RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 FOXJ3Q9UPW0 622 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 ZNF726A6NNF4 738 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 H0Y980 276 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 CSN3P07498 182 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 CD79AP11912 226 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 AOAHP28039 575 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 HERV-K104P61576 105 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 UBE2V2Q15819 145 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 TMEM25Q86YD3 366 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 SLC35A4Q96G79 324 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 GAB2Q9UQC2 676 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 IFITM5A6NNB3 132 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 CLEC3AO75596 197 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 RCC1P18754 421 aaPredicted RBP3.16□□□□□ -1.9
SYNE1-201ENST00000341594 MPEG1Q2M385 716 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 C10orf111Q8N326 155 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 BPIFB2Q8N4F0 458 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 OR11H4Q8NGC9 324 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 OR11L1Q8NGX0 322 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 EMG1Q92979 244 aaKnown RBP3.16□□□□□ -1.9
SYNE1-201ENST00000341594 WSB1Q9Y6I7 421 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 OR2J2O76002 312 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 ATXN1LP0C7T5 689 aaKnown RBP3.16□□□□□ -1.9
SYNE1-201ENST00000341594 DAOAP59103 153 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 DGAT2L7PQ6IED9 249 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 OPN5Q6U736 354 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 TMSB15BA0A087X1C1 80 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 FAM157BP0CG42 384 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 RPS18P62269 152 aaKnown RBP3.16□□□□□ -1.9
SYNE1-201ENST00000341594 BMFQ96LC9 184 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 CABLES2Q9BTV7 478 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 C19orf24Q9BVV8 132 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 RSPO3Q9BXY4 272 aaPredicted RBP3.16□□□□□ -1.9
SYNE1-201ENST00000341594 ZNF442Q9H7R0 627 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 ASCL3Q9NQ33 180 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 HIF1ANQ9NWT6 349 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 WNT6Q9Y6F9 365 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 CA2P00918 260 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 IGHA2P01877 340 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 PSMB5P28074 263 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 GPR12P47775 334 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 TMEM267Q0VDI3 215 aaPredicted RBP3.16□□□□□ -1.9
SYNE1-201ENST00000341594 DOC2BQ14184 412 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 TSPO2Q5TGU0 170 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 WASHC3Q9Y3C0 194 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 EFSO43281 561 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 FAM110CQ1W6H9 321 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 PFN4Q8NHR9 129 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 TMEM234Q8WY98 164 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 FGF14Q92915 247 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 URM1Q9BTM9 101 aaKnown RBP3.16□□□□□ -1.9
SYNE1-201ENST00000341594 DUSP26Q9BV47 211 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 MRPS16Q9Y3D3 137 aaKnown RBP3.16□□□□□ -1.9
SYNE1-201ENST00000341594 ZNF878C9JN71 531 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 M0R296 226 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 CDAP32320 146 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 TMEM97Q5BJF2 176 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 C11orf87Q6NUJ2 197 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 C1orf127Q8N9H9 656 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 KCNG3Q8TAE7 436 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 RPS4Y2Q8TD47 263 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 SPSB1Q96BD6 273 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 OR10J1P30954 320 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 FBXL22Q6P050 247 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 IGF2-ASQ6U949 168 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 COLCA1Q6ZS62 124 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 TBC1D26Q86UD7 250 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 ZNF101Q8IZC7 436 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 MRPL37Q9BZE1 423 aaKnown RBP3.16□□□□□ -1.9
SYNE1-201ENST00000341594 TINAGQ9UJW2 476 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 THY1P04216 161 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 ZBTB25P24278 435 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 CSF2RBP32927 897 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 HBG1P69891 147 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 HBG2P69892 147 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 SLC22A6Q4U2R8 563 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 POC1AQ8NBT0 407 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 MRPS28Q9Y2Q9 187 aaKnown RBP3.16□□□□□ -1.9
SYNE1-201ENST00000341594 LGALS2P05162 132 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 AMY2BP19961 511 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 ENDOGQ14249 297 aaKnown RBP3.16□□□□□ -1.9
SYNE1-201ENST00000341594 RASL11AQ6T310 242 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 OR2W3Q7Z3T1 314 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 FKBP11Q9NYL4 201 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 EDDM13A0A1B0GTR0 161 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 A0A1W2PPV4 95 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 GLSO94925 669 aaPredicted RBP3.16□□□□□ -1.9
SYNE1-201ENST00000341594 CA1P00915 261 aaPredicted RBP3.16□□□□□ -1.9
SYNE1-201ENST00000341594 APLNRP35414 380 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 GVQW1Q8N7I0 195 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 FLYWCH2Q96CP2 140 aaKnown RBP3.16□□□□□ -1.9
SYNE1-201ENST00000341594 C1QTNF2Q9BXJ5 285 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 KIAA1456Q9P272 454 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 COX11Q9Y6N1 276 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 FKBP1BP68106 108 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 PLPPR5Q32ZL2 321 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 OR52E5Q8NH55 327 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 PGA4P0DJD7 388 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 PGA5P0DJD9 388 aa3.16□□□□□ -1.9
SYNE1-201ENST00000341594 PHOSPHO1Q8TCT1 267 aa3.16□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms