RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 FAM221AA4D161 298 aa11.4□□□□□ -0.58
HMGB1-202ENST00000339872 OR2AT4A6NND4 320 aa11.4□□□□□ -0.58
HMGB1-202ENST00000339872 C3orf80F5H4A9 247 aa11.4□□□□□ -0.58
HMGB1-202ENST00000339872 C16orf97H3BN30 126 aa11.4□□□□□ -0.58
HMGB1-202ENST00000339872 FCGR3AP08637 254 aa11.4□□□□□ -0.58
HMGB1-202ENST00000339872 DUSP1P28562 367 aa11.4□□□□□ -0.58
HMGB1-202ENST00000339872 TSPAN5P62079 268 aa11.4□□□□□ -0.58
HMGB1-202ENST00000339872 ZNF154Q13106 437 aa11.4□□□□□ -0.58
HMGB1-202ENST00000339872 IKZF1Q13422 519 aa11.4□□□□□ -0.58
HMGB1-202ENST00000339872 CHRFAM7AQ494W8 412 aa11.4□□□□□ -0.58
HMGB1-202ENST00000339872 C4orf46Q504U0 113 aa11.4□□□□□ -0.58
HMGB1-202ENST00000339872 C17orf107Q6ZR85 190 aa11.4□□□□□ -0.58
HMGB1-202ENST00000339872 ARRDC1Q8N5I2 433 aa11.4□□□□□ -0.58
HMGB1-202ENST00000339872 POM121Q96HA1 1249 aa11.4□□□□□ -0.58
HMGB1-202ENST00000339872 VKORC1Q9BQB6 163 aa11.4□□□□□ -0.58
HMGB1-202ENST00000339872 EHFQ9NZC4 300 aa11.4□□□□□ -0.58
HMGB1-202ENST00000339872 VSIG4Q9Y279 399 aa11.4□□□□□ -0.58
HMGB1-202ENST00000339872 IGKV1D-8A0A087WSZ0 117 aa11.4□□□□□ -0.59
HMGB1-202ENST00000339872 SNRPGP15A8MWD9 76 aa11.4□□□□□ -0.59
HMGB1-202ENST00000339872 SDCBPO00560 298 aaPredicted RBP11.4□□□□□ -0.59
HMGB1-202ENST00000339872 GRPP07492 148 aa11.4□□□□□ -0.59
HMGB1-202ENST00000339872 SULT1A3P0DMM9 295 aa11.4□□□□□ -0.59
HMGB1-202ENST00000339872 SULT1A4P0DMN0 295 aa11.4□□□□□ -0.59
HMGB1-202ENST00000339872 CASP6P55212 293 aa11.4□□□□□ -0.59
HMGB1-202ENST00000339872 MPV17LQ2QL34 196 aa11.4□□□□□ -0.59
HMGB1-202ENST00000339872 FAM76BQ5HYJ3 339 aa11.4□□□□□ -0.59
HMGB1-202ENST00000339872 FAM58AQ8N1B3 248 aa11.4□□□□□ -0.59
HMGB1-202ENST00000339872 OR5AP2Q8NGF4 316 aa11.4□□□□□ -0.59
HMGB1-202ENST00000339872 CCDC107Q8WV48 283 aa11.4□□□□□ -0.59
HMGB1-202ENST00000339872 DMRTA2Q96SC8 542 aa11.4□□□□□ -0.59
HMGB1-202ENST00000339872 PLK3Q9H4B4 646 aa11.4□□□□□ -0.59
HMGB1-202ENST00000339872 MSL2Q9HCI7 577 aa11.4□□□□□ -0.59
HMGB1-202ENST00000339872 JKAMPQ9P055 326 aa11.4□□□□□ -0.59
HMGB1-202ENST00000339872 POLDIP2Q9Y2S7 368 aa11.4□□□□□ -0.59
HMGB1-202ENST00000339872 SPEF1Q9Y4P9 236 aa11.4□□□□□ -0.59
HMGB1-202ENST00000339872 TMEM210A6NLX4 147 aa11.39□□□□□ -0.59
HMGB1-202ENST00000339872 ATP6V1G2-DDX39BF2Z307 99 aa11.39□□□□□ -0.59
HMGB1-202ENST00000339872 HSPB6O14558 160 aa11.39□□□□□ -0.59
HMGB1-202ENST00000339872 CDIPTO14735 213 aa11.39□□□□□ -0.59
HMGB1-202ENST00000339872 DTYMKP23919 212 aa11.39□□□□□ -0.59
HMGB1-202ENST00000339872 ARPC4P59998 168 aa11.39□□□□□ -0.59
HMGB1-202ENST00000339872 SEZ6L2Q6UXD5 910 aa11.39□□□□□ -0.59
HMGB1-202ENST00000339872 Q6ZR03 302 aa11.39□□□□□ -0.59
HMGB1-202ENST00000339872 C12orf4Q9NQ89 552 aa11.39□□□□□ -0.59
HMGB1-202ENST00000339872 F5H5P2 479 aa11.38□□□□□ -0.59
HMGB1-202ENST00000339872 SMLR1H3BR10 107 aa11.38□□□□□ -0.59
HMGB1-202ENST00000339872 ANXA3P12429 323 aa11.38□□□□□ -0.59
HMGB1-202ENST00000339872 MSMPQ1L6U9 139 aa11.38□□□□□ -0.59
HMGB1-202ENST00000339872 TMEM211Q6ICI0 200 aa11.38□□□□□ -0.59
HMGB1-202ENST00000339872 VHLLQ6RSH7 139 aa11.38□□□□□ -0.59
HMGB1-202ENST00000339872 TMEM17Q86X19 198 aa11.38□□□□□ -0.59
HMGB1-202ENST00000339872 ZDHHC22Q8N966 263 aa11.38□□□□□ -0.59
HMGB1-202ENST00000339872 PPA2Q9H2U2 334 aa11.38□□□□□ -0.59
HMGB1-202ENST00000339872 PRORYQ9H606 182 aa11.38□□□□□ -0.59
HMGB1-202ENST00000339872 DUSP13Q9UII6 198 aa11.38□□□□□ -0.59
HMGB1-202ENST00000339872 ANXA10Q9UJ72 324 aa11.38□□□□□ -0.59
HMGB1-202ENST00000339872 EDARQ9UNE0 448 aa11.38□□□□□ -0.59
HMGB1-202ENST00000339872 MEMO1Q9Y316 297 aa11.38□□□□□ -0.59
HMGB1-202ENST00000339872 ZZEF1O43149 2961 aa11.38□□□□□ -0.59
HMGB1-202ENST00000339872 PRSS44E7EML9 344 aa11.38□□□□□ -0.59
HMGB1-202ENST00000339872 OR4E1P0C645 316 aa11.38□□□□□ -0.59
HMGB1-202ENST00000339872 GMFBP60983 142 aa11.38□□□□□ -0.59
HMGB1-202ENST00000339872 UBE2MP61081 183 aaKnown RBP11.38□□□□□ -0.59
HMGB1-202ENST00000339872 C1QTNF12Q5T7M4 302 aa11.38□□□□□ -0.59
HMGB1-202ENST00000339872 LINC00596Q86U02 117 aa11.38□□□□□ -0.59
HMGB1-202ENST00000339872 NOXA1Q86UR1 476 aa11.38□□□□□ -0.59
HMGB1-202ENST00000339872 LRP11Q86VZ4 500 aa11.38□□□□□ -0.59
HMGB1-202ENST00000339872 MUC20Q8N307 709 aaPredicted RBP11.38□□□□□ -0.59
HMGB1-202ENST00000339872 TERB2Q8NHR7 220 aa11.38□□□□□ -0.59
HMGB1-202ENST00000339872 MARCH1Q8TCQ1 289 aa11.38□□□□□ -0.59
HMGB1-202ENST00000339872 NEK7Q8TDX7 302 aa11.38□□□□□ -0.59
HMGB1-202ENST00000339872 ALX4Q9H161 411 aaPredicted RBP11.38□□□□□ -0.59
HMGB1-202ENST00000339872 CXXC4Q9H2H0 198 aa11.38□□□□□ -0.59
HMGB1-202ENST00000339872 RCC2Q9P258 522 aaKnown RBP11.38□□□□□ -0.59
HMGB1-202ENST00000339872 MGAT4CQ9UBM8 478 aa11.38□□□□□ -0.59
HMGB1-202ENST00000339872 GLRXP35754 106 aa11.37□□□□□ -0.59
HMGB1-202ENST00000339872 PMELP40967 661 aa11.37□□□□□ -0.59
HMGB1-202ENST00000339872 NKX6-1P78426 367 aaPredicted RBP11.37□□□□□ -0.59
HMGB1-202ENST00000339872 LY6DQ14210 128 aa11.37□□□□□ -0.59
HMGB1-202ENST00000339872 IL13RA2Q14627 380 aa11.37□□□□□ -0.59
HMGB1-202ENST00000339872 CDK10Q15131 360 aa11.37□□□□□ -0.59
HMGB1-202ENST00000339872 OVCH2Q7RTZ1 564 aa11.37□□□□□ -0.59
HMGB1-202ENST00000339872 WFDC8Q8IUA0 241 aa11.37□□□□□ -0.59
HMGB1-202ENST00000339872 Q8IYB0 196 aa11.37□□□□□ -0.59
HMGB1-202ENST00000339872 ST6GALNAC3Q8NDV1 305 aa11.37□□□□□ -0.59
HMGB1-202ENST00000339872 OR13G1Q8NGZ3 307 aa11.37□□□□□ -0.59
HMGB1-202ENST00000339872 USB1Q9BQ65 265 aaKnown RBP11.37□□□□□ -0.59
HMGB1-202ENST00000339872 FN3KRPQ9HA64 309 aa11.37□□□□□ -0.59
HMGB1-202ENST00000339872 CHMP1AQ9HD42 196 aaPredicted RBP11.37□□□□□ -0.59
HMGB1-202ENST00000339872 SHANK1Q9Y566 2161 aa11.37□□□□□ -0.59
HMGB1-202ENST00000339872 CHD8Q9HCK8 2581 aa11.37□□□□□ -0.59
HMGB1-202ENST00000339872 MEIKINA0A087WXM9 373 aa11.37□□□□□ -0.59
HMGB1-202ENST00000339872 PGA5P0DJD9 388 aa11.37□□□□□ -0.59
HMGB1-202ENST00000339872 CD40P25942 277 aa11.37□□□□□ -0.59
HMGB1-202ENST00000339872 CA7P43166 264 aa11.37□□□□□ -0.59
HMGB1-202ENST00000339872 NPY4RP50391 375 aa11.37□□□□□ -0.59
HMGB1-202ENST00000339872 KCNJ8Q15842 424 aa11.37□□□□□ -0.59
HMGB1-202ENST00000339872 SLC22A25Q6T423 547 aa11.37□□□□□ -0.59
HMGB1-202ENST00000339872 UXS1Q8NBZ7 420 aa11.37□□□□□ -0.59
HMGB1-202ENST00000339872 RHOFQ9HBH0 211 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms