RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 SRPXP78539 464 aa13.84□□□□□ -0.19
HMGA1-202ENST00000347617 TLE3Q04726 772 aa13.84□□□□□ -0.19
HMGA1-202ENST00000347617 RSU1Q15404 277 aa13.84□□□□□ -0.19
HMGA1-202ENST00000347617 ABCA11PQ4W5N1 156 aa13.84□□□□□ -0.19
HMGA1-202ENST00000347617 ZNF506Q5JVG8 444 aa13.84□□□□□ -0.19
HMGA1-202ENST00000347617 LIAT1Q6ZQX7 453 aa13.84□□□□□ -0.19
HMGA1-202ENST00000347617 ZC3HAV1Q7Z2W4 902 aaKnown RBP13.84□□□□□ -0.19
HMGA1-202ENST00000347617 PRR22Q8IZ63 422 aa13.84□□□□□ -0.19
HMGA1-202ENST00000347617 LILRB2Q8N423 598 aa13.84□□□□□ -0.19
HMGA1-202ENST00000347617 OR8B12Q8NGG6 310 aa13.84□□□□□ -0.19
HMGA1-202ENST00000347617 C10orf35Q96D05 121 aa13.84□□□□□ -0.19
HMGA1-202ENST00000347617 C18orf12Q96KH6 178 aa13.84□□□□□ -0.19
HMGA1-202ENST00000347617 SYT3Q9BQG1 590 aa13.84□□□□□ -0.19
HMGA1-202ENST00000347617 STRADBQ9C0K7 418 aa13.84□□□□□ -0.19
HMGA1-202ENST00000347617 PARP12Q9H0J9 701 aaKnown RBP13.84□□□□□ -0.19
HMGA1-202ENST00000347617 NECAP2Q9NVZ3 263 aa13.84□□□□□ -0.19
HMGA1-202ENST00000347617 TMEM242Q9NWH2 141 aa13.84□□□□□ -0.19
HMGA1-202ENST00000347617 CDX4O14627 284 aaPredicted RBP13.83□□□□□ -0.19
HMGA1-202ENST00000347617 HIST1H2BKO60814 126 aa13.83□□□□□ -0.19
HMGA1-202ENST00000347617 PITX3O75364 302 aa13.83□□□□□ -0.19
HMGA1-202ENST00000347617 ZFAND5O76080 213 aa13.83□□□□□ -0.19
HMGA1-202ENST00000347617 HIST1H2BJP06899 126 aa13.83□□□□□ -0.19
HMGA1-202ENST00000347617 ZNF728P0DKX0 622 aa13.83□□□□□ -0.19
HMGA1-202ENST00000347617 CCL4P13236 92 aa13.83□□□□□ -0.19
HMGA1-202ENST00000347617 HIST1H2BOP23527 126 aa13.83□□□□□ -0.19
HMGA1-202ENST00000347617 HIST1H2BBP33778 126 aa13.83□□□□□ -0.19
HMGA1-202ENST00000347617 CEACAM6P40199 344 aa13.83□□□□□ -0.19
HMGA1-202ENST00000347617 HIST1H2BDP58876 126 aa13.83□□□□□ -0.19
HMGA1-202ENST00000347617 HIST1H2BCP62807 126 aa13.83□□□□□ -0.19
HMGA1-202ENST00000347617 POU3F1Q03052 451 aaPredicted RBP13.83□□□□□ -0.19
HMGA1-202ENST00000347617 HIST2H2BEQ16778 126 aa13.83□□□□□ -0.19
HMGA1-202ENST00000347617 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.83□□□□□ -0.19
HMGA1-202ENST00000347617 LCN10Q6JVE6 187 aa13.83□□□□□ -0.19
HMGA1-202ENST00000347617 PLXDC2Q6UX71 529 aa13.83□□□□□ -0.19
HMGA1-202ENST00000347617 FBXW12Q6X9E4 464 aa13.83□□□□□ -0.19
HMGA1-202ENST00000347617 TMEM182Q6ZP80 229 aaPredicted RBP13.83□□□□□ -0.19
HMGA1-202ENST00000347617 SHISA6Q6ZSJ9 500 aa13.83□□□□□ -0.19
HMGA1-202ENST00000347617 GALNTL5Q7Z4T8 443 aa13.83□□□□□ -0.19
HMGA1-202ENST00000347617 CCDC71LQ8N9Z2 235 aa13.83□□□□□ -0.19
HMGA1-202ENST00000347617 RNF138Q8WVD3 245 aa13.83□□□□□ -0.19
HMGA1-202ENST00000347617 PP6455Q8WZ26 134 aa13.83□□□□□ -0.19
HMGA1-202ENST00000347617 HIST1H2BHQ93079 126 aa13.83□□□□□ -0.19
HMGA1-202ENST00000347617 GNPNAT1Q96EK6 184 aaPredicted RBP13.83□□□□□ -0.19
HMGA1-202ENST00000347617 MARS2Q96GW9 593 aaKnown RBP13.83□□□□□ -0.19
HMGA1-202ENST00000347617 HIST1H2BNQ99877 126 aa13.83□□□□□ -0.19
HMGA1-202ENST00000347617 HIST1H2BMQ99879 126 aa13.83□□□□□ -0.19
HMGA1-202ENST00000347617 NIPSNAP3BQ9BS92 247 aa13.83□□□□□ -0.19
HMGA1-202ENST00000347617 SDHAF3Q9NRP4 125 aa13.83□□□□□ -0.19
HMGA1-202ENST00000347617 POLR1DQ9Y2S0 133 aa13.83□□□□□ -0.19
HMGA1-202ENST00000347617 C9J4A7 227 aa13.83□□□□□ -0.2
HMGA1-202ENST00000347617 HSD17B6O14756 317 aa13.83□□□□□ -0.2
HMGA1-202ENST00000347617 IGHEP01854 428 aa13.83□□□□□ -0.2
HMGA1-202ENST00000347617 ATXN8OSP0DMR3 200 aa13.83□□□□□ -0.2
HMGA1-202ENST00000347617 ZNF43P17038 809 aa13.83□□□□□ -0.2
HMGA1-202ENST00000347617 SERPINA2P20848 420 aa13.83□□□□□ -0.2
HMGA1-202ENST00000347617 PPP1CCP36873 323 aaKnown RBP13.83□□□□□ -0.2
HMGA1-202ENST00000347617 UCP3P55916 312 aa13.83□□□□□ -0.2
HMGA1-202ENST00000347617 FOXO1Q12778 655 aa13.83□□□□□ -0.2
HMGA1-202ENST00000347617 PNRC1Q12796 327 aaPredicted RBP13.83□□□□□ -0.2
HMGA1-202ENST00000347617 KISS1Q15726 138 aa13.83□□□□□ -0.2
HMGA1-202ENST00000347617 ZNF124Q15973 351 aa13.83□□□□□ -0.2
HMGA1-202ENST00000347617 BEND4Q6ZU67 534 aa13.83□□□□□ -0.2
HMGA1-202ENST00000347617 ZNF429Q86V71 674 aa13.83□□□□□ -0.2
HMGA1-202ENST00000347617 OR14K1Q8NGZ2 314 aa13.83□□□□□ -0.2
HMGA1-202ENST00000347617 OR14L1PQ8NHC6 308 aa13.83□□□□□ -0.2
HMGA1-202ENST00000347617 Q8WTZ3 238 aa13.83□□□□□ -0.2
HMGA1-202ENST00000347617 ANGPTL4Q9BY76 406 aa13.83□□□□□ -0.2
HMGA1-202ENST00000347617 SLC25A31Q9H0C2 315 aa13.83□□□□□ -0.2
HMGA1-202ENST00000347617 ZNF701Q9NV72 531 aaPredicted RBP13.83□□□□□ -0.2
HMGA1-202ENST00000347617 ANXA10Q9UJ72 324 aa13.83□□□□□ -0.2
HMGA1-202ENST00000347617 HSF4Q9ULV5 492 aa13.83□□□□□ -0.2
HMGA1-202ENST00000347617 LHFPL6Q9Y693 200 aa13.83□□□□□ -0.2
HMGA1-202ENST00000347617 TNFSF12-TNFSF13A0A0A6YY99 330 aa13.82□□□□□ -0.2
HMGA1-202ENST00000347617 IGKV1D-43A0A0B4J1Z2 117 aa13.82□□□□□ -0.2
HMGA1-202ENST00000347617 PRKNO60260 465 aaPredicted RBP13.82□□□□□ -0.2
HMGA1-202ENST00000347617 CDS2O95674 445 aa13.82□□□□□ -0.2
HMGA1-202ENST00000347617 CTSSP25774 331 aa13.82□□□□□ -0.2
HMGA1-202ENST00000347617 PIGPP57054 158 aa13.82□□□□□ -0.2
HMGA1-202ENST00000347617 ZNF121P58317 390 aaPredicted RBP13.82□□□□□ -0.2
HMGA1-202ENST00000347617 SPCS3P61009 180 aa13.82□□□□□ -0.2
HMGA1-202ENST00000347617 KHDC3LQ587J8 217 aa13.82□□□□□ -0.2
HMGA1-202ENST00000347617 DCAF12Q5T6F0 453 aa13.82□□□□□ -0.2
HMGA1-202ENST00000347617 C1orf87Q8N0U7 546 aa13.82□□□□□ -0.2
HMGA1-202ENST00000347617 DNAJA3Q96EY1 480 aa13.82□□□□□ -0.2
HMGA1-202ENST00000347617 RCC1LQ96I51 464 aaKnown RBP13.82□□□□□ -0.2
HMGA1-202ENST00000347617 NOL4LQ96MY1 436 aaPredicted RBP13.82□□□□□ -0.2
HMGA1-202ENST00000347617 SPACA5Q96QH8 159 aa13.82□□□□□ -0.2
HMGA1-202ENST00000347617 SPIN2AQ99865 258 aa13.82□□□□□ -0.2
HMGA1-202ENST00000347617 SPIN2BQ9BPZ2 258 aa13.82□□□□□ -0.2
HMGA1-202ENST00000347617 MRPL13Q9BYD1 178 aaKnown RBP13.82□□□□□ -0.2
HMGA1-202ENST00000347617 PTRH2Q9Y3E5 179 aaKnown RBP13.82□□□□□ -0.2
HMGA1-202ENST00000347617 ALPK2Q86TB3 2170 aa13.82□□□□□ -0.2
HMGA1-202ENST00000347617 USP34Q70CQ2 3546 aa13.82□□□□□ -0.2
HMGA1-202ENST00000347617 COL27A1Q8IZC6 1860 aaPredicted RBP13.81□□□□□ -0.2
HMGA1-202ENST00000347617 KMT2EQ8IZD2 1858 aa13.81□□□□□ -0.2
HMGA1-202ENST00000347617 IGHV3-20A0A0C4DH32 117 aa13.81□□□□□ -0.2
HMGA1-202ENST00000347617 CDC14CA4D256 554 aa13.81□□□□□ -0.2
HMGA1-202ENST00000347617 OR5H8P0DN80 308 aa13.81□□□□□ -0.2
HMGA1-202ENST00000347617 MMP9P14780 707 aa13.81□□□□□ -0.2
HMGA1-202ENST00000347617 BIDP55957 195 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms