RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 LRRC3CA6NJW4 275 aa8.82□□□□□ -1
USP54-201ENST00000339859 B8ZZF3 427 aa8.82□□□□□ -1
USP54-201ENST00000339859 DAOP14920 347 aa8.82□□□□□ -1
USP54-201ENST00000339859 OR3A1P47881 315 aa8.82□□□□□ -1
USP54-201ENST00000339859 C4orf17Q53FE4 359 aa8.82□□□□□ -1
USP54-201ENST00000339859 PCGF1Q9BSM1 259 aa8.82□□□□□ -1
USP54-201ENST00000339859 TCRBP04435 133 aa8.82□□□□□ -1
USP54-201ENST00000339859 TPT1P13693 172 aaKnown RBP8.82□□□□□ -1
USP54-201ENST00000339859 GLRXP35754 106 aa8.82□□□□□ -1
USP54-201ENST00000339859 PRSS12P56730 875 aa8.82□□□□□ -1
USP54-201ENST00000339859 EGR4Q05215 589 aa8.82□□□□□ -1
USP54-201ENST00000339859 TATDN3Q17R31 274 aa8.82□□□□□ -1
USP54-201ENST00000339859 ZBTB8BQ8NAP8 495 aaPredicted RBP8.82□□□□□ -1
USP54-201ENST00000339859 PERPQ96FX8 193 aa8.82□□□□□ -1
USP54-201ENST00000339859 GPA33Q99795 319 aa8.82□□□□□ -1
USP54-201ENST00000339859 EIF5A2Q9GZV4 153 aaKnown RBP8.82□□□□□ -1
USP54-201ENST00000339859 SMAD7O15105 426 aaKnown RBP8.82□□□□□ -1
USP54-201ENST00000339859 GCM2O75603 506 aaPredicted RBP8.82□□□□□ -1
USP54-201ENST00000339859 GLI4P10075 376 aa8.82□□□□□ -1
USP54-201ENST00000339859 ZNF816Q0VGE8 651 aaPredicted RBP8.82□□□□□ -1
USP54-201ENST00000339859 BCL2L2Q92843 193 aaPredicted RBP8.82□□□□□ -1
USP54-201ENST00000339859 RHOFQ9HBH0 211 aa8.82□□□□□ -1
USP54-201ENST00000339859 RNF24Q9Y225 148 aa8.82□□□□□ -1
USP54-201ENST00000339859 TRDCB7Z8K6 153 aa8.82□□□□□ -1
USP54-201ENST00000339859 PLA2G7Q13093 441 aa8.82□□□□□ -1
USP54-201ENST00000339859 IAH1Q2TAA2 248 aaPredicted RBP8.82□□□□□ -1
USP54-201ENST00000339859 DBX2Q6ZNG2 339 aa8.82□□□□□ -1
USP54-201ENST00000339859 ZNF714Q96N38 554 aa8.82□□□□□ -1
USP54-201ENST00000339859 NXPH3O95157 252 aa8.81□□□□□ -1
USP54-201ENST00000339859 GK2Q14410 553 aaPredicted RBP8.81□□□□□ -1
USP54-201ENST00000339859 ZNF770Q6IQ21 691 aaPredicted RBP8.81□□□□□ -1
USP54-201ENST00000339859 OR2T35Q8NGX2 323 aa8.81□□□□□ -1
USP54-201ENST00000339859 NANPQ8TBE9 248 aa8.81□□□□□ -1
USP54-201ENST00000339859 ZNF596Q8TC21 504 aa8.81□□□□□ -1
USP54-201ENST00000339859 SSC4DQ8WTU2 575 aa8.81□□□□□ -1
USP54-201ENST00000339859 ADRA2CP18825 462 aa8.81□□□□□ -1
USP54-201ENST00000339859 IL13RA2Q14627 380 aa8.81□□□□□ -1
USP54-201ENST00000339859 MRPS18AQ9NVS2 196 aaKnown RBP8.81□□□□□ -1
USP54-201ENST00000339859 M0R036 132 aa8.81□□□□□ -1
USP54-201ENST00000339859 CD1AP06126 327 aa8.81□□□□□ -1
USP54-201ENST00000339859 RRASP10301 218 aa8.81□□□□□ -1
USP54-201ENST00000339859 NKX2-1P43699 371 aaPredicted RBP8.81□□□□□ -1
USP54-201ENST00000339859 RAP2BP61225 183 aa8.81□□□□□ -1
USP54-201ENST00000339859 LINC00299Q6ZSB3 139 aa8.81□□□□□ -1
USP54-201ENST00000339859 GLCCI1Q86VQ1 547 aa8.81□□□□□ -1
USP54-201ENST00000339859 FAM168AQ92567 244 aa8.81□□□□□ -1
USP54-201ENST00000339859 CHODLQ9H9P2 273 aa8.81□□□□□ -1
USP54-201ENST00000339859 CBLN4Q9NTU7 201 aa8.81□□□□□ -1
USP54-201ENST00000339859 IGHV3-43A0A0B4J1X8 118 aa8.81□□□□□ -1
USP54-201ENST00000339859 RFPL4AA6NLU0 287 aa8.81□□□□□ -1
USP54-201ENST00000339859 RFPL4AL1F8VTS6 287 aa8.81□□□□□ -1
USP54-201ENST00000339859 J3QKU1 62 aa8.81□□□□□ -1
USP54-201ENST00000339859 IGHV3-43DP0DP04 118 aa8.81□□□□□ -1
USP54-201ENST00000339859 ANXA7P20073 488 aaKnown RBP8.81□□□□□ -1
USP54-201ENST00000339859 PIGPP57054 158 aa8.81□□□□□ -1
USP54-201ENST00000339859 DGCR2P98153 550 aa8.81□□□□□ -1
USP54-201ENST00000339859 C6orf201Q7Z4U5 140 aa8.81□□□□□ -1
USP54-201ENST00000339859 OR2D2Q9H210 308 aa8.81□□□□□ -1
USP54-201ENST00000339859 A0A1W2PRD5 423 aa8.81□□□□□ -1
USP54-201ENST00000339859 A0A1W2PRF3 423 aa8.81□□□□□ -1
USP54-201ENST00000339859 A0A1W2PRM7 423 aa8.81□□□□□ -1
USP54-201ENST00000339859 DFFBO76075 338 aa8.81□□□□□ -1
USP54-201ENST00000339859 CA7P43166 264 aa8.81□□□□□ -1
USP54-201ENST00000339859 RHOUQ7L0Q8 258 aa8.81□□□□□ -1
USP54-201ENST00000339859 ARRDC1Q8N5I2 433 aa8.81□□□□□ -1
USP54-201ENST00000339859 SUMF2Q8NBJ7 301 aa8.81□□□□□ -1
USP54-201ENST00000339859 SMIM3Q9BZL3 60 aa8.81□□□□□ -1
USP54-201ENST00000339859 PKIBQ9C010 78 aa8.81□□□□□ -1
USP54-201ENST00000339859 GCM1Q9NP62 436 aa8.81□□□□□ -1
USP54-201ENST00000339859 LHFPL6Q9Y693 200 aa8.81□□□□□ -1
USP54-201ENST00000339859 ARPC5O15511 151 aa8.8□□□□□ -1
USP54-201ENST00000339859 TTRP02766 147 aa8.8□□□□□ -1
USP54-201ENST00000339859 FAM27D1Q5T7N8 215 aa8.8□□□□□ -1
USP54-201ENST00000339859 RFESDQ8TAC1 157 aa8.8□□□□□ -1
USP54-201ENST00000339859 OR4C45A6NMZ5 311 aa8.8□□□□□ -1
USP54-201ENST00000339859 MRPS11P82912 194 aaKnown RBP8.8□□□□□ -1
USP54-201ENST00000339859 Q3ZCU0 254 aa8.8□□□□□ -1
USP54-201ENST00000339859 TMEM268Q5VZI3 342 aa8.8□□□□□ -1
USP54-201ENST00000339859 GCSAMQ8N6F7 178 aa8.8□□□□□ -1
USP54-201ENST00000339859 UBAC2Q8NBM4 344 aa8.8□□□□□ -1
USP54-201ENST00000339859 MFFQ9GZY8 342 aa8.8□□□□□ -1
USP54-201ENST00000339859 PLXNA2O75051 1894 aa8.8□□□□□ -1
USP54-201ENST00000339859 C2orf16Q68DN1 1984 aa8.8□□□□□ -1
USP54-201ENST00000339859 PTPRZ1P23471 2315 aaPredicted RBP8.8□□□□□ -1
USP54-201ENST00000339859 DHRS7CA6NNS2 312 aa8.8□□□□□ -1
USP54-201ENST00000339859 LY86O95711 162 aa8.8□□□□□ -1
USP54-201ENST00000339859 DSCR9P59020 149 aa8.8□□□□□ -1
USP54-201ENST00000339859 RPL31P62899 125 aaKnown RBP8.8□□□□□ -1
USP54-201ENST00000339859 IGFL3Q6UXB1 125 aa8.8□□□□□ -1
USP54-201ENST00000339859 CCL13Q99616 98 aa8.8□□□□□ -1
USP54-201ENST00000339859 AUNIPQ9H7T9 357 aa8.8□□□□□ -1
USP54-201ENST00000339859 KLHDC2Q9Y2U9 406 aa8.8□□□□□ -1
USP54-201ENST00000339859 EVX1P49640 407 aa8.8□□□□□ -1
USP54-201ENST00000339859 CCR6P51684 374 aa8.8□□□□□ -1
USP54-201ENST00000339859 Q6ZRG5 221 aa8.8□□□□□ -1
USP54-201ENST00000339859 NAA40Q86UY6 237 aa8.8□□□□□ -1
USP54-201ENST00000339859 LOC105371242A0A075B767 164 aa8.79□□□□□ -1
USP54-201ENST00000339859 FGF2P09038 288 aa8.79□□□□□ -1
USP54-201ENST00000339859 PMELP40967 661 aa8.79□□□□□ -1
USP54-201ENST00000339859 TMEM267Q0VDI3 215 aaPredicted RBP8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 83.6 ms