RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 PITX3O75364 302 aa11.91□□□□□ -0.5
COL6A3-202ENST00000347401 HLA-DQA1P01909 254 aa11.91□□□□□ -0.5
COL6A3-202ENST00000347401 MAMSTRQ6ZN01 415 aa11.91□□□□□ -0.5
COL6A3-202ENST00000347401 SLC25A26Q70HW3 274 aa11.91□□□□□ -0.5
COL6A3-202ENST00000347401 MARCH3Q86UD3 253 aa11.91□□□□□ -0.5
COL6A3-202ENST00000347401 TTC9BQ8N6N2 239 aa11.91□□□□□ -0.5
COL6A3-202ENST00000347401 SCCPDHQ8NBX0 429 aa11.91□□□□□ -0.5
COL6A3-202ENST00000347401 GAL3ST2Q9H3Q3 398 aa11.91□□□□□ -0.5
COL6A3-202ENST00000347401 TMEFF2Q9UIK5 374 aaPredicted RBP11.91□□□□□ -0.5
COL6A3-202ENST00000347401 SSX1Q16384 188 aa11.91□□□□□ -0.5
COL6A3-202ENST00000347401 OR10G4Q8NGN3 311 aa11.91□□□□□ -0.5
COL6A3-202ENST00000347401 OR10G9Q8NGN4 311 aa11.91□□□□□ -0.5
COL6A3-202ENST00000347401 OR10G7Q8NGN6 311 aa11.91□□□□□ -0.5
COL6A3-202ENST00000347401 MYOZ3Q8TDC0 251 aa11.91□□□□□ -0.5
COL6A3-202ENST00000347401 FGF13Q92913 245 aa11.91□□□□□ -0.5
COL6A3-202ENST00000347401 WDR34Q96EX3 536 aa11.91□□□□□ -0.5
COL6A3-202ENST00000347401 EFSO43281 561 aa11.91□□□□□ -0.5
COL6A3-202ENST00000347401 KISS1Q15726 138 aa11.91□□□□□ -0.5
COL6A3-202ENST00000347401 TEX30Q5JUR7 227 aa11.91□□□□□ -0.5
COL6A3-202ENST00000347401 TMEM207Q6UWW9 146 aa11.91□□□□□ -0.5
COL6A3-202ENST00000347401 TUSC5Q8IXB3 177 aa11.91□□□□□ -0.5
COL6A3-202ENST00000347401 P2RX4Q99571 388 aa11.91□□□□□ -0.5
COL6A3-202ENST00000347401 LRP12Q9Y561 859 aa11.91□□□□□ -0.5
COL6A3-202ENST00000347401 A0A0B4J2E0 115 aa11.91□□□□□ -0.5
COL6A3-202ENST00000347401 TMEM272A0A1B0GTI8 110 aa11.91□□□□□ -0.5
COL6A3-202ENST00000347401 A0A1B0GX12 115 aa11.91□□□□□ -0.5
COL6A3-202ENST00000347401 CRYAAP02489 173 aa11.91□□□□□ -0.5
COL6A3-202ENST00000347401 ZNF385DQ9H6B1 395 aa11.91□□□□□ -0.5
COL6A3-202ENST00000347401 ZADH2Q8N4Q0 377 aa11.91□□□□□ -0.5
COL6A3-202ENST00000347401 PDCD6O75340 191 aa11.91□□□□□ -0.5
COL6A3-202ENST00000347401 CST7O76096 145 aa11.91□□□□□ -0.5
COL6A3-202ENST00000347401 TMEM40Q8WWA1 233 aa11.91□□□□□ -0.5
COL6A3-202ENST00000347401 SLCO1C1Q9NYB5 712 aa11.91□□□□□ -0.5
COL6A3-202ENST00000347401 SIGLEC7Q9Y286 467 aa11.91□□□□□ -0.5
COL6A3-202ENST00000347401 MFSD2BA6NFX1 497 aa11.91□□□□□ -0.5
COL6A3-202ENST00000347401 LMX1BO60663 402 aa11.91□□□□□ -0.5
COL6A3-202ENST00000347401 SMPD2O60906 423 aa11.91□□□□□ -0.5
COL6A3-202ENST00000347401 PLP1P60201 277 aa11.91□□□□□ -0.5
COL6A3-202ENST00000347401 MIEN1Q9BRT3 115 aa11.91□□□□□ -0.5
COL6A3-202ENST00000347401 ARHGAP32A7KAX9 2087 aa11.91□□□□□ -0.5
COL6A3-202ENST00000347401 CRXO43186 299 aaPredicted RBP11.9□□□□□ -0.5
COL6A3-202ENST00000347401 PRSS23O95084 383 aa11.9□□□□□ -0.5
COL6A3-202ENST00000347401 CDKN2AP42771 156 aaKnown RBP11.9□□□□□ -0.5
COL6A3-202ENST00000347401 RPL30P62888 115 aaKnown RBP11.9□□□□□ -0.5
COL6A3-202ENST00000347401 DOK4Q8TEW6 326 aa11.9□□□□□ -0.5
COL6A3-202ENST00000347401 DUSP13Q9UII6 198 aa11.9□□□□□ -0.5
COL6A3-202ENST00000347401 RHBDL1O75783 438 aa11.9□□□□□ -0.5
COL6A3-202ENST00000347401 SLC25A5P05141 298 aaKnown RBP11.9□□□□□ -0.5
COL6A3-202ENST00000347401 ZNF865P0CJ78 1059 aaPredicted RBP11.9□□□□□ -0.5
COL6A3-202ENST00000347401 DLX1P56177 255 aa11.9□□□□□ -0.5
COL6A3-202ENST00000347401 DSCR4P56555 118 aaPredicted RBP11.9□□□□□ -0.5
COL6A3-202ENST00000347401 CLDN2P57739 230 aa11.9□□□□□ -0.5
COL6A3-202ENST00000347401 RELBQ01201 579 aa11.9□□□□□ -0.5
COL6A3-202ENST00000347401 SLC25A35Q3KQZ1 300 aa11.9□□□□□ -0.5
COL6A3-202ENST00000347401 VHLLQ6RSH7 139 aa11.9□□□□□ -0.5
COL6A3-202ENST00000347401 SPANXA1Q9NS26 97 aa11.9□□□□□ -0.5
COL6A3-202ENST00000347401 LANCL2Q9NS86 450 aa11.9□□□□□ -0.5
COL6A3-202ENST00000347401 CACNA1GO43497 2377 aa11.9□□□□□ -0.5
COL6A3-202ENST00000347401 ADAM20O43506 726 aa11.9□□□□□ -0.5
COL6A3-202ENST00000347401 P01737 135 aa11.9□□□□□ -0.5
COL6A3-202ENST00000347401 CD1AP06126 327 aa11.9□□□□□ -0.5
COL6A3-202ENST00000347401 PWWP2BQ6NUJ5 590 aa11.9□□□□□ -0.5
COL6A3-202ENST00000347401 RHBDD1Q8TEB9 315 aa11.9□□□□□ -0.5
COL6A3-202ENST00000347401 OR2V2Q96R30 315 aa11.9□□□□□ -0.5
COL6A3-202ENST00000347401 A0A0A6YYD5 115 aa11.9□□□□□ -0.5
COL6A3-202ENST00000347401 SPNP16150 400 aa11.9□□□□□ -0.5
COL6A3-202ENST00000347401 PDFQ9HBH1 243 aa11.9□□□□□ -0.5
COL6A3-202ENST00000347401 ZNF253O75346 499 aa11.9□□□□□ -0.5
COL6A3-202ENST00000347401 CEBPBP17676 345 aa11.9□□□□□ -0.5
COL6A3-202ENST00000347401 DEFB119Q8N690 84 aa11.9□□□□□ -0.5
COL6A3-202ENST00000347401 LILRB1Q8NHL6 650 aaPredicted RBP11.9□□□□□ -0.5
COL6A3-202ENST00000347401 FAM131CQ96AQ9 280 aa11.9□□□□□ -0.5
COL6A3-202ENST00000347401 GPX7Q96SL4 187 aaPredicted RBP11.9□□□□□ -0.5
COL6A3-202ENST00000347401 SLC46A2Q9BY10 475 aa11.9□□□□□ -0.5
COL6A3-202ENST00000347401 ZFPL1O95159 310 aa11.9□□□□□ -0.5
COL6A3-202ENST00000347401 ACAA1P09110 424 aaPredicted RBP11.9□□□□□ -0.5
COL6A3-202ENST00000347401 COL19A1Q14993 1142 aa11.9□□□□□ -0.5
COL6A3-202ENST00000347401 JOSD1Q15040 202 aaPredicted RBP11.9□□□□□ -0.5
COL6A3-202ENST00000347401 DEFB133Q30KQ1 61 aa11.9□□□□□ -0.5
COL6A3-202ENST00000347401 OR2B11Q5JQS5 317 aa11.9□□□□□ -0.5
COL6A3-202ENST00000347401 TMEM215Q68D42 235 aa11.9□□□□□ -0.5
COL6A3-202ENST00000347401 ARL6IP6Q8N6S5 226 aa11.9□□□□□ -0.5
COL6A3-202ENST00000347401 ROBO4Q8WZ75 1007 aa11.9□□□□□ -0.5
COL6A3-202ENST00000347401 POM121Q96HA1 1249 aa11.9□□□□□ -0.5
COL6A3-202ENST00000347401 C1QTNF6Q9BXI9 259 aa11.9□□□□□ -0.5
COL6A3-202ENST00000347401 METTL1Q9UBP6 276 aaKnown RBP11.9□□□□□ -0.5
COL6A3-202ENST00000347401 WASHC3Q9Y3C0 194 aa11.9□□□□□ -0.5
COL6A3-202ENST00000347401 MYADML2A6NDP7 307 aa11.9□□□□□ -0.51
COL6A3-202ENST00000347401 M0R3E3 92 aa11.9□□□□□ -0.51
COL6A3-202ENST00000347401 CLEC12BQ2HXU8 276 aa11.9□□□□□ -0.51
COL6A3-202ENST00000347401 NEU3Q9UQ49 428 aa11.9□□□□□ -0.51
COL6A3-202ENST00000347401 CTXND1A0A1B0GTU2 59 aa11.89□□□□□ -0.51
COL6A3-202ENST00000347401 APCSP02743 223 aa11.89□□□□□ -0.51
COL6A3-202ENST00000347401 SARAFQ96BY9 339 aa11.89□□□□□ -0.51
COL6A3-202ENST00000347401 SLC7A10Q9NS82 523 aa11.89□□□□□ -0.51
COL6A3-202ENST00000347401 ADAMTSL3P82987 1691 aa11.89□□□□□ -0.51
COL6A3-202ENST00000347401 GAGE10A6NGK3 116 aa11.89□□□□□ -0.51
COL6A3-202ENST00000347401 DGAT2L7PQ6IED9 249 aa11.89□□□□□ -0.51
COL6A3-202ENST00000347401 OR5AS1Q8N127 324 aa11.89□□□□□ -0.51
COL6A3-202ENST00000347401 TMEM116Q8NCL8 245 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms