RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 SIAH2O43255 324 aa3.51□□□□□ -1.85
MCF2-201ENST00000338585 SPRY3O43610 288 aa3.51□□□□□ -1.85
MCF2-201ENST00000338585 ZG16O60844 167 aa3.51□□□□□ -1.85
MCF2-201ENST00000338585 PDCD6O75340 191 aa3.51□□□□□ -1.85
MCF2-201ENST00000338585 RAB3DO95716 219 aa3.51□□□□□ -1.85
MCF2-201ENST00000338585 CYB5AP00167 134 aa3.51□□□□□ -1.85
MCF2-201ENST00000338585 IGHV3-13P01766 116 aa3.51□□□□□ -1.85
MCF2-201ENST00000338585 PMP2P02689 132 aa3.51□□□□□ -1.85
MCF2-201ENST00000338585 CD74P04233 296 aa3.51□□□□□ -1.85
MCF2-201ENST00000338585 PRB1P04280 392 aa3.51□□□□□ -1.85
MCF2-201ENST00000338585 AMY2AP04746 511 aa3.51□□□□□ -1.85
MCF2-201ENST00000338585 ZNF735P0CB33 412 aa3.51□□□□□ -1.85
MCF2-201ENST00000338585 AKAIN1P0CW23 69 aa3.51□□□□□ -1.85
MCF2-201ENST00000338585 PTAFRP25105 342 aa3.51□□□□□ -1.85
MCF2-201ENST00000338585 RCVRNP35243 200 aa3.51□□□□□ -1.85
MCF2-201ENST00000338585 HRH1P35367 487 aa3.51□□□□□ -1.85
MCF2-201ENST00000338585 RANBP1P43487 201 aa3.51□□□□□ -1.85
MCF2-201ENST00000338585 ERVK11-1P61568 191 aa3.51□□□□□ -1.85
MCF2-201ENST00000338585 TLE1Q04724 770 aa3.51□□□□□ -1.85
MCF2-201ENST00000338585 SSBP1Q04837 148 aaKnown RBP3.51□□□□□ -1.85
MCF2-201ENST00000338585 IKZF1Q13422 519 aa3.51□□□□□ -1.85
MCF2-201ENST00000338585 FAM189A2Q15884 450 aa3.51□□□□□ -1.85
MCF2-201ENST00000338585 PNLIPRP3Q17RR3 467 aa3.51□□□□□ -1.85
MCF2-201ENST00000338585 MICBQ29980 383 aa3.51□□□□□ -1.85
MCF2-201ENST00000338585 TUSC1Q2TAM9 212 aa3.51□□□□□ -1.85
MCF2-201ENST00000338585 FBXL19-AS1Q494R0 122 aa3.51□□□□□ -1.85
MCF2-201ENST00000338585 ZNF782Q6ZMW2 699 aaPredicted RBP3.51□□□□□ -1.85
MCF2-201ENST00000338585 C5orf24Q7Z6I8 188 aa3.51□□□□□ -1.85
MCF2-201ENST00000338585 DMRTC2Q8IXT2 367 aaPredicted RBP3.51□□□□□ -1.85
MCF2-201ENST00000338585 FAM58AQ8N1B3 248 aa3.51□□□□□ -1.85
MCF2-201ENST00000338585 TMEM229BQ8NBD8 167 aa3.51□□□□□ -1.85
MCF2-201ENST00000338585 BEST4Q8NFU0 473 aa3.51□□□□□ -1.85
MCF2-201ENST00000338585 OR13G1Q8NGZ3 307 aa3.51□□□□□ -1.85
MCF2-201ENST00000338585 CA5BP1Q8WTZ4 195 aa3.51□□□□□ -1.85
MCF2-201ENST00000338585 RNASE6Q93091 150 aaKnown RBP3.51□□□□□ -1.85
MCF2-201ENST00000338585 CREB3L1Q96BA8 519 aa3.51□□□□□ -1.85
MCF2-201ENST00000338585 MRPS24Q96EL2 167 aaKnown RBP3.51□□□□□ -1.85
MCF2-201ENST00000338585 SLC6A7Q99884 636 aa3.51□□□□□ -1.85
MCF2-201ENST00000338585 USB1Q9BQ65 265 aaKnown RBP3.51□□□□□ -1.85
MCF2-201ENST00000338585 NRIP2Q9BQI9 281 aa3.51□□□□□ -1.85
MCF2-201ENST00000338585 PKIBQ9C010 78 aa3.51□□□□□ -1.85
MCF2-201ENST00000338585 C20orf85Q9H1P6 137 aa3.51□□□□□ -1.85
MCF2-201ENST00000338585 WDR13Q9H1Z4 485 aa3.51□□□□□ -1.85
MCF2-201ENST00000338585 CXXC4Q9H2H0 198 aa3.51□□□□□ -1.85
MCF2-201ENST00000338585 ZNF701Q9NV72 531 aaPredicted RBP3.51□□□□□ -1.85
MCF2-201ENST00000338585 TAAR3PQ9P1P4 343 aa3.51□□□□□ -1.85
MCF2-201ENST00000338585 ERRFI1Q9UJM3 462 aaPredicted RBP3.51□□□□□ -1.85
MCF2-201ENST00000338585 ANAPC10Q9UM13 185 aa3.51□□□□□ -1.85
MCF2-201ENST00000338585 ALG5Q9Y673 324 aa3.51□□□□□ -1.85
MCF2-201ENST00000338585 ATP23Q9Y6H3 246 aa3.51□□□□□ -1.85
MCF2-201ENST00000338585 CHD3Q12873 2000 aaKnown RBP3.51□□□□□ -1.85
MCF2-201ENST00000338585 PKDREJQ9NTG1 2253 aa3.51□□□□□ -1.85
MCF2-201ENST00000338585 CACNA1DQ01668 2161 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP3.5□□□□□ -1.85
MCF2-201ENST00000338585 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP3.5□□□□□ -1.85
MCF2-201ENST00000338585 A0A1B0GWJ7 208 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 NAP1L6A6NFF2 107 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 SERPINE3A8MV23 424 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 A8MV72 311 aaPredicted RBP3.5□□□□□ -1.85
MCF2-201ENST00000338585 SHISA9B4DS77 424 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 BOLA2-SMG1P6H3BVE0 249 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 ARPC1BO15143 372 aaKnown RBP3.5□□□□□ -1.85
MCF2-201ENST00000338585 PLAUP00749 431 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 H2AFB2P0C5Z0 115 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 PGA5P0DJD9 388 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 FUT3P21217 361 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 CEBPDP49716 269 aaPredicted RBP3.5□□□□□ -1.85
MCF2-201ENST00000338585 ADIPOQQ15848 244 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 RNASE10Q5GAN6 216 aaKnown RBP3.5□□□□□ -1.85
MCF2-201ENST00000338585 AGAP6Q5VW22 663 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 WDR82Q6UXN9 313 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 BTN2A1Q7KYR7 527 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 C1orf174Q8IYL3 243 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 BPIFB2Q8N4F0 458 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 NUP37Q8NFH4 326 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 RDH5Q92781 318 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 MRPL24Q96A35 216 aaKnown RBP3.5□□□□□ -1.85
MCF2-201ENST00000338585 ELMOD3Q96FG2 381 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 PLPPR2Q96GM1 343 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 BBC3Q96PG8 261 aaPredicted RBP3.5□□□□□ -1.85
MCF2-201ENST00000338585 OCSTAMPQ9BR26 566 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 ZNF442Q9H7R0 627 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 PCDHB16Q9NRJ7 776 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 RALYQ9UKM9 306 aaKnown RBP3.5□□□□□ -1.85
MCF2-201ENST00000338585 HSF4Q9ULV5 492 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 NOP16Q9Y3C1 178 aaKnown RBP3.5□□□□□ -1.85
MCF2-201ENST00000338585 NUBP2Q9Y5Y2 271 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 SPTBN1Q01082 2364 aaKnown RBP3.5□□□□□ -1.85
MCF2-201ENST00000338585 A0A0A6YYJ9 748 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 hCG_1807616A0A1W2PRN6 198 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 PLSCR5A0PG75 271 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 TMEM210A6NLX4 147 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 E7EQL1 145 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 PYCARD-AS1I3L0S3 204 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 SDCBPO00560 298 aaPredicted RBP3.5□□□□□ -1.85
MCF2-201ENST00000338585 HS3ST1O14792 307 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 NDUFB6O95139 128 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 NXPH2O95156 264 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 ZNF205O95201 554 aa3.5□□□□□ -1.85
MCF2-201ENST00000338585 IGHV1-46P01743 117 aa3.5□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms