RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 DAZAP2Q15038 168 aaPredicted RBP16.71■□□□□ 0.27
COL9A3-201ENST00000343916 SP6Q3SY56 376 aa16.71■□□□□ 0.27
COL9A3-201ENST00000343916 TMEM88Q6PEY1 159 aa16.71■□□□□ 0.27
COL9A3-201ENST00000343916 SLC22A25Q6T423 547 aa16.71■□□□□ 0.27
COL9A3-201ENST00000343916 SGPP2Q8IWX5 399 aa16.71■□□□□ 0.27
COL9A3-201ENST00000343916 SPSB4Q96A44 273 aa16.71■□□□□ 0.27
COL9A3-201ENST00000343916 BCO1Q9HAY6 547 aa16.71■□□□□ 0.27
COL9A3-201ENST00000343916 NECAP2Q9NVZ3 263 aa16.71■□□□□ 0.27
COL9A3-201ENST00000343916 LINC01387J3KSC0 135 aa16.71■□□□□ 0.26
COL9A3-201ENST00000343916 CTSDP07339 412 aaPredicted RBP16.71■□□□□ 0.26
COL9A3-201ENST00000343916 PLA2G2CQ5R387 149 aa16.71■□□□□ 0.26
COL9A3-201ENST00000343916 NSUN5P2Q63ZY6 315 aa16.71■□□□□ 0.26
COL9A3-201ENST00000343916 LINC00518Q8N0U6 118 aa16.71■□□□□ 0.26
COL9A3-201ENST00000343916 TMED6Q8WW62 240 aa16.71■□□□□ 0.26
COL9A3-201ENST00000343916 WNT2BQ93097 391 aa16.71■□□□□ 0.26
COL9A3-201ENST00000343916 ADAT1Q9BUB4 502 aaKnown RBP16.71■□□□□ 0.26
COL9A3-201ENST00000343916 FAM117AQ9C073 453 aa16.71■□□□□ 0.26
COL9A3-201ENST00000343916 C1orf123Q9NWV4 160 aa16.71■□□□□ 0.26
COL9A3-201ENST00000343916 ABI3Q9P2A4 366 aa16.71■□□□□ 0.26
COL9A3-201ENST00000343916 OR7C1O76099 320 aaPredicted RBP16.7■□□□□ 0.26
COL9A3-201ENST00000343916 SYNGR4O95473 234 aa16.7■□□□□ 0.26
COL9A3-201ENST00000343916 TPT1P13693 172 aaKnown RBP16.7■□□□□ 0.26
COL9A3-201ENST00000343916 SPINK2P20155 84 aa16.7■□□□□ 0.26
COL9A3-201ENST00000343916 DTYMKP23919 212 aa16.7■□□□□ 0.26
COL9A3-201ENST00000343916 IAH1Q2TAA2 248 aaPredicted RBP16.7■□□□□ 0.26
COL9A3-201ENST00000343916 ATP1A1-AS1Q5TC04 95 aa16.7■□□□□ 0.26
COL9A3-201ENST00000343916 COLCA1Q6ZS62 124 aa16.7■□□□□ 0.26
COL9A3-201ENST00000343916 BAP18Q8IXM2 172 aa16.7■□□□□ 0.26
COL9A3-201ENST00000343916 STOML3Q8TAV4 291 aa16.7■□□□□ 0.26
COL9A3-201ENST00000343916 OR2S2Q9NQN1 319 aa16.7■□□□□ 0.26
COL9A3-201ENST00000343916 DECR2Q9NUI1 292 aa16.7■□□□□ 0.26
COL9A3-201ENST00000343916 CRYM-AS1A6NIL9 109 aa16.7■□□□□ 0.26
COL9A3-201ENST00000343916 TNFSF15O95150 251 aa16.7■□□□□ 0.26
COL9A3-201ENST00000343916 CD79AP11912 226 aa16.7■□□□□ 0.26
COL9A3-201ENST00000343916 RBM11P57052 281 aaKnown RBP16.7■□□□□ 0.26
COL9A3-201ENST00000343916 ZNF585AQ6P3V2 769 aa16.7■□□□□ 0.26
COL9A3-201ENST00000343916 TSNAXQ99598 290 aaKnown RBP16.7■□□□□ 0.26
COL9A3-201ENST00000343916 PARPBPQ9NWS1 579 aa16.7■□□□□ 0.26
COL9A3-201ENST00000343916 PURGQ9UJV8 347 aaKnown RBP16.7■□□□□ 0.26
COL9A3-201ENST00000343916 PRELID3BQ9Y3B1 194 aa16.7■□□□□ 0.26
COL9A3-201ENST00000343916 LYL1P12980 280 aa16.69■□□□□ 0.26
COL9A3-201ENST00000343916 NRN1LQ496H8 165 aa16.69■□□□□ 0.26
COL9A3-201ENST00000343916 MRPL24Q96A35 216 aaKnown RBP16.69■□□□□ 0.26
COL9A3-201ENST00000343916 LINC00470Q9BZP3 86 aa16.69■□□□□ 0.26
COL9A3-201ENST00000343916 FGF23Q9GZV9 251 aaPredicted RBP16.69■□□□□ 0.26
COL9A3-201ENST00000343916 PRRC2CQ9Y520 2896 aaKnown RBP16.69■□□□□ 0.26
COL9A3-201ENST00000343916 PCNX2A6NKB5 2137 aa16.69■□□□□ 0.26
COL9A3-201ENST00000343916 ABCD4O14678 606 aa16.69■□□□□ 0.26
COL9A3-201ENST00000343916 ATG12O94817 140 aa16.69■□□□□ 0.26
COL9A3-201ENST00000343916 NGFP01138 241 aa16.69■□□□□ 0.26
COL9A3-201ENST00000343916 FCGR2CP31995 323 aa16.69■□□□□ 0.26
COL9A3-201ENST00000343916 AIMP2Q13155 320 aaKnown RBP16.69■□□□□ 0.26
COL9A3-201ENST00000343916 PLEKHN1Q494U1 663 aaPredicted RBP16.69■□□□□ 0.26
COL9A3-201ENST00000343916 HES3Q5TGS1 186 aa16.69■□□□□ 0.26
COL9A3-201ENST00000343916 DHRS11Q6UWP2 260 aa16.69■□□□□ 0.26
COL9A3-201ENST00000343916 HS3ST6Q96QI5 342 aa16.69■□□□□ 0.26
COL9A3-201ENST00000343916 PIGMQ9H3S5 423 aa16.69■□□□□ 0.26
COL9A3-201ENST00000343916 ZNF442Q9H7R0 627 aa16.69■□□□□ 0.26
COL9A3-201ENST00000343916 IL36GQ9NZH8 169 aa16.69■□□□□ 0.26
COL9A3-201ENST00000343916 PDCD6O75340 191 aa16.68■□□□□ 0.26
COL9A3-201ENST00000343916 ZNF728P0DKX0 622 aa16.68■□□□□ 0.26
COL9A3-201ENST00000343916 ECI1P42126 302 aa16.68■□□□□ 0.26
COL9A3-201ENST00000343916 GPM6AP51674 278 aa16.68■□□□□ 0.26
COL9A3-201ENST00000343916 MALLQ13021 153 aa16.68■□□□□ 0.26
COL9A3-201ENST00000343916 GUCA2BQ16661 112 aa16.68■□□□□ 0.26
COL9A3-201ENST00000343916 PHLDA2Q53GA4 152 aa16.68■□□□□ 0.26
COL9A3-201ENST00000343916 C5orf24Q7Z6I8 188 aa16.68■□□□□ 0.26
COL9A3-201ENST00000343916 PUSL1Q8N0Z8 303 aaKnown RBP16.68■□□□□ 0.26
COL9A3-201ENST00000343916 REPIN1Q9BWE0 567 aaKnown RBP16.68■□□□□ 0.26
COL9A3-201ENST00000343916 LIPGQ9Y5X9 500 aa16.68■□□□□ 0.26
COL9A3-201ENST00000343916 OR5AC1P0C628 307 aa16.68■□□□□ 0.26
COL9A3-201ENST00000343916 ADCYAP1P18509 176 aa16.68■□□□□ 0.26
COL9A3-201ENST00000343916 HAAOP46952 286 aa16.68■□□□□ 0.26
COL9A3-201ENST00000343916 MEOX1P50221 254 aa16.68■□□□□ 0.26
COL9A3-201ENST00000343916 FLI1Q01543 452 aaPredicted RBP16.68■□□□□ 0.26
COL9A3-201ENST00000343916 GGNBP1Q5YKI7 109 aa16.68■□□□□ 0.26
COL9A3-201ENST00000343916 NUFIP2Q7Z417 695 aaKnown RBP16.68■□□□□ 0.26
COL9A3-201ENST00000343916 CCDC36Q8IYA8 594 aa16.68■□□□□ 0.26
COL9A3-201ENST00000343916 SLC30A7Q8NEW0 376 aa16.68■□□□□ 0.26
COL9A3-201ENST00000343916 SLAMF9Q96A28 289 aa16.68■□□□□ 0.26
COL9A3-201ENST00000343916 APH1AQ96BI3 265 aa16.68■□□□□ 0.26
COL9A3-201ENST00000343916 AQP10Q96PS8 301 aa16.68■□□□□ 0.26
COL9A3-201ENST00000343916 KMT2EQ8IZD2 1858 aa16.67■□□□□ 0.26
COL9A3-201ENST00000343916 SPEM2Q0P670 501 aa16.67■□□□□ 0.26
COL9A3-201ENST00000343916 PRDX4Q13162 271 aa16.67■□□□□ 0.26
COL9A3-201ENST00000343916 HPSE2Q8WWQ2 592 aa16.67■□□□□ 0.26
COL9A3-201ENST00000343916 RTN4IP1Q8WWV3 396 aaPredicted RBP16.67■□□□□ 0.26
COL9A3-201ENST00000343916 SLC5A7Q9GZV3 580 aa16.67■□□□□ 0.26
COL9A3-201ENST00000343916 RPL36A-HNRNPH2H7BZ11 118 aa16.67■□□□□ 0.26
COL9A3-201ENST00000343916 PET100P0DJ07 73 aa16.67■□□□□ 0.26
COL9A3-201ENST00000343916 BCL3P20749 454 aa16.67■□□□□ 0.26
COL9A3-201ENST00000343916 RAB1AP62820 205 aa16.67■□□□□ 0.26
COL9A3-201ENST00000343916 ABCA11PQ4W5N1 156 aa16.67■□□□□ 0.26
COL9A3-201ENST00000343916 OR2A2Q6IF42 318 aa16.67■□□□□ 0.26
COL9A3-201ENST00000343916 IL22RA1Q8N6P7 574 aa16.67■□□□□ 0.26
COL9A3-201ENST00000343916 OR5T2Q8NGG2 359 aa16.67■□□□□ 0.26
COL9A3-201ENST00000343916 OR11L1Q8NGX0 322 aa16.67■□□□□ 0.26
COL9A3-201ENST00000343916 C12orf49Q9H741 205 aa16.67■□□□□ 0.26
COL9A3-201ENST00000343916 IL36RNQ9UBH0 155 aa16.67■□□□□ 0.26
COL9A3-201ENST00000343916 ZNF175Q9Y473 711 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms