000351842 A0A0G2JMP0 313 aa7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms